SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2691

Length: 2163 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene2691
ATGGGATCACTTTACCTGCTCTAGTAATAGCAGTTCTCAGAGTCTTTAAGAATCAGCTCTGTTAAGCTGCCCATAGATCTGTCGAAAATGTTTAGTCTCGCTTTTACGTGTTCTTCCAATTCTAGCAATAACATCCTCTGTCGCTCTGAATGTTTTGCGGAGCAAGTACACGGTCCGAAGATATGCCTGAAAATCCCAGGAAAGAAGTTTGTCGAATGAATACCATGAAGCTGCCTTCTTTGAGAATTTCACAGCAGCAGAGGACCGGGTTGTGTAAGGCCTACAGTGTGCAAACCCAGACTGTTGTTGAGAAAGAGTTAATGCACGAAAGCCTTGCAATTAGTGAGGTACCGATAAAAGGAGTGCCGGTTATTGTGATGCTGCCTCTGGATACTGTGAAACCCAATGGGACCCTTAATCGAAAGCGCGCCCTGAATGCTAGCCTCATGGCGCTCAAAAGTGGAGGAGTGAAAGACGTAATGGTGGAGGTGTGGTGGGGCCTGGTGGAGAAAGATGGCCCTGGTAACTACAATTGGTCTGGATATAAGGAGCTCGTTGAAATGGTTAGCAAGCATGGGTTGAAGCTTCAGGCAGTAATGTCTTTCCATCAATGTGGAGGAAACGTTGGCGACACTTGCAATATTCCCTTACCTCGCTGGGCTTTGGAAGAAGTCGAGAGTAATCCAGATTTGGTATACACCGATAAGGCTGGAAGGAGAAACAAAGAGTATATCTCGTTAGGATGCGACACCCTGCCCGTGCTTAAGGGAAGAACGCCGATTCAGGTATACGCAGATTATATGAGAAGTTTCAGAGATACGTTCAGAGATATGCTCGGAAAAGTCATAGTGGAAATTCAAGTTGGAATGGGGCCTTGTGGGGAACTGAGATATCCCTCGTATCCTGAAAGCAACGGCACCTGGCGTTTCCCTGGGATTGGCGAATTTCAGTGCTATGACAAGTACATGAAGGCGTCCTTAAGAGCCCGTGCAGAGGCCGTTGGGAATGGCGAGTGGGGGCTAGACTGCCCTCGCGATTCAGGGAATTATAACCAGTTTCCGGAAGACACTGGCTTCTTTCGGAGAGAAGGAACATGGGACACCGATTATGGCAGATTCTTTCTCAATTGGTATTCGGAAATGTTACTTGCTCATGGTGACAGAATTCTGAGTGCTGCAGAAGGCGTTTTCAGGGGCAGCGGTGCCAAATTATCTGGAAAAGTTGCAGGGATCCACTGGCACTACGGCTCAAAATCTCACGCTGCAGAGCTGACTGCGGGATACTATAACACCAGAGAAAGCGATGGGTATCTCCCCATTGCACGCATGTTTAAGAAACACCGAACTGTTCTGAACTTCACCTGCTTCGAGATGAAAGATGATGAGCAGCCACAGCACGCACGGTGCAGTCCGGAGGGGCTTCTGAGACAGGTTACGGAGGCTACCAGGAAAACAGGTGTGGGCCTTGCTGGGGAGAATGCGTTGCAGAGGTTCGATGGAAGGGCATACGCCCAGATCATGCACAATTCAAATCTCAAGCCGCGTGATAGTAATGATAGCAAGTCCCAGATGTGTGCCTTCACGTATCTGAGGATGAACCAGCAAATGTTTCAGAGCGAGAATTGGCATCGCTTCGTGTGGTTTGTAAGGAACATGAGCGAGGGACGAACGCTGAGGCATGGAGAAGAGGATCGTTCTGAAACGGAGCTCAAGTTCAATGCCGCTGCGTATCTGAGAAATGATGCCGCAGCTCTGATGCACGCTTAGGTTTATTATTGATTCTGTCTACCAAAGTGTGTAATTAAGAGGGTGTATTATATGGTATCGGGATAAGTTGTGCTTATCAATAGGTTCGTGTGCAGTATGCTGAGAATAAAATGTCCAGAGCATAGTTTTATTAGTCAAGCGATTCAGCCTCATTTCCACTCTAAAATGTCCAGAGCATAGTTTTATTAGTCAAGCCATTCAGCCTCATTTCCATTAGATGTGAAGTATTTATACCAAAGGAATCCTCTACATACTGTATAAAGATTTATGAGTAGAATACTCAATACTTTCTATAACATTCTTCCCATTTGTAATGTCGACTTTATATCATCAATAAAAAGTAATTGTAAATTGATATTTATCTGACATATAAAAAGTTCTGCATTTATCATGTGTG

Ace file of the UniGene sp_v2.0_unigene2691

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	beta-amylase PCT-BMYI [Solanum tuberosum]	-	-	64%
FL-Next	sp=Beta-amylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	63%
Blast2go	protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-amylase.	EC:3.2.1.2	-	0.0	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	78%
Blast2go	Metabolic pathways	01100		0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	78%
Blast2go	maltose biosynthetic process	GO:0000024	Biological Process	78%
Blast2go	starch catabolic process	GO:0005983	Biological Process	78%
Blast2go	cation binding	GO:0043169	Molecular Function	78%
Blast2go	beta-amylase activity	GO:0016161	Molecular Function	78%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 14B, plant	IPR001371	-	-
Sma3	Glycoside hydrolase, family 14	IPR001554	-	-
Sma3	BZR1, transcriptional repressor	IPR008540	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 14, conserved site	IPR018238	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVE4

Fln msg: your sequence is longer than subject: 539 - 492

Fln protein: MFCGASTRSEDMPENPRKEVCRMNTMKLPSLRISQQQRTGLCKAYSVQTQTVVEKELMHESLAISEVPIKGVPVIVMLPLDTVKPNGTLNRKRALNASLMALKSGGVKDVMVEVWWGLVEKDGPGNYNWSGYKELVEMVSKHGLKLQAVMSFHQCGGNVGDTCNIPLPRWALEEVESNPDLVYTDKAGRRNKEYISLGCDTLPVLKGRTPIQVYADYMRSFRDTFRDMLGKVIVEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMKASLRARAEAVGNGEWGLDCPRDSGNYNQFPEDTGFFRREGTWDTDYGRFFLNWYSEMLLAHGDRILSAAEGVFRGSGAKLSGKVAGIHWHYGSKSHAAELTAGYYNTRESDGYLPIARMFKKHRTVLNFTCFEMKDDEQPQHARCSPEGLLRQVTEATRKTGVGLAGENALQRFDGRAYAQIMHNSNLKPRDSNDSKSQMCAFTYLRMNQQMFQSENWHRFVWFVRNMSEGRTLRHGEEDRSETELKFNAAAYLRNDAAALMHA*

Protein Length: 540

Fln nts: ATGGGATCACTTTACCTGCTCTAGTAATAGCAGTTCTCAGAGTCTTTAAGAATCAGCTCTGTTAAGCTGCCCATAGATCTGTCGAAAATGTTTAGTCTCGCTTTTACGTGTTCTTCCAATTCTAGCAATAACATCCTCTGTCGCTCTGA_-_ATGTTTTGCGGAGCAAGTACACGGTCCGAAGATATGCCTGAAAATCCCAGGAAAGAAGTTTGTCGAATGAATACCATGAAGCTGCCTTCTTTGAGAATTTCACAGCAGCAGAGGACCGGGTTGTGTAAGGCCTACAGTGTGCAAACCCAGACTGTTGTTGAGAAAGAGTTAATGCACGAAAGCCTTGCAATTAGTGAGGTACCGATAAAAGGAGTGCCGGTTATTGTGATGCTGCCTCTGGATACTGTGAAACCCAATGGGACCCTTAATCGAAAGCGCGCCCTGAATGCTAGCCTCATGGCGCTCAAAAGTGGAGGAGTGAAAGACGTAATGGTGGAGGTGTGGTGGGGCCTGGTGGAGAAAGATGGCCCTGGTAACTACAATTGGTCTGGATATAAGGAGCTCGTTGAAATGGTTAGCAAGCATGGGTTGAAGCTTCAGGCAGTAATGTCTTTCCATCAATGTGGAGGAAACGTTGGCGACACTTGCAATATTCCCTTACCTCGCTGGGCTTTGGAAGAAGTCGAGAGTAATCCAGATTTGGTATACACCGATAAGGCTGGAAGGAGAAACAAAGAGTATATCTCGTTAGGATGCGACACCCTGCCCGTGCTTAAGGGAAGAACGCCGATTCAGGTATACGCAGATTATATGAGAAGTTTCAGAGATACGTTCAGAGATATGCTCGGAAAAGTCATAGTGGAAATTCAAGTTGGAATGGGGCCTTGTGGGGAACTGAGATATCCCTCGTATCCTGAAAGCAACGGCACCTGGCGTTTCCCTGGGATTGGCGAATTTCAGTGCTATGACAAGTACATGAAGGCGTCCTTAAGAGCCCGTGCAGAGGCCGTTGGGAATGGCGAGTGGGGGCTAGACTGCCCTCGCGATTCAGGGAATTATAACCAGTTTCCGGAAGACACTGGCTTCTTTCGGAGAGAAGGAACATGGGACACCGATTATGGCAGATTCTTTCTCAATTGGTATTCGGAAATGTTACTTGCTCATGGTGACAGAATTCTGAGTGCTGCAGAAGGCGTTTTCAGGGGCAGCGGTGCCAAATTATCTGGAAAAGTTGCAGGGATCCACTGGCACTACGGCTCAAAATCTCACGCTGCAGAGCTGACTGCGGGATACTATAACACCAGAGAAAGCGATGGGTATCTCCCCATTGCACGCATGTTTAAGAAACACCGAACTGTTCTGAACTTCACCTGCTTCGAGATGAAAGATGATGAGCAGCCACAGCACGCACGGTGCAGTCCGGAGGGGCTTCTGAGACAGGTTACGGAGGCTACCAGGAAAACAGGTGTGGGCCTTGCTGGGGAGAATGCGTTGCAGAGGTTCGATGGAAGGGCATACGCCCAGATCATGCACAATTCAAATCTCAAGCCGCGTGATAGTAATGATAGCAAGTCCCAGATGTGTGCCTTCACGTATCTGAGGATGAACCAGCAAATGTTTCAGAGCGAGAATTGGCATCGCTTCGTGTGGTTTGTAAGGAACATGAGCGAGGGACGAACGCTGAGGCATGGAGAAGAGGATCGTTCTGAAACGGAGCTCAAGTTCAATGCCGCTGCGTATCTGAGAAATGATGCCGCAGCTCTGATGCACGCTTAG___GTTTATTATTGATTCTGTCTACCAAAGTGTGTAATTAAGAGGGTGTATTATATGGTATCGGGATAAGTTGTGCTTATCAATAGGTTCGTGTGCAGTATGCTGAGAATAAAATGTCCAGAGCATAGTTTTATTAGTCAAGCGATTCAGCCTCATTTCCACTCTAAAATGTCCAGAGCATAGTTTTATTAGTCAAGCCATTCAGCCTCATTTCCATTAGATGTGAAGTATTTATACCAAAGGAATCCTCTACATACTGTATAAAGATTTATGAGTAGAATACTCAATACTTTCTATAACATTCTTCCCATTTGTAATGTCGACTTTATATCATCAATAAAAAGTAATTGTAAATTGATATTTATCTGACATATAAAAAGTTCTGCATTTATCATGTGTG

Fln Alignment:

Contig2691___GVPVIVMLPLDTVKPNGTLNRKRALNASLMALKSGGVKDVMVEVWWGLVEKDGPGNYNWSGYKELVEMVSKHGLKLQAVMSFHQCGGNVGDTCNIPLPRWALEEVESNPDLVYTDKAGRRNKEYISLGCDTLPVLKGRTPIQVYADYMRSFRDTFRDMLGKVIVEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMKASLRARAEAVGNGEWGLDCPRDSGNYNQFPEDTGFFRREGTWDTDYGRFFLNWYSEMLLAHGDRILSAAEGVFRGSGAKLSGKVAGIHWHYGSKSHAAELTAGYYNTRESDGYLPIARMFKKHRTVLNFTCFEMKDDEQPQHARCSPEGLLRQVTEATRKTGVGLAGENALQRFDGRAYAQIMHNSNLKPRDSN--DSKSQMCAFTYLRMNQQMFQSENWHRFVWFVRNMSEGRTLRHGEEDR
A9NVE4______________GVPVFVKLPLDSVTSKHTVNRRKAMDASLMALKSAGVEGVMVNVWWGLVEREAPGEYNWSAYRELLEMVRKRGLKVQAVMSFHKCGGNVGDSVSIPLPKWVVEEIDRDNDLAYTDQWERRNYEYISLGCDNLPVLKGRTPVQCYSDFMRSFKENFTDLMGETVVEIQVGMGPAGELRYPSYPESNGTWKFPGIGAFQCYDKYMLANLKATAETAGKKEWGCGGPTNAGYYNNWSEETEFFCSEGGWNSPYGEFFLQWYSNMLLNHGERILAEAESIFHKSGARLSGKVAGIHWHYLTRSHAPELTAGYYNTGDRDGYLPIAQMFGRHGVVFIFTCIEMKDVEQPADAKCSPEKLIKQVIKATRKARIHLAGENALPRFDEAAYTQVLNNSCLRLEQDNPDDKIEPMCAFTYLRMSQHLFQSKNWSTFVSFVRRMSQQNAVSISRDEK

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
594	66			33	0.997452
680	50		50		1.0
681		50		50	1.0
725	90	10			0.90298
727			90	10	0.90298
728	90			10	0.90298
801		10		90	0.90298
804			90	10	0.90298
927		16		83	0.994512
940			83	16	0.994512
972	12		87		0.992554
999		75		25	0.996473
1014		25	75		0.996473
1069	83		16		0.994512
1127	85		14		0.993533
1188		20		80	0.999996
1221	90		10		0.90298
1233		90		10	0.90298
1251	90		10		0.90298
1257			10	90	0.90298
1260		90		10	0.90298
1266	90		10		0.90298
1314		90		10	0.90298
1316	20	80			0.999996
1317	10	90			0.90298
1362		20	80		0.995493
1701	80	20			0.995493
1703		80		20	0.995493
1704			80	20	0.995493
1775	25	75			0.996473
1869			33	66	0.997452
2082			11	88	0.923564
2107	85		14		0.993533
2123	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain