SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2671

Length: 1412 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2671

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyketide_cyc2 multi-domain protein	-	-	2.0e-07	20%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	abscisic acid receptor pyl4	-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	78%
Blast2go	receptor activity	GO:0004872	Molecular Function	78%
Blast2go	protein binding	GO:0005515	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Bet v I domain	IPR000916	-	-
Sma3	Pyrokinin, conserved site	IPR001484	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Zinc finger, C6HC-type	IPR002867	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Streptomyces cyclase/dehydrase	IPR005031	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAA4

Fln msg:

Fln protein: MCQPHQLWIFPDFARGFQDGDGESESRQRLQKAMVAEGAIGEEEDQYLQHNHHLHEAVGRYHSMRVTGNQCRSMVVKRVGAPVSTVWSMVRRFDCPQRYKRFIHHCSMQGDGNVGSTRHVRVISGLPAATSTERLEILDENRHIISFRVVDGDHRLQNYRSITTLHDCPVNGRPGTIVIESYVVDVPSGNNREETCLFADTIVRCNLQSLARMSEHSASTI*

Protein Length: 223

Fln nts: AAATGTTACATATTTGTTCACATTCTAAGGCTTCAGGCTCCTCTTCACGTATTTGTGAAGAAGAGGAGAAGGTATTTATGCAGAATACAAACAAGATCAAGAACAAGAACCAGATTTTCTCCAGCCATTTGATTTGGTGGGCAACCCGTAGCCATCCAAAATCCATCGCAAATATTTTCTCGAGGACAGAGGAATAGGCGGCGGAGGATCGATCCTTCAACCGCGATCCGCCGAATTGAGAAGCCCGCAAATGGAGGAGGCGCAGAAGTAAGGAAGGAAATTGACAATATTGGGTTTTCTTTGCTTACAAATCCCCCAGGTCGCGGGATCGAATCGTTCCGTGATCATCTGCAGAAGTACTGCGCTTGGTCTCCACGC_-_ATGTGTCAGCCACACCAGCTGTGGATATTCCCGGACTTTGCCCGCGGCTTCCAGGATGGGGATGGGGAATCGGAGTCGAGGCAGCGACTGCAGAAGGCGATGGTGGCGGAGGGGGCGATCGGCGAGGAAGAGGATCAGTACCTGCAGCACAACCATCATCTGCACGAGGCGGTGGGGCGCTACCACTCGATGAGGGTAACGGGCAACCAATGCCGCTCCATGGTGGTGAAGCGCGTCGGGGCGCCGGTAAGCACCGTGTGGTCCATGGTGCGCCGCTTCGATTGCCCGCAGAGGTACAAGCGTTTTATTCACCATTGCTCTATGCAGGGCGACGGCAACGTGGGCAGTACGCGCCATGTCAGGGTCATATCGGGGCTCCCCGCCGCGACCAGCACGGAGCGCCTCGAAATTCTGGACGAGAACCGCCACATCATCAGCTTCAGGGTCGTGGACGGCGACCACCGGCTCCAGAACTATCGCTCCATAACAACGCTGCACGATTGCCCTGTCAATGGCCGCCCCGGAACCATAGTTATCGAATCCTATGTCGTCGATGTTCCCAGCGGGAACAATCGAGAGGAAACTTGCCTGTTTGCTGACACCATCGTCAGATGCAACTTGCAGTCCCTCGCCCGAATGTCCGAGCATAGCGCTTCCACGATTTGA___CGGCCGGCCGCTTTTTGGACACGCAGACCGTTTTCCGAGGACACCCTTTGACTAATAAGATGTCTGGAACTGAACACAAATCCCGGCGGCGTGAAACGAGGAGAGACAGTGACTAGGTTATGATGGGCTTTTGGTTTGAGAAATTTAAATTATTTTGACTTTGCTCCATTAAATTCAGTGGCGTGCTTTGTAGGATGCTCAGCTTTACCTCTGGATGTCTCTGGTTCACTCTTTTAGCCTAGCCTGCTCTGTAGGAATATGTACTGTAACATGTGTCATGGGTTTCAATTTCCTCTGTGCAGAATCACTGGACCTAACGAATTTCTCTGTTAACATTTATGGCTTGATGGATGCTAGTGTTAGATTGA

Fln Alignment:

Contig2671___MCQPHQLWIFPDFARGFQDGDGESESRQRLQKAMVAEGAIGEEEDQYLQHNHHLHEAVGRYHSMRVTGNQCRSMVVKRVGAPVSTVWSMVRRFDCPQRYKRFIHHCSMQGDGNVGSTRHVRVISGLPAATSTERLEILDENRHIISFRVVDGDHRLQNYRSITTLHDCPVNGRPGTIVIESYVVDVPSGNNREETCLFADTIVRCNLQSLARMSEHSASTI
D5AAA4______________MCQPHQLWIFPDFARGFQDGDGESESRQRLHKAMVVEGAIGEGEE-YLQHNHHLHEAVGRYHSMRATGNQCRSMVVQRVGAPVTTVWSMVRRFDCPQRYKRFIHHCSMQGDGNVGSTRHVRVISGLPAASSTERLEILDEHRHIISFRIVDGDHRLRNYRSITTLHDCPVNGRPGTVVIESYIVDVPNGNNREETCLFADTIVRCNLQSLARMSEHSGSTI

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
1139		27	72		1.0
1242			85	14	0.993533
1243			14	14	0.984337
1245		14		85	0.993533
1249		85		14	0.993533
1250	85		14		0.993533
1254			14	85	0.993533
1256	85	14			0.993533
1257	14	85			0.993533
1261	14			85	0.993533
1379			40	60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain