SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2628

Length: 1761 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene2628 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	26%
Blast2go	gt-2-related protein	-	-	58%

Source	InterPros	Term	Type	e value	Identity
Sma3	SANT/Myb domain	IPR001005	-	0.0	-
Sma3	Myb-like domain	IPR017877	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXN9

Fln msg: your sequence is longer than subject: 375 - 322

Fln protein: MTEFLPRPNYAAMAVESNGFAFKSPPDLLLSSPRNPNGKASANEAKIPAGIPKPHAIGKEETTANGSSNPSTADHAGGDGSDGQDKTPRLPRWTRQEILVLIEGKRVVESRGKKSRVTVDGQNGQVNTESKWSSISSYCKRHGVSREPVQCRKRWSNLSGDYKKIRDWENSHVELQSFWAMRNDIRRENKLPGFFDREVYSILDKFIGKQDGSKEAIRVMQEPIFDSGRPCGGGEDTLFSDFEHSAEEEVAGSPEKEAAVMLDSPTTTAATPPQPHRHGVRTEKVPTPVAEKGTTSCASGQKRKRTSSEGESDSDLKDQLIAVLERNSRVLSAHVDAQNLNCQLDRNQRRDHADSLVGVLGKLADALGRIADKL*

Protein Length: 376

Fln nts: TGAAACATTCTCTGAGCCTGTTTGCCTTGTAAAGAGTGTCAAAAGGAGACAGCCCTCCAAATCGAAGGACAGGGCCTTGCTTTGGGACGCCCGTCCCGCCGTGCGGCCGACCCCCCTGCGGATCCTCTGCAATTTTTTCCTGTCCCGATGCCTTTCCCCGTCTGAGTCCGGAGCTTCAATTCTCGGGGGAATTCTCCGTTCTT_-_ATGACAGAATTCCTTCCCCGTCCCAATTACGCTGCGATGGCCGTGGAATCAAACGGCTTCGCATTCAAAAGCCCACCCGACCTGTTACTCTCGTCTCCTCGCAACCCCAACGGTAAGGCCAGCGCGAATGAAGCAAAAATTCCGGCCGGAATCCCCAAACCCCACGCAATCGGCAAGGAGGAGACTACCGCCAATGGCAGCAGCAATCCGTCTACTGCCGACCATGCCGGCGGCGACGGCAGCGACGGTCAGGACAAGACGCCTCGGCTCCCTCGCTGGACGAGGCAGGAAATCCTGGTCTTGATCGAAGGAAAAAGAGTGGTCGAGAGCCGCGGCAAAAAGTCCAGGGTAACCGTCGATGGTCAGAACGGTCAGGTAAATACAGAATCCAAGTGGTCTTCAATTTCATCTTATTGCAAGCGGCATGGGGTCAGCAGGGAGCCTGTCCAGTGTAGAAAACGGTGGAGTAATTTATCTGGGGATTACAAGAAGATCAGAGATTGGGAAAACAGTCATGTTGAATTGCAGTCCTTCTGGGCCATGAGGAACGATATCAGACGGGAAAACAAGCTTCCCGGGTTTTTTGATAGAGAAGTCTACAGCATACTGGATAAGTTCATCGGGAAACAGGACGGCAGTAAAGAGGCGATCAGGGTGATGCAAGAACCCATCTTTGATAGCGGGCGGCCTTGTGGTGGCGGCGAAGATACCTTGTTTTCTGATTTTGAGCATTCGGCCGAGGAAGAAGTTGCAGGCAGCCCTGAAAAGGAGGCGGCAGTGATGCTCGACAGCCCCACTACCACGGCTGCGACGCCACCCCAGCCCCATCGGCATGGTGTTAGGACTGAGAAGGTGCCAACTCCAGTTGCTGAGAAAGGAACGACCTCTTGTGCCTCTGGGCAAAAGAGGAAGCGAACTTCTTCTGAAGGAGAAAGTGACAGTGACCTTAAAGATCAATTGATTGCTGTTTTGGAAAGAAACAGCCGGGTGTTGAGTGCACATGTGGATGCACAGAATCTGAATTGCCAGTTGGATAGAAATCAGAGAAGGGACCATGCAGATAGTTTGGTAGGAGTTTTGGGAAAGCTTGCTGATGCTTTGGGAAGAATAGCTGACAAACTATAG___TTAATTTATATGATGGGCCAATGGAGTAAAATCCTATGGGTATTTTATCACAATATCAACATTACAGATACCGGTGACCTTTGGGCTGAGAGTGCATTGTACAGTTTACATATGAGATTGATATAGAGTTCCAATATTTTTTCACCCTTTTAGCTGGATTGAAATATTCATTCCTTATTCTGAATTTATGTACAGTTATTAATTTATACTCTCATGTTGAGAGGAATATAGGTAAGCTTACCAAAAGTGGTTCGAGAGTAATATGGAAAAGACAATGTAATAATTCATTATATGAGACATGTACAGACTACAGAGTAAATGTTAACCTTTGTTTGATGCTTTTGCTTCAAAACTTTTCGAATGGTTATTTTTCAAATTACCAATAATTCCCCAAGTTAATGTTACATGCCAAGAAGCACAAGATTTTACATGC

Fln Alignment:

Contig2628___PRWTRQEILVLIEGKRVVESRGKKSRVTVDGQNGQVNTESKWSSISSYCKRHGVSREPVQCRKRWSNLSGDYKKIRDWENSHVELQSFWAMRNDIRRENKLPGFFDREVYSILDKFIGK-----QDGSKEAIRVMQEPIFDSGRPCGGGEDTLFSDFEHSAEEEVAGSPEKEAAVMLDSXXXXXXXXXXPHRHGVRTEKVPTPVAEKGTTSCASGQKRKRTSSEGESDSDLKDQLIAVLERNSRVLSAHV----DAQNLNCQLDRNQ----------------------RRDHADSLVGVLGKLADALGRIADKL
A9NXN9______________PRWTLTEMLVLVREKWAVENELQLS----PSKSQFTGVSDKWSIISNRCAASHVQRTAGQCRKKWELLISDYKKIKEWER-QCGVESYWSLSHSAKREHKLPFYLERELFDVMDANLDKTPTACPDATFDSMDVAADSLFTA-------NDDSQDDMVKMQDPTASGSGNEP----LDSTI----------RH-----------------------KRRRCSSEDERDHG----IISVLRENCQNIQAVIRETTQAQMCSSQLDRDMYWKGIEVNKQVQLQTSELDRELRRKQGQDLIDVLGGLVNAVNRLVDTI

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1136		80		20	0.995493
1584	25			75	0.996473
1638			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain