SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2702

Length: 3178 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene2702
ATGGGGAAAAGTGCGATCGCACAAGGGAAGTGTTGCAGGGCTCGGGCAGCGGAGAGAGGTTTCCGGCAAAAATAATTTGATGCGACTCCGTTTGATTCATTCAGGAGGCTCCGATTCCGCAGAAGCCTGTGGCAACAAGAGACAAATTCAAACTCTCACAGCTTCGTGACCTTGGCCGTCGTGACCTTGGCTGTCACAATCTGTCGTTGAATGGCTGGCGATGGTTTGGGTCCTACAGACGTGTAGACATTCAAGAATAGAATGCGATATGCATGCATGCTTGGGAAAGTGGACGGGATCGATGCTGTTAAAAGCTCGGGACCTTTAAATGCACCGCAGCTTTTAGAGAGCTTTTAGAGAGAAGCTTGAACGGAAAATTGCGGCCTTCTGCACTGTAATCTTTTCGCATTCTTTGAAATATCGATTCTTTGGCCTGGAGTGCAATATTTTTGATTACTTAAGCGATTGGATCGAAAGACATACATATTTTGGTCCAGTCTATCTCATAACAGATTCATAAATTTGCAAACCTGGACTAGCATCAACTGTGGAGGAAATTCAAATTGAAGAGGGCTTTAAAAACAGCGGCGGCTGTGAAAATAGTTTCAAATCTGTTATAGTTAAAAGGACAAAATGGTTGAATTTGGGAAGAAATTGAAGGAACGACAATATCCAGAATGGCAGCGATATTACATCAATTATAAATTAATGAAGAAGAAGGTGAGGCAATATGCGCAACAAGCTCAAGAAGGAACACAAGACCGTCGTCACGTGCTTAAAGAATTTTCAAAGATGCTAGATCACCAGGTTGAAAAAACTGTGCTATTCTTCCTAGAACAGCAAGGACATCTTGCTAGCAGACTAAGAGCTCTTGGAGAAAAGTGTGAAGCACTGACGCAGCTGAATGATGTTGCTGAAGTGCATGCACTGAGAGAAGCATACAGGGCTTTGGGACAAGACCTTCTGAAGCTGCTAAACTTTGTGGAGATGAATGCAATTGGAGTGCGTAAAATATTGAAAAAGTTTGATAAGCGTTTTGGTTACAGTTTCACAGACTACTATGTAACAAGCCGGTCAAATCACCCTTATTCACAGCTTCAGCAGGTCTTCAAGCATGTGGGGATAGGAGCTGTTGTTGGTGCGTTGTCTCGCAATCTTACAGCATTTCAAAATCGTGGGGGTAGCTACTTATCTATTTATGATCAGCCTATTTCAGCACTGGCACTTCAGGATCCAGTGATTGATGAAATAAAAGATGCAGTAGAGCGTCTTACAAACTCAACAAATTTTCTACGATTTCTTGGGGACATGCACTTATTATTGAAGAGGAATTACCAAGGCCTTCCGAAGAGACATTCACGATCACCCAATCATTTTGTTTCTCTTGTATTGAACTTAGTGAATACTTTCCTTTATATGGTCAACACGTACATAATTGTCCCAACAGCGGACAAATATTCAATGAGCCTAGGAGCTGCAGCAACACTCTGTGGAGTAATAATTGGGTCAATGGCTGTTGCACAACTGGTTTCTTCAGTTTATTTCAGTGCATGGTCAAACAAGTCATATTTCAGGCCACTTGTTTTTAGCAGCATTGTTCTCTTCCTTGGTAATATAATGTATGCAATGGCTTATGATCTGGATTCATTATCTATCCTGCTGATTGGTCGTATTCTTTGTGGTTTAGGTTCTGCAAGAGCTGTCAATAGACGCTACATCAGTGACTGTGTACCATTGAAAACACGCTTAAAGGCCTCTGCTGCATTTGTAAGTGCCAGTGCACTAGGAATGGCTGCTGGACCTGCTTTTGCTGGAATCCTCCAGATTAATAAGTCATTTTTTGGAATTACTCTTAATGAAAATACACTGCCTGGCTGGGTAATGGCAGCAGCATGGTTTGTATATCTTTTGTGGCTTTGGATATCATTTAAAGAACCTTCCCACGAGGATGAAGAAGATCACACTGGCGAGGGTAGCAGTGGAGGAAAAGCAGAGGAAGATGCTGTTAAGGATGGGTTGACCCAACCTCTTCTTTTAAGCTCACGGACTTCAGAAAAATTTATAGATGAGGAGGCTGATCTAGAAATTGATGACAGTGTAGAGTCTTCAGAAGACAGTCGAAAACCTGCAAGCTCAATTGTTGAGGCATATAAATTAGTCACGCCACCTGTAAAGGTGCAACTTTTGATATATTTTATGCTCAAGTATGCAATGGAGATATTGCTTTCTGAGTCAAGTGTTGTCACAGCATACTACTTCAATTGGACTACCAGCTCAGTTGCAATATTCCTTGCATTGCTTGGATTAACACTTTTACCAGTCAATGTTGTTGTTGGCAACTATATCAGCAACATGTTTGAGGACAGGCAAATTTTATTTGCTGCTGAAGTGTTTACATGCGTTGGTATCCTGCTAAGCTTCAATATGATATTCCCCTACTCAGTTACACAGTATGTGAGTGGAGCATTTATCACATTTGTATCTGCCGAAGTTCTTGAAGGTGTGAACCTTTCCTTATTATCAAAGGTCATGTCCTCAAGGTTAGCACGAGGGACCTACAACGGTGGTTTGCTGTCCACAGAAGCTGGAACATTGGCTCGAGTGCTGGCAGATGGTACAATAACATTAGCAGGTTACCTGGGGCAGGGTTTACTTTTGAATGTAACACTGCTGCCTACATTGATCATTGGAGTTATTTCACTCATCGCAACTGGCTACACTTACAATTCTCTCTACTAGTAATTTATACTCTCATTCTTTCTGAAATCAAGTTGGCCGATGCTCTGGAGGTTTGTACAATAAAAATTGTTGGCGTGTTTTCAGTTATGTAACTATAGATGACATGCCAGAATATTTCAAATTTGCTGGCAGGAGAGAGAGCTATAGCCGTTTTGCAGGCTTTTCCTTTTTTTTGTGGAGAAAACTGACGTTTCCACATAAATGTGGATTTCTCTTTGTGGATTATAAGCAAAGTAATGACGCTCCATTTCTCATATGCTTATTAAATCTTACATGCCTGCGTTTATTTCCAGGAATCATTCAAAATGGACGGAACAACAGCCAGAATTTAATAAGTTGGTCAATTGTATGAATTTTTCTCTACTCGCGATCATCAAGTAGTCGAGAGCTTGGATCTAGTGTCATCATTCTTAATACACAGCCTTTATTTGGGGTAACA

Ace file of the UniGene sp_v2.0_unigene2702 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SPX domain-containing membrane protein [Arabidopsis thaliana] sp\|Q9T050.1\|SPXM2_ARATH RecName: Full=SPX domain-containing membrane protein At4g11810 emb\|CAB44319.1\| putative protein [Arabidopsis thaliana] emb\|CAB78224.1\| putative protein [Arabidopsis thal	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	spx domain-containing membrane protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Major facilitator superfamily	IPR011701	-	0.0	-
Sma3	SPX, N-terminal	IPR004331	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLM8

Fln msg:

Fln protein: MVEFGKKLKERQYPEWQRYYINYKLMKKKVRQYAQQAQEGTQDRRHVLKEFSKMLDHQVEKTVLFFLEQQGHLASRLRALGEKCEALTQLNDVAEVHALREAYRALGQDLLKLLNFVEMNAIGVRKILKKFDKRFGYSFTDYYVTSRSNHPYSQLQQVFKHVGIGAVVGALSRNLTAFQNRGGSYLSIYDQPISALALQDPVIDEIKDAVERLTNSTNFLRFLGDMHLLLKRNYQGLPKRHSRSPNHFVSLVLNLVNTFLYMVNTYIIVPTADKYSMSLGAAATLCGVIIGSMAVAQLVSSVYFSAWSNKSYFRPLVFSSIVLFLGNIMYAMAYDLDSLSILLIGRILCGLGSARAVNRRYISDCVPLKTRLKASAAFVSASALGMAAGPAFAGILQINKSFFGITLNENTLPGWVMAAAWFVYLLWLWISFKEPSHEDEEDHTGEGSSGGKAEEDAVKDGLTQPLLLSSRTSEKFIDEEADLEIDDSVESSEDSRKPASSIVEAYKLVTPPVKVQLLIYFMLKYAMEILLSESSVVTAYYFNWTTSSVAIFLALLGLTLLPVNVVVGNYISNMFEDRQILFAAEVFTCVGILLSFNMIFPYSVTQYVSGAFITFVSAEVLEGVNLSLLSKVMSSRLARGTYNGGLLSTEAGTLARVLADGTITLAGYLGQGLLLNVTLLPTLIIGVISLIATGYTYNSLY*

Protein Length: 703

Fln nts: ATGGGGAAAAGTGCGATCGCACAAGGGAAGTGTTGCAGGGCTCGGGCAGCGGAGAGAGGTTTCCGGCAAAAATAATTTGATGCGACTCCGTTTGATTCATTCAGGAGGCTCCGATTCCGCAGAAGCCTGTGGCAACAAGAGACAAATTCAAACTCTCACAGCTTCGTGACCTTGGCCGTCGTGACCTTGGCTGTCACAATCTGTCGTTGAATGGCTGGCGATGGTTTGGGTCCTACAGACGTGTAGACATTCAAGAATAGAATGCGATATGCATGCATGCTTGGGAAAGTGGACGGGATCGATGCTGTTAAAAGCTCGGGACCTTTAAATGCACCGCAGCTTTTAGAGAGCTTTTAGAGAGAAGCTTGAACGGAAAATTGCGGCCTTCTGCACTGTAATCTTTTCGCATTCTTTGAAATATCGATTCTTTGGCCTGGAGTGCAATATTTTTGATTACTTAAGCGATTGGATCGAAAGACATACATATTTTGGTCCAGTCTATCTCATAACAGATTCATAAATTTGCAAACCTGGACTAGCATCAACTGTGGAGGAAATTCAAATTGAAGAGGGCTTTAAAAACAGCGGCGGCTGTGAAAATAGTTTCAAATCTGTTATAGTTAAAAGGACAAA_-_ATGGTTGAATTTGGGAAGAAATTGAAGGAACGACAATATCCAGAATGGCAGCGATATTACATCAATTATAAATTAATGAAGAAGAAGGTGAGGCAATATGCGCAACAAGCTCAAGAAGGAACACAAGACCGTCGTCACGTGCTTAAAGAATTTTCAAAGATGCTAGATCACCAGGTTGAAAAAACTGTGCTATTCTTCCTAGAACAGCAAGGACATCTTGCTAGCAGACTAAGAGCTCTTGGAGAAAAGTGTGAAGCACTGACGCAGCTGAATGATGTTGCTGAAGTGCATGCACTGAGAGAAGCATACAGGGCTTTGGGACAAGACCTTCTGAAGCTGCTAAACTTTGTGGAGATGAATGCAATTGGAGTGCGTAAAATATTGAAAAAGTTTGATAAGCGTTTTGGTTACAGTTTCACAGACTACTATGTAACAAGCCGGTCAAATCACCCTTATTCACAGCTTCAGCAGGTCTTCAAGCATGTGGGGATAGGAGCTGTTGTTGGTGCGTTGTCTCGCAATCTTACAGCATTTCAAAATCGTGGGGGTAGCTACTTATCTATTTATGATCAGCCTATTTCAGCACTGGCACTTCAGGATCCAGTGATTGATGAAATAAAAGATGCAGTAGAGCGTCTTACAAACTCAACAAATTTTCTACGATTTCTTGGGGACATGCACTTATTATTGAAGAGGAATTACCAAGGCCTTCCGAAGAGACATTCACGATCACCCAATCATTTTGTTTCTCTTGTATTGAACTTAGTGAATACTTTCCTTTATATGGTCAACACGTACATAATTGTCCCAACAGCGGACAAATATTCAATGAGCCTAGGAGCTGCAGCAACACTCTGTGGAGTAATAATTGGGTCAATGGCTGTTGCACAACTGGTTTCTTCAGTTTATTTCAGTGCATGGTCAAACAAGTCATATTTCAGGCCACTTGTTTTTAGCAGCATTGTTCTCTTCCTTGGTAATATAATGTATGCAATGGCTTATGATCTGGATTCATTATCTATCCTGCTGATTGGTCGTATTCTTTGTGGTTTAGGTTCTGCAAGAGCTGTCAATAGACGCTACATCAGTGACTGTGTACCATTGAAAACACGCTTAAAGGCCTCTGCTGCATTTGTAAGTGCCAGTGCACTAGGAATGGCTGCTGGACCTGCTTTTGCTGGAATCCTCCAGATTAATAAGTCATTTTTTGGAATTACTCTTAATGAAAATACACTGCCTGGCTGGGTAATGGCAGCAGCATGGTTTGTATATCTTTTGTGGCTTTGGATATCATTTAAAGAACCTTCCCACGAGGATGAAGAAGATCACACTGGCGAGGGTAGCAGTGGAGGAAAAGCAGAGGAAGATGCTGTTAAGGATGGGTTGACCCAACCTCTTCTTTTAAGCTCACGGACTTCAGAAAAATTTATAGATGAGGAGGCTGATCTAGAAATTGATGACAGTGTAGAGTCTTCAGAAGACAGTCGAAAACCTGCAAGCTCAATTGTTGAGGCATATAAATTAGTCACGCCACCTGTAAAGGTGCAACTTTTGATATATTTTATGCTCAAGTATGCAATGGAGATATTGCTTTCTGAGTCAAGTGTTGTCACAGCATACTACTTCAATTGGACTACCAGCTCAGTTGCAATATTCCTTGCATTGCTTGGATTAACACTTTTACCAGTCAATGTTGTTGTTGGCAACTATATCAGCAACATGTTTGAGGACAGGCAAATTTTATTTGCTGCTGAAGTGTTTACATGCGTTGGTATCCTGCTAAGCTTCAATATGATATTCCCCTACTCAGTTACACAGTATGTGAGTGGAGCATTTATCACATTTGTATCTGCCGAAGTTCTTGAAGGTGTGAACCTTTCCTTATTATCAAAGGTCATGTCCTCAAGGTTAGCACGAGGGACCTACAACGGTGGTTTGCTGTCCACAGAAGCTGGAACATTGGCTCGAGTGCTGGCAGATGGTACAATAACATTAGCAGGTTACCTGGGGCAGGGTTTACTTTTGAATGTAACACTGCTGCCTACATTGATCATTGGAGTTATTTCACTCATCGCAACTGGCTACACTTACAATTCTCTCTACTAG___TAATTTATACTCTCATTCTTTCTGAAATCAAGTTGGCCGATGCTCTGGAGGTTTGTACAATAAAAATTGTTGGCGTGTTTTCAGTTATGTAACTATAGATGACATGCCAGAATATTTCAAATTTGCTGGCAGGAGAGAGAGCTATAGCCGTTTTGCAGGCTTTTCCTTTTTTTTGTGGAGAAAACTGACGTTTCCACATAAATGTGGATTTCTCTTTGTGGATTATAAGCAAAGTAATGACGCTCCATTTCTCATATGCTTATTAAATCTTACATGCCTGCGTTTATTTCCAGGAATCATTCAAAATGGACGGAACAACAGCCAGAATTTAATAAGTTGGTCAATTGTATGAATTTTTCTCTACTCGCGATCATCAAGTAGTCGAGAGCTTGGATCTAGTGTCATCATTCTTAATACACAGCCTTTATTTGGGGTAACA

Fln Alignment:

Contig2702___MVEFGKKLKERQYPEWQRYYINYKLMKKKVRQYAQQAQEGTQDRRHVLKEFSKMLDHQVEKTVLFFLEQQGHLASRLRALGEKCEALTQLNDVAEVHALREAYRALGQDLLKLLNFVEMNAIGVRKILKKFDKRFGYSFTDYYVTSRSNHPYSQLQQVFKHVGIGAVVGALSRNLTAFQNRGGSYLSIYDQPISALALQDPVIDEIKDAVERLTNSTNFLRFLGDMHLLLKRNYQGLPKRHSRSPN-HFVSLVLNLVNTFLYMVNTYIIVPTADKYSMSLGAAATLCGVIIGSMAVAQLVSSVYFSAWSNKSYFRPLVFSSIVLFLGNIMYAMAYDXXXXXXXXXXXXXXXXXSARAVNRRYISDCVPLKTRLKASAAFVSASALGMAAGPAFAGILQINKSFFGITLNENTLPGWVMAAAWFVYLLWLWISFKEPSHEDEEDHTGEGSSGGKAEEDAVKDGLTQPLLLSSRTSEKFIDEEAXXXXXXXXXXXXXSRKPASSIVEAYKLVTPPVKVQLLIYFMLKYAMEILLSESSVVTAYYFNWTTSSVAIFXXXXXXXXXXXXXXVGNYISNMFEDRQILFAAEVFTCVGILLSFNMIFPYSVTQYVSGAFITFVSAEVLEGVNLSLLSKVMSSRLARGTYNGGLLSTEAGTLARVLADGTITLAGYXXXXXXXXXXXXXXLIIGVISLIATGYTYN
B8LLM8______________MVEFGKKLKERQYPEWQRYYINYKLMKKKVRQYVQQSQEGTQDRRHVLKEFSKMLDHQVEKTVLFFLEQQGHLAGRLRALGEKCEALIQPNDLAEVHALREAYRDLGQDLLKLLNFVEMNAIGVRKILKKFDKRFGYRFTDYYVTTRSNHPYSQLQQVFRHVGIGAVVGALSRNLSVFQNHGNSYLSIYDQPISALALQDPVIDEIKDAVERLTNSTNFLHFLGQHALIIEEESPRPSEEYIQDQRYHFVSLVLNLVNTFLYMVNTYIIVPTADKYSMSLGAAATLCGVIIGSMAVAQLVSSVYFSAWSNKSYFRPLVFSSIVLFFGNTLYAMAYDLDSLSILLIGRILCGLGSARAVNRRYISDCVPLKTRLKASAAFVSASALGMAAGPAFAGILQINKSFFGITLNENTLPGWVMAAAWFVYLLWLWISFKEPSREDEESHIGETSSGGQAEEDAVKDGLTQPLLLSSRTSEKFLDEEAELEIDESVESSEDSRKPASSIVEAYKLVTPPVKVQLLIYFMLKYAMEILLSESSVVTAYYFNWTTSSVAIFLALLGLTLLPVNVVVGNYISNMFEDRQILFAAEVFTCVGILLSFNVIFPYSVAQYVSGAFITFVSAEVLEGVNLSLLSKVMSSRLARGTYNGGLLSTEAGTLARVLADGTITLAGYLGQGLLLNVTLLPTLIIGVISIFATGYTYN

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
2519			81	18	0.999994
2520			18	81	0.999994
2521	18	81			0.999994
2524			18	9	0.999994
2525	20			80	0.999996
2527	20	80			0.999996
2528			20	80	0.999996
2529		20		80	0.999996
2533			20	80	0.999996
2534			20	80	0.999996
2537	20			80	0.999996
2538		20		80	0.999996
2539		80	20		0.999996
2540	18	81			0.999994
2542	80		20		0.999996
2565	80		20		0.995493
2567		80	20		0.995493
2570		20		80	0.995493
2572	80		20		0.995493
2574	80	20			0.995493
2575	20		80		0.995493
2577			20	80	0.995493
2578			20	80	0.995493
2580		20	80		0.995493
2582	80		20		0.995493
2585			20	80	0.995493
2850			81	18	0.999994
2851		81	18		0.999994
2852	18		81		0.999994
2858			18	81	0.999994
2859		18		81	0.999994
2860		18		81	0.999994
2868	18	81			0.999994
2966			11	88	0.923564
2967		88		11	0.923564
2969	11	88			0.923564
2976	11			88	0.923564
2985	88		11		0.923564
2998		75	25		1.0
3000	75			25	1.0
3001	25		75		1.0
3002	12		87		0.992554
3004		75	25		1.0
3006		75	12	12	0.975346
3007	12		87		0.992554
3009	12	87			0.992554
3010	12		87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain