SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2667

Length: 2520 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene2667
CGTCGTGACCTTGGCTGTCACTCAGTTGATCCGTTTGGGCACTCGGCCGTTCAAGCTTATCTTCTATCTGCTGAGGTTGGATTTGATGGACTGTTCTTTGGAAGAGCAGATTACCAAGACATTGCAAATAGGAGAAAGGATCGTACTATGGAGATGGTCTGGCGTGGTTCTAAGACCTTTGGGTCATCTGCAGAGGTATTCACTGGAATACTTCCAAACCTTTATGTTCCTCCCGCTGGCTTTGATTTTGGTATTGCAACGACAGAAGCTGTAATCCAGGATGATCCTCTTCTCTATGATTTTAATGTTGAGGAAAGGATCGATAGCTTTGTTCGCCTTGCTAGAGAACAGGCCAAAGAGTATCGTACAAATCATATGATATGGACTATGGGTGAAGATTTTGCATATGAAAGTGCGGGTACTTGGTTCAAACAGATGGATAAGCTCATACATTATGTGAATAAGGATGGTCGTGTTAATGCATTTTACTCAACTCCAACTATGTACACTGAAGAAAAATATGCATCCAATGAAATCTGGCCTTTGAAGACAGACGACTTTTTCCCCTATGCAGATCATTCAAATGCTTACTGGACAGGATATTTCACCAGTCGGCCTGCTCTGAAAGGTTACGTGAGAAAACTTTCAGGGCTTCTACAGGCAGCAAGGCAATTGGAGTTTCTTGTAGGTAGAAATAAGGGAAGGCCTAACACAGATTCTTTGGAGGAAGCAATGGCTCTTATTCAGCACCATGATGCAGTAGCTGGTACTTCAAAGCAACATGTGGCGGATGATTATGCCAAACGGCTTTCACAGAGCTCAGTAGAGGCCGAGAGTGTAATGAATTCTGCATTTCTTTGCCTTATAAGTGGCAAATCAAAGAAATATTGTGGGGATAAATTTTCCACTGTGAATCTAACTCATTCAAAGCATCAAGAGGAAAGTTTATTACAGGAAGAAGATTCAATGAGTACCTCAAGGCAGACAATAGAACTTGCACAGTGTCCTCTTATGAATATTAGTTACTGCCCCAAATCTGAAGCTGGCTTAGGAGATGGGAGGAGTTTGGTAATTGTGATATATAATCCTCTGGGATGGAGGCGCAAAGAAGTTGTCAGAATCCCGGTAACAAATTCAGCGGTGGACGTATTGAACTCAGATGGAAAGAAAGTGAAGGCGCAGATTGTTCCAATTGATGCAGCAACCAGAAGAGTTCGTAATTTCTACACACAGGACATTTCAGCTCCAGCTGGACCCCTGTTTAATCTCTTCTTTGAAGCTTCAGTTCCTGCTCTTGGTTACACAGTATATTTCCTGAAAGCTGCAAAGAATGGAGCTTCTTGGACTTCACTAGGGAAACCGGAACATATAAATGGAGAAGTAATTCTGGACTCAAGTAGGATCCAGATGGTGTTTTCCAATTCTACAGGGTCATTGATAGAGATCAGAGATCCTGAACATAAAGTAGCCTCCACTGTACATCAATCATATTGTTGGTACAATGCTAGTGATGGCAACACCACAAAGGGAATGTTTGAGGCTTCTGGTGCTTATGTTTTTCGTCCTAATACTTCAAGATGCTTCCCTGTTGGGACTTCTAGGAAGCAGGTTATTCAGTCAGTTATAAAGGGAGACCTAGTGAGTGAAGTGCATCAACAGTTTTCCCCATGGGTGTCACAGGTATTTAGGTTGTACAAGGATGCAAAGGATGCTGAAATAGATTTCATGGTTGGGCCAATTCCAATCAATGATGAGTTGGGTAAGGAAGTTGTAACACGATTCAGAATAGATATTCCATCAAACAAGGAGTTCTTCACAGATTCTAATGGTCGAGATTTTATAAAGAGAGTAAGGAATTACAGGAAGGATTGGAATTTGAGAATACATGAAGTGATTGCTGGAAATTATTATCCTTTGAATCTAGGCATGTACTTGAAAGACAATAAGACAGATCTTTCTTTACTTGTTGATCGTTCCGTCGGGGGTTCAAGCATTTTTGATGGAGAACTAGAGATCATGTTACATAGGCGATTGCTCCATGATGATAACAAGGGCGTGGCTGAAAATCTGAATGAAACCATATGCTTTGACAATAATAGGACTTGTGAAGGCTTGACAGTTCAAGGTAGAATCTATCTAAGTGTCAATTCTGTGGGAAAAGCTTCAGAATGGAGACGTACAAAGGGACAGAAAGCACTGCTTCCTCTTCAATTTTCATTTGCCATAATACCAGATAGTGAACAAAATCAGATAAAGAAACCTCAATATTCAGCCATGGCAGAAGACTATGAGCTACCACCTAATGTCGCCATCCTTACACTACAGGAACTGGAGGATCAACAAACCTTATTGCGTCTAGCACATCTTTATGAGGTTGGCGAAAGTGCAATTTTTTCGAAGACAGTAACTGTTGATATCTATAAACTATTTGCAGACCGCAAGGTTAAAAAGATTGTGGAGCTTAATCTTTCTGCAGCTATGGAGAAGTCACAAATGAAGAAATTAAATTGGAAAGACATT

Ace file of the UniGene sp_v2.0_unigene2667

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyl hydrolase family 38 protein [Arabidopsis thaliana] ref\|NP_851037.2\| Glycosyl hydrolase family 38 protein [Arabidopsis thaliana] gb\|AAM20555.1\| alpha-mannosidase [Arabidopsis thaliana] gb\|AAN15620.1\| alpha-mannosidase [Arabidopsis thaliana] gb\|AED	-	-	47%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	52%
Blast2go	lysosomal alpha-mannosidase-like	-	-	67%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	67%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	67%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	67%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	67%
Blast2go	Glycosaminoglycan degradation	00531	67%
Blast2go	Metabolic pathways	01100	67%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	67%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	67%
Blast2go	binding	GO:0005488	Molecular Function	67%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 38, core	IPR000602	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Glycosyl hydrolases 38, C-terminal	IPR011682	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Glycosyl hydrolase, family 13, all-beta	IPR013780	-	-
Sma3	Glycoside hydrolase, family 38, central domain	IPR015341	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SWM3

Fln msg: Distance to subject end: 41 aas, your sequence is shorter than subject: 840 - 992

Fln protein: RRDLGCHSVDPFGHSAVQAYLLSAEVGFDGLFFGRADYQDIANRRKDRTMEMVWRGSKTFGSSAEVFTGILPNLYVPPAGFDFGIATTEAVIQDDPLLYDFNVEERIDSFVRLAREQAKEYRTNHMIWTMGEDFAYESAGTWFKQMDKLIHYVNKDGRVNAFYSTPTMYTEEKYASNEIWPLKTDDFFPYADHSNAYWTGYFTSRPALKGYVRKLSGLLQAARQLEFLVGRNKGRPNTDSLEEAMALIQHHDAVAGTSKQHVADDYAKRLSQSSVEAESVMNSAFLCLISGKSKKYCGDKFSTVNLTHSKHQEESLLQEEDSMSTSRQTIELAQCPLMNISYCPKSEAGLGDGRSLVIVIYNPLGWRRKEVVRIPVTNSAVDVLNSDGKKVKAQIVPIDAATRRVRNFYTQDISAPAGPLFNLFFEASVPALGYTVYFLKAAKNGASWTSLGKPEHINGEVILDSSRIQMVFSNSTGSLIEIRDPEHKVASTVHQSYCWYNASDGNTTKGMFEASGAYVFRPNTSRCFPVGTSRKQVIQSVIKGDLVSEVHQQFSPWVSQVFRLYKDAKDAEIDFMVGPIPINDELGKEVVTRFRIDIPSNKEFFTDSNGRDFIKRVRNYRKDWNLRIHEVIAGNYYPLNLGMYLKDNKTDLSLLVDRSVGGSSIFDGELEIMLHRRLLHDDNKGVAENLNETICFDNNRTCEGLTVQGRIYLSVNSVGKASEWRRTKGQKALLPLQFSFAIIPDSEQNQIKKPQYSAMAEDYELPPNVAILTLQELEDQQTLLRLAHLYEVGESAIFSKTVTVDIYKLFADRKVKKIVELNLSAAMEKSQMKKLNWKDI

Protein Length: 841

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGATCCGTTTGGGCACTCGGCCGTTCAAGCTTATCTTCTATCTGCTGAGGTTGGATTTGATGGACTGTTCTTTGGAAGAGCAGATTACCAAGACATTGCAAATAGGAGAAAGGATCGTACTATGGAGATGGTCTGGCGTGGTTCTAAGACCTTTGGGTCATCTGCAGAGGTATTCACTGGAATACTTCCAAACCTTTATGTTCCTCCCGCTGGCTTTGATTTTGGTATTGCAACGACAGAAGCTGTAATCCAGGATGATCCTCTTCTCTATGATTTTAATGTTGAGGAAAGGATCGATAGCTTTGTTCGCCTTGCTAGAGAACAGGCCAAAGAGTATCGTACAAATCATATGATATGGACTATGGGTGAAGATTTTGCATATGAAAGTGCGGGTACTTGGTTCAAACAGATGGATAAGCTCATACATTATGTGAATAAGGATGGTCGTGTTAATGCATTTTACTCAACTCCAACTATGTACACTGAAGAAAAATATGCATCCAATGAAATCTGGCCTTTGAAGACAGACGACTTTTTCCCCTATGCAGATCATTCAAATGCTTACTGGACAGGATATTTCACCAGTCGGCCTGCTCTGAAAGGTTACGTGAGAAAACTTTCAGGGCTTCTACAGGCAGCAAGGCAATTGGAGTTTCTTGTAGGTAGAAATAAGGGAAGGCCTAACACAGATTCTTTGGAGGAAGCAATGGCTCTTATTCAGCACCATGATGCAGTAGCTGGTACTTCAAAGCAACATGTGGCGGATGATTATGCCAAACGGCTTTCACAGAGCTCAGTAGAGGCCGAGAGTGTAATGAATTCTGCATTTCTTTGCCTTATAAGTGGCAAATCAAAGAAATATTGTGGGGATAAATTTTCCACTGTGAATCTAACTCATTCAAAGCATCAAGAGGAAAGTTTATTACAGGAAGAAGATTCAATGAGTACCTCAAGGCAGACAATAGAACTTGCACAGTGTCCTCTTATGAATATTAGTTACTGCCCCAAATCTGAAGCTGGCTTAGGAGATGGGAGGAGTTTGGTAATTGTGATATATAATCCTCTGGGATGGAGGCGCAAAGAAGTTGTCAGAATCCCGGTAACAAATTCAGCGGTGGACGTATTGAACTCAGATGGAAAGAAAGTGAAGGCGCAGATTGTTCCAATTGATGCAGCAACCAGAAGAGTTCGTAATTTCTACACACAGGACATTTCAGCTCCAGCTGGACCCCTGTTTAATCTCTTCTTTGAAGCTTCAGTTCCTGCTCTTGGTTACACAGTATATTTCCTGAAAGCTGCAAAGAATGGAGCTTCTTGGACTTCACTAGGGAAACCGGAACATATAAATGGAGAAGTAATTCTGGACTCAAGTAGGATCCAGATGGTGTTTTCCAATTCTACAGGGTCATTGATAGAGATCAGAGATCCTGAACATAAAGTAGCCTCCACTGTACATCAATCATATTGTTGGTACAATGCTAGTGATGGCAACACCACAAAGGGAATGTTTGAGGCTTCTGGTGCTTATGTTTTTCGTCCTAATACTTCAAGATGCTTCCCTGTTGGGACTTCTAGGAAGCAGGTTATTCAGTCAGTTATAAAGGGAGACCTAGTGAGTGAAGTGCATCAACAGTTTTCCCCATGGGTGTCACAGGTATTTAGGTTGTACAAGGATGCAAAGGATGCTGAAATAGATTTCATGGTTGGGCCAATTCCAATCAATGATGAGTTGGGTAAGGAAGTTGTAACACGATTCAGAATAGATATTCCATCAAACAAGGAGTTCTTCACAGATTCTAATGGTCGAGATTTTATAAAGAGAGTAAGGAATTACAGGAAGGATTGGAATTTGAGAATACATGAAGTGATTGCTGGAAATTATTATCCTTTGAATCTAGGCATGTACTTGAAAGACAATAAGACAGATCTTTCTTTACTTGTTGATCGTTCCGTCGGGGGTTCAAGCATTTTTGATGGAGAACTAGAGATCATGTTACATAGGCGATTGCTCCATGATGATAACAAGGGCGTGGCTGAAAATCTGAATGAAACCATATGCTTTGACAATAATAGGACTTGTGAAGGCTTGACAGTTCAAGGTAGAATCTATCTAAGTGTCAATTCTGTGGGAAAAGCTTCAGAATGGAGACGTACAAAGGGACAGAAAGCACTGCTTCCTCTTCAATTTTCATTTGCCATAATACCAGATAGTGAACAAAATCAGATAAAGAAACCTCAATATTCAGCCATGGCAGAAGACTATGAGCTACCACCTAATGTCGCCATCCTTACACTACAGGAACTGGAGGATCAACAAACCTTATTGCGTCTAGCACATCTTTATGAGGTTGGCGAAAGTGCAATTTTTTCGAAGACAGTAACTGTTGATATCTATAAACTATTTGCAGACCGCAAGGTTAAAAAGATTGTGGAGCTTAATCTTTCTGCAGCTATGGAGAAGTCACAAATGAAGAAATTAAATTGGAAAGACATT

Fln Alignment:

Contig2667___VDPFGHSAVQAYLLSAEVGFDGLFFGRADYQDIANRRKDRTMEMVWRGSKTFGSSAEVFTGILPNLYVPPAGFDFGIATTEAVIQDDPLLYDFNVEERIDSFVRLAREQAKEYRTNHMIWTMGEDFAYESAGTWFKQMDKLIHYVNKDGRVNAFYSTPTMYTEEKYASNEIWPLKTDDFFPYADHSNAYWTGYFTSRPALKGYVRKLSGLLQAARQLEFLVGRNKGRPNTDSLEEAMALIQHHDAVAGTSKQHVADDYAKRLSQSSVEAESVMNSAFLCLISGKSKKYCGDKFSTVNLTHSKHQEESLLQEEDSMSTSRQTIELAQCPLMNISYCPKSEAGLGDGRSLVIVIYNPLGWRRKEVVRIPVTNSAVDVLNSDGKKVKAQIVPIDAATRRVRNFYTQ---DISAPAGPLFNLFFEASVPALGYTVYFLKAAKNGASWTSLGKPE--HINGEVILDSSRIQMVFSNSTGSLIEIRDPEHKVASTVHQSYCWYNASDGNTTKGMFEASGAYVFRPNTSRCFPVGTSRK--------QVIQSVIKGDLVSEVHQQFSPWVSQVFRLYKDAKDAEIDFMVGPIPINDELGKEVVTRFRIDIPSNKEFFTDSNGRDFIKRVRNYRKDWNLRIHEVIAGNYYPLNLGMYLKDNKTDLSLLVDRSVGGSSIFDGELEIMLHRRLLHDDNKGVAENLNETICFDNNRTCEGLTVQGRIYLSVNSVGKASEWRRTKGQKALLPLQFSFAIIPDSEQNQIKKPQYSAMAEDYELPPNVAIXXXXXXXXXXXXXXXAHLYEVGESAIFSKTVTVDIYKLFADRKVKKIVELNLSAAMEKSQMKKLNW
A9SWM3______________IDPFGHSAVQAYLLGAELGFDAFFFARADYQDIIKRRKERTMEVIWQGSKSLGASAQIFAGLLWHHYEPPHEFQFDISSTTSPIQDDPALFGYNVPKLVDLFVEYATNQSKEYRTNHVMWPMGDDFAYENANTWYKQIDKLIHYVNKDGRVSAFYSTPSIYLDAVHAANATWHLKTDDYFPYSDCPHCFWTGYFTSRPALKGYVRKLSALLQAARQVEFLVGKNSTGPNTDSLEEAVAILQHHDGVSGTEQQHVANDYAARLAAGESEAEMVFNKALASLIS-------------TNATVS----TSLVEE---------------CNLLNVSYCPPTEVELKPGKSFVVVTYNPLGWEREDFVRVPVSSSKIEVIDAENNVIPSQLIPITDADRKLRNKYVELHAGVNASTVPKFFLVFAAAVPPLGYTSFVVRPSSSNTTTAKMSSYETRRVGRSVYLKSSQLQLNFSKQTALLTQMKNKKTGVSTSLEQSYCWYNGSSGITAEDLNQASGAYLFRPNTSECFPFNSSHQTAFLSWTVAVQMTVFRGPLVEEVHQQFSPWVSQVTRVYTNVEHAEIQFTVGPIPIDDSNGKEIVTKITTPLKTEKSFYTDSNGRDFLKRVRDYRPDWDLEVIEPVAGNYYPLNLGIYMKDNESDVSVLVDRALGGSSIEDGQLEIMLHRRLLYDDHRGVAEALNETVC-SNDGHCEGLTVQGKFYINISPSEVAAEWRRIKGQQILMPLQLSFS---DGNTEPLRTPRFSALKVGYELPLNIAVMTLQELNEEEVLLRLANLFEVDESTRLSRTSTVDLLNLFPNHKIKEVKEVTLSANQEKSEVKKLEW

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1258		66		33	0.997452
1446		25	75		0.996473
1449		75		25	0.996473
1472	16	83			0.994512
1473	16	83			0.994512
1475		83	16		0.994512
1476		83		16	0.994512
1771	25		75		0.996473
1772	25			75	0.996473
1843	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain