SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2701

Length: 2336 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene2701
CGTCGTGACCTTGGCTGTCACTCAATTCTATTTCTTCCGAAAAAGAGAGGGCTGATTTGGACAGTGAGAGCTGGGTTTGTGATGTGACCGCACCCTAATTCCAGTGATGTAAATGCACGATGATACTGTAACGCGTCTAGTCTATCTACATAGTGGAGAAGTGAATGTGAAGGAAGGAAGATACAAATCAGAAGAAGAGGGAAGTGATGGCTCATATAAGCGTGCCATCGAAGCGGCTGGTTCGGCCATGGAAGCTGCTGGATTTGGTTTCAGGCTTGCTGTTCTTGGCGGTCTTCGTATTTTTCCTCTGCGTATTTACTCCACTGGGAGATTCGTTAGCTGCATCGGGGAGACAAGCATTGGTGCTGAGCGGGGGAAGGGACAGAGATGGAGATCCCCAGCACAGAAAACGCTTTCTCAGAGTGGTTGAATCAGGGGAGGCAGCAGTGGAGGCCTGCCCCTTGGAATCCGTCGATTACTGTCCTTGCGAAGATCCACGACGGAGTAGCCATTTCACCAGAGAAAGAAATGTTTACAGAGAGAGGCACTGTCCTCCTCAAGATCAAAATCTCCTCTGCCTTATTCCACCACCTCTCGACTACAAAATTCCTCTGCCATGGCCTGAACGTCTCCACAAGATATGGCATAGCAATATGCCCCATAACAAGATTGCAGATCGGAAAGGGCATCAGGGCTGGATGAAGGCAGAAGGACCTTACTTCATATTTCCAGGTGGTGGCACCATGTTTCCCGATGGAGCAATACAATACATTCAGAAGCTGAAACAATATTTACCTATAAGTGGTGGAACCATCAGGACAGCTTTGGATGTTGGCTGTGGGGTTGCCAGCTTTGGAGGATACCTGCTTAAGGAAGATATATTAACCATGTCTTTTGCTCCCCGGGATTCACACAAGTCACAGATACAGTTTGCATTGGAAAGGGGCATACCTGCGTTTCTAGCAATGCTTGGAACCCACAGACTGCCCTTCCCTGCTCATGTATTTGACCTGATTCATTGTTCCCGATGTTTGGTACCCTTCACTGCTTACAATGGATCTTACATGATCGAGATGGACCGTTTGTTGCGATCAGGAGGCTACTTTGTCATCTCTGGACCTCCCGTGCAGTGGCCTAAACAAGAGAAAGAATGGGCTGACCTGCAGAATTTAGCGCACACATTATGTTACGAGTTGGTTACTATTGATGGCAACACTGCAATTTGGAAGAAACCTTCCAACAACTCGTGCTTCGCGTTGAAGAGTGTAACTGGACCTAATTTATGTGACGAACATGATGATCCCAACTTGGCATGGTATGTACCATTGAAAGAGTGTATTAGCCAGTTTCCACCATTGAAAGAGAAAGAGAACAGTTTAATCGAGCTTCCAAAGTGGCCAAGCCGGTTGAACGAACCTCCTCAGCATGCTGTAGACATAAAGAATTTTCTGGATATATTTAAAGCTGATACACGGAGATGGCAAAGGAGAGTGACATACTATAAGAATGTGCTGAATCTGAAGTTAGGATCTTCAAGTGTACGCAATGTTATGGATATGAATGCAGGTTTTGGTGGCTTTGCAGCAGCACTTATTGCAGATCCTGTCTGGATCATGAACGTTGTTCCTACTTATACAACAAATACTCTTGCTGTGATTTATGACAGAGGCCTTATTGGAGTTTATCATGACTGGTGTGAGGCCTTCTCTTCTTACCCTCGAACATATGATTTTATTCATGCAATTAGCATTGAATCTCTAATAAGAGATCTGAGTAGAGGTGGAAACAGATGTAGCCTTGTTGATTTGATGATTGAAATGGATAGAATTCTCCGGCCTGAAGGAACTGTTGTTGTCCGGGATACTCCTAAGGTCATTGATAGGGTTGCAAAGATTGCAAGTGCAATACGCTGGAGTACAGAAGTTTATGATACTGAGCCAGAGTCCAATCGCAAAGAGAAATTGCTAGTGGCCACCAAGCAGTTTTGGACTCTTTCCTCTATTTCAGGGTAACTGGCCCTTTCATCATGTTTTTTTCTTTAACAACTTCCAAAGTGGACTTCAGCAGTCTGCTAGCATGCAAGTTGATTGAAATGAACAATTTTTTAGGGACATGCCTGTAATGTGCAACCCAGATCACTTTGGAAGGATGGCCTTGGGGCCAAGCCTTGGAGTTGGGTCCCTGTTTTTGTAATTTGGTCCTCAGTATGTGGTATTTTATGTAACATTTCAAACTGGTGCCCATGCCTCTTTCGGCAACAATGTCATCAATCAATATTGCTTTTGCCAGAAACTTTTACCTAGTGTGCATCTTGCTCATAACAAATTATCCAAACC

Ace file of the UniGene sp_v2.0_unigene2701 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative methyltransferase PMT13 [Arabidopsis thaliana] sp\|Q93W95.1\|PMTD_ARATH RecName: Full=Probable methyltransferase PMT13 gb\|AAL24317.1\| Unknown protein [Arabidopsis thaliana] gb\|AAL24395.1\| Unknown protein [Arabidopsis thaliana] gb\|AAN15470.1\| Unknow	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	probable methyltransferase pmt13-like	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	0.0	78%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	78%
Blast2go	Tetracycline biosynthesis	00253	78%
Blast2go	Histidine metabolism	00340	78%
Blast2go	Tyrosine metabolism	00350	78%
Blast2go	Phenylalanine metabolism	00360	78%
Blast2go	Tryptophan metabolism	00380	78%
Blast2go	Benzoxazinoid biosynthesis	00402	78%
Blast2go	Selenocompound metabolism	00450	78%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	78%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	78%
Blast2go	Methane metabolism	00680	78%
Blast2go	Porphyrin and chlorophyll metabolism	00860	78%
Blast2go	Carotenoid biosynthesis	00906	78%
Blast2go	Phenylpropanoid biosynthesis	00940	78%
Blast2go	Flavonoid biosynthesis	00941	78%
Blast2go	Anthocyanin biosynthesis	00942	78%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	78%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	78%
Blast2go	Insect hormone biosynthesis	00981	78%
Blast2go	Biosynthesis of type II polyketide products	01057	78%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	78%
Blast2go	Metabolic pathways	01100	78%
Blast2go	Biosynthesis of secondary metabolites	01110	78%

Source	GOs	Term	Type	Identity
Blast2go	methylation	GO:0032259	Biological Process	78%
Blast2go	methyltransferase activity	GO:0008168	Molecular Function	78%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXM2

Fln msg:

Fln protein: MAHISVPSKRLVRPWKLLDLVSGLLFLAVFVFFLCVFTPLGDSLAASGRQALVLSGGRDRDGDPQHRKRFLRVVESGEAAVEACPLESVDYCPCEDPRRSSHFTRERNVYRERHCPPQDQNLLCLIPPPLDYKIPLPWPERLHKIWHSNMPHNKIADRKGHQGWMKAEGPYFIFPGGGTMFPDGAIQYIQKLKQYLPISGGTIRTALDVGCGVASFGGYLLKEDILTMSFAPRDSHKSQIQFALERGIPAFLAMLGTHRLPFPAHVFDLIHCSRCLVPFTAYNGSYMIEMDRLLRSGGYFVISGPPVQWPKQEKEWADLQNLAHTLCYELVTIDGNTAIWKKPSNNSCFALKSVTGPNLCDEHDDPNLAWYVPLKECISQFPPLKEKENSLIELPKWPSRLNEPPQHAVDIKNFLDIFKADTRRWQRRVTYYKNVLNLKLGSSSVRNVMDMNAGFGGFAAALIADPVWIMNVVPTYTTNTLAVIYDRGLIGVYHDWCEAFSSYPRTYDFIHAISIESLIRDLSRGGNRCSLVDLMIEMDRILRPEGTVVVRDTPKVIDRVAKIASAIRWSTEVYDTEPESNRKEKLLVATKQFWTLSSISG*

Protein Length: 603

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTATTTCTTCCGAAAAAGAGAGGGCTGATTTGGACAGTGAGAGCTGGGTTTGTGATGTGACCGCACCCTAATTCCAGTGATGTAAATGCACGATGATACTGTAACGCGTCTAGTCTATCTACATAGTGGAGAAGTGAATGTGAAGGAAGGAAGATACAAATCAGAAGAAGAGGGAAGTG_-_ATGGCTCATATAAGCGTGCCATCGAAGCGGCTGGTTCGGCCATGGAAGCTGCTGGATTTGGTTTCAGGCTTGCTGTTCTTGGCGGTCTTCGTATTTTTCCTCTGCGTATTTACTCCACTGGGAGATTCGTTAGCTGCATCGGGGAGACAAGCATTGGTGCTGAGCGGGGGAAGGGACAGAGATGGAGATCCCCAGCACAGAAAACGCTTTCTCAGAGTGGTTGAATCAGGGGAGGCAGCAGTGGAGGCCTGCCCCTTGGAATCCGTCGATTACTGTCCTTGCGAAGATCCACGACGGAGTAGCCATTTCACCAGAGAAAGAAATGTTTACAGAGAGAGGCACTGTCCTCCTCAAGATCAAAATCTCCTCTGCCTTATTCCACCACCTCTCGACTACAAAATTCCTCTGCCATGGCCTGAACGTCTCCACAAGATATGGCATAGCAATATGCCCCATAACAAGATTGCAGATCGGAAAGGGCATCAGGGCTGGATGAAGGCAGAAGGACCTTACTTCATATTTCCAGGTGGTGGCACCATGTTTCCCGATGGAGCAATACAATACATTCAGAAGCTGAAACAATATTTACCTATAAGTGGTGGAACCATCAGGACAGCTTTGGATGTTGGCTGTGGGGTTGCCAGCTTTGGAGGATACCTGCTTAAGGAAGATATATTAACCATGTCTTTTGCTCCCCGGGATTCACACAAGTCACAGATACAGTTTGCATTGGAAAGGGGCATACCTGCGTTTCTAGCAATGCTTGGAACCCACAGACTGCCCTTCCCTGCTCATGTATTTGACCTGATTCATTGTTCCCGATGTTTGGTACCCTTCACTGCTTACAATGGATCTTACATGATCGAGATGGACCGTTTGTTGCGATCAGGAGGCTACTTTGTCATCTCTGGACCTCCCGTGCAGTGGCCTAAACAAGAGAAAGAATGGGCTGACCTGCAGAATTTAGCGCACACATTATGTTACGAGTTGGTTACTATTGATGGCAACACTGCAATTTGGAAGAAACCTTCCAACAACTCGTGCTTCGCGTTGAAGAGTGTAACTGGACCTAATTTATGTGACGAACATGATGATCCCAACTTGGCATGGTATGTACCATTGAAAGAGTGTATTAGCCAGTTTCCACCATTGAAAGAGAAAGAGAACAGTTTAATCGAGCTTCCAAAGTGGCCAAGCCGGTTGAACGAACCTCCTCAGCATGCTGTAGACATAAAGAATTTTCTGGATATATTTAAAGCTGATACACGGAGATGGCAAAGGAGAGTGACATACTATAAGAATGTGCTGAATCTGAAGTTAGGATCTTCAAGTGTACGCAATGTTATGGATATGAATGCAGGTTTTGGTGGCTTTGCAGCAGCACTTATTGCAGATCCTGTCTGGATCATGAACGTTGTTCCTACTTATACAACAAATACTCTTGCTGTGATTTATGACAGAGGCCTTATTGGAGTTTATCATGACTGGTGTGAGGCCTTCTCTTCTTACCCTCGAACATATGATTTTATTCATGCAATTAGCATTGAATCTCTAATAAGAGATCTGAGTAGAGGTGGAAACAGATGTAGCCTTGTTGATTTGATGATTGAAATGGATAGAATTCTCCGGCCTGAAGGAACTGTTGTTGTCCGGGATACTCCTAAGGTCATTGATAGGGTTGCAAAGATTGCAAGTGCAATACGCTGGAGTACAGAAGTTTATGATACTGAGCCAGAGTCCAATCGCAAAGAGAAATTGCTAGTGGCCACCAAGCAGTTTTGGACTCTTTCCTCTATTTCAGGGTAA___CTGGCCCTTTCATCATGTTTTTTTCTTTAACAACTTCCAAAGTGGACTTCAGCAGTCTGCTAGCATGCAAGTTGATTGAAATGAACAATTTTTTAGGGACATGCCTGTAATGTGCAACCCAGATCACTTTGGAAGGATGGCCTTGGGGCCAAGCCTTGGAGTTGGGTCCCTGTTTTTGTAATTTGGTCCTCAGTATGTGGTATTTTATGTAACATTTCAAACTGGTGCCCATGCCTCTTTCGGCAACAATGTCATCAATCAATATTGCTTTTGCCAGAAACTTTTACCTAGTGTGCATCTTGCTCATAACAAATTATCCAAACC

Fln Alignment:

Contig2701___MAHISVPSKRLVRPWKLLDXXXXXXXXXXXXXXXXXFTPLGDSLAASGRQALVLSGGRDRDGDPQHRKRFLRVVESGEAAVEACPLESVDYCPCEDPRRSSHFTRERNVYRERHCPPQDQNLLCLIPPPLDYKIPLPWPERLHKIWHSNMPHNKIADRKGHQGWMKAEGPYFIFPGGGTMFPDGAIQYIQKLKQYLPISGGTIRTALDVGCGVASFGGYLLKEDILTMSFAPRDSHKSQIQFALERGIPAFLAMLGTHRLPFPAHVFDLIHCSRCLVPFTAYNGSYMIEMDRLLRSGGYFVISGPPVQWPKQEKEWADLQNLAHTLCYELVTIDGNTAIWKKPSNNSCFALKSVTGPNLCDEHDDPNLAWYVPLKECISQFPPLKEKENSLIELPKWPSRLNEPPQHAVDIKNFLDIFKADTRRWQRRVTYYKNVLNLKLGSSSVRNVMDMNXXXXXXXXALIADPVWIMNVVPTYTTNTLAVIYDRGLIGVYHDWCEAFSSYPRTYDFIHAISIESLIRDLSRGGNRCSLVDLMIEMDRILRPEGTVVVRDTPKVIDRVAKIASAIRWSTEVYDTEPESNRKEKLLVATKQFWT
A9NXM2______________MGHISVPSKRLVRQWKLLDLVSGLLFLAVFIFLLCVFTPLGDSLAASGRQSLVLSGGRDRNGDPQHRERFLRVVESGEAAVEACPLESVDYSPCEDPRRSSHFSRERNVYRERHCPPPDQNLLCLIPPPLDYKIPLPWPESLHKIWHSNMPHNKIADRKGHQGWMKEEGPYFIFPGGGTMFPDGAIQYIQKLKQYLPISGGTIRTALDVGCGVASFGGYMLKEDILTMSFAPRDSHKSQIQFALERGIPAFLAMLGTHRLPFPAHVFDLIHCSRCLVPFTAYNGSYMIEMDRLLRSGGYFVISGPPVQWPKQEKEWADLQDLARTLCYELVIVDGNTAIWKKPSNNSCFSLKSVPGPYLCDEHDDPNVGWYVPLKACISRFPSLKERENNLIELPKWPSRLNDPPQRATDIKNFLDIFKADTRRWQRRVTYYKNVLNLKLGSSSVRNLMDMNAGFGGFAAAVIADPVWIMNVVPAYTSNTLGVIYDRGLIGVYHDWCEAFSTYPRTYDFIHAIGIESLIRDLSRGGDRCSLVDLMIEMDRILRPEGTVVVRDTPKVIDRVAKIASAIHWSTEVYDTEPESNGKEKLLVATKQFWT

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
1735			50	50	1.0
1736		50		50	1.0
1738	50			50	1.0
2010		90	10		0.90298
2012		90		10	0.90298
2013	11	88			0.923564
2016	22		77		0.999999
2017	11			88	0.923564
2018		11	88		0.923564
2050	11	88			0.923564
2057	88		11		0.923564
2058	88			11	0.923564
2061		11	88		0.923564
2062		88	11		0.923564
2064	88	11			0.923564
2140		81		18	0.999994
2141		81	18		0.999994
2142	18			81	0.999994
2143		81	18		0.999994
2145	18			81	0.999994
2147	18			81	0.999994
2148			18	81	0.999994
2151		18	81		0.999994
2154	18			81	0.999994
2155			18	81	0.999994
2158	81	18			0.999994
2159	18			81	0.999994
2161			18	72	0.999994
2162	18			81	0.999994
2164		81	18		0.999994
2187	11	88			0.923564
2197	77	11		11	0.968132
2198		11	88		0.923564
2199	88	11			0.923564
2200		88	11		0.923564
2207	12	87			0.992554
2209		12		87	0.992554
2210		12		87	0.992554
2212	12	87			0.992554
2213	87		12		0.992554
2216	87	12			0.992554
2217	12			87	0.992554
2219	87		12		0.992554
2220	12			87	0.992554
2268	83			16	0.994512
2271	16			83	0.994512
2272		83	16		0.994512
2274		83	16		0.994512
2277	16			83	0.994512
2284	83		16		0.994512
2289	16	83			0.994512
2291		75	25		0.996473
2293		75		25	0.996473
2316			33	66	0.997452
2317	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain