SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2620

Length: 1508 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene2620 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WS02925.CR_M21 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02925_M21 3', mRNA sequence.	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	48%
Blast2go	dna-binding protein chloroplast	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	0.0	74%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	JmjC domain	IPR003347	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3		IPR013129	-	-
Sma3	WRC	IPR014977	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6I6E8

Fln msg: Separated hits, possible frame ERROR between 744 and 788, Distance to subject end: 332 aas, your sequence is shorter than subject: 503 - 1035

Fln protein: WCSKCNKRYCVCCTERWYPFQTEEEIAEACPFCRGNCNCKACLRRGSRLKVRTKQTSKADMVHYYQHTICLLLLLFNFQEEQIKEQVVEARIRGKSAENMEIPKAKIASDERLYCDNCNTSIVDFHRSCPDCSYDLCISCCRELREGRQPGGDSAESSQQQYTK*VYAQSENKKQKKIARGSTGWECRLQPVNSHTAHPLKPLPDWKVNSDGSIPCPPKERGGCGDNLLELTSMFESNWVAELEEKAxxxxxxxxxxxxxxxxSQPCSLCFKPNSQDKIELSDKSRRASNRKDSSDNYMYCPTVQDIKCENLQHFQKHWIRGEPVIVRNVLDDTSGLSWEPMVMWRAFRETTKGKFREETKTVNAIDCLDWYTVEINIHQFFKGYTEGRMHKDHWPEMLKLKDWPPSNYFEERLPRHGAEFISALPFQEYAHPKCGLLNLATKLPANCLKPDLGPKTYIAYGTREELGRGDSVTKLHCDMSDAVNVLTHTAEIKFSPSQRSEI

Protein Length: 504

Fln nts: TGGTGCTCCAAATGTAACAAACGTTACTGTGTCTGCTGCACTGAAAGATGGTACCCCTTTCAAACTGAGGAGGAGATTGCTGAGGCCTGTCCGTTTTGTCGGGGGAACTGCAATTGTAAAGCTTGTTTGCGGCGAGGAAGCCGTCTTAAGGTCCGCACGAAGCAGACAAGCAAAGCTGATATGGTTCATTATTACCAGCACACGATTTGTTTGCTCCTCTTGCTGTTTAACTTTCAAGAGGAGCAAATTAAGGAACAAGTTGTGGAGGCTAGGATCCGTGGAAAATCAGCAGAAAACATGGAGATTCCCAAGGCAAAAATTGCTTCAGACGAACGCCTTTACTGTGACAACTGCAATACCTCAATCGTAGATTTTCACAGAAGCTGCCCAGATTGTTCATATGATCTTTGTATTAGTTGTTGTAGAGAGCTTCGAGAAGGCCGTCAGCCTGGGGGTGATTCAGCAGAGTCATCTCAGCAGCAGTACACGAAGTGAGTTTATGCCCAGTCAGAGAATAAGAAACAAAAGAAAATAGCAAGAGGAAGCACAGGTTGGGAATGTCGGTTGCAGCCTGTCAACAGTCACACTGCACATCCGCTTAAACCATTGCCAGATTGGAAAGTTAATAGTGATGGTTCTATTCCATGCCCACCCAAAGAACGTGGTGGTTGTGGAGATAATTTGTTGGAGTTAACGAGCATGTTTGAATCAAATTGGGTTGCAGAACTTGAGGAGAAAGCACAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTCCCAGCCATGTTCTTTGTGCTTCAAGCCTAATTCGCAGGACAAGATTGAACTTTCTGATAAGTCAAGGAGAGCATCTAACAGGAAGGATAGCAGTGACAATTACATGTATTGTCCAACTGTTCAGGATATCAAGTGTGAGAATCTTCAACATTTTCAGAAGCATTGGATTAGAGGTGAGCCTGTGATTGTACGGAATGTGTTGGATGATACATCCGGATTGAGTTGGGAGCCAATGGTCATGTGGCGGGCTTTCAGGGAGACTACTAAGGGAAAGTTCAGGGAAGAGACAAAAACAGTGAATGCTATTGATTGCCTGGATTGGTATACGGTTGAGATAAATATTCATCAATTTTTTAAAGGTTATACGGAGGGGAGGATGCATAAGGATCATTGGCCTGAGATGTTGAAGTTGAAGGATTGGCCTCCCTCAAATTACTTCGAGGAACGGCTACCACGTCATGGTGCTGAATTTATCAGCGCGTTACCCTTCCAGGAGTATGCCCATCCTAAATGTGGGCTTCTAAATCTTGCCACAAAGCTTCCAGCGAACTGCTTGAAACCTGATTTAGGCCCAAAAACATATATAGCTTATGGCACCCGGGAAGAACTTGGTAGAGGAGATTCAGTGACTAAGTTGCACTGTGACATGTCTGATGCGGTCAATGTTCTAACACATACTGCTGAGATCAAGTTCTCTCCTTCACAGCGAAGTGAGATAG

Fln Alignment:

Contig2620___CSKCN-KRYCVCCTERWYPFQTEEEIAEACPFCRGNCNCKACLRRGSRLKVRTKQTSKADMVHYYQHTICXXXXLF-NFQEEQIKEQVVEARIRGKSAENMEIPKAKIASDERLYCDNCNTSIVDFHRSC--PDCSYDLCISCCRELREGRQPGGDSAESSQQQYTK*VYAQSENKKQK---KIARGSTGWECRLQPVNSHTAHPLKPLPDWKVNSDGSIPCPPKERGGCGDNLLELTSMFESNWVAELEEKAQxxxxxxxxxxxxxxxSQPCSLCFKPNSQDKIELSDKSRRASNRKDSSDNYMYCPTVQDIKCENLQHFQKHWIRGEPVIVRNVLDDTSGLSWEPMVMWRAFRET-TKGKFREETKTVNAIDCLDWYTVEINIHQFFKGYTEGRMHKDHWPEMLKLKDWPPSNYFEERLPRHGAEFISALPFQEYAHPKCGLLNLATKLPANCLKPDLGPKTYIAYGTREELGRGDSVTKLHCDMSDAVNVLTHTAEIKFSPSQRSEI
F6I6E8______________CSSCTRKRYCFECIAKWYPEKTRDEIESACPFCCGNCNCKACLREVLFVKANHKELDDSVKLQRLQYLLFKALPVLRHVHQEQKSEVEIEAKIRGVQLMESDITRSKLEKNERLYCDNCNTSIVDFHRSCPNPDCSYDLCLICCRELREGRQPGGSEAETSHQQFVERAHGQVADGKSKATTKRKRNGRVSEVELAADDS-KADVSNQFPDWRATGDGSIPCPPKERGGCGTAILELRRNFKANWVMKLIQSSExxxxxxxxxxxxxxxSQGCSLCWPNVTGRNSEQNSEMRKAAFRKHGHDNFLFCPNAVNITDDEIEHFQRHWMRGEPVIVRNVLDKTSGLSWEPMVMWRAFRETGAKTKFKEETRTVKAIDCLDWCEVEINIHQFFAGYLEGRMHKGGWPEMLKLKDWPSSTLFEERLPRHGAEFIAALPYCDYTDPKSGFLNIATKLPTESLKPDLGPKTYIAYGFPLELGRGDSVTKLHCDMSDAVNVLTHTAKVKVAPWQHKRI

SNPs (tot: 75)

Position	A %	C %	G %	T %	Probability
186		33		66	0.997452
273	23	76			1.0
323		90	10		0.90298
327	10	90			0.90298
331		10		90	0.90298
332		10	90		0.90298
334	10			90	0.90298
335		90	10		0.90298
336		90	10		0.90298
337		10		90	0.90298
338		20		80	0.999996
340		10		90	0.90298
343	88		11		0.923564
422	14			85	0.993533
425		85		14	0.993533
442	14	85			0.993533
460	14		85		0.993533
464	14	85			0.993533
465		71		28	1.0
466		71	28		1.0
467	33	16			1.0
472	71	28			1.0
477	28	71			1.0
478	28		71		1.0
479		71	28		1.0
480		75	25		1.0
481	75			25	1.0
484		25		75	1.0
488		80	20		0.999996
491			12	87	0.992554
497	12			87	0.992554
501	12	87			0.992554
503	87		12		0.992554
504		87	12		0.992554
508	87	12			0.992554
509			12	87	0.992554
510	12	87			0.992554
554		16		83	0.994512
556		16		83	0.994512
558	83			16	0.994512
787	80			20	0.995493
789	20			80	0.995493
790			20	80	0.995493
794	20	80			0.995493
795	80	20			0.995493
797		80	20		0.995493
802			20	80	0.995493
803			20	80	0.995493
805		20	80		0.995493
807		20		80	0.995493
808			20	80	0.995493
810	80		20		0.995493
919	28		71		1.0
938	28			71	1.0
946		28	71		1.0
948	28			71	1.0
949	28		71		1.0
950		71	28		1.0
951	71		28		1.0
952	71			28	1.0
959	71		28		1.0
1011		80	20		0.995493
1014	20		80		0.995493
1018			20	80	0.995493
1019	20	20			0.99255
1022	60	20	20		0.99255
1023		80	20		0.995493
1024		40		60	1.0
1026	40	20		40	1.0
1027	20	60		20	0.99255
1028			25	75	0.996473
1029	33			66	0.997452
1104	25			75	0.996473
1105	75	25			0.996473
1108	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain