SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2591

Length: 1162 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene2591 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sigma factor sigb regulation protein rsbq, putative n=1 Tax=Ricinus communis RepID=B9R708_RICCO	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	sigma factor sigb regulation protein rsbq	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Carboxylesterase.	EC:3.1.1.1	-	0.0	82%

Source	KEGGs	Term	Identity
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	82%
Blast2go	Drug metabolism - other enzymes	00983	82%
Blast2go	Metabolic pathways	01100	82%
Blast2go	Biosynthesis of secondary metabolites	01110	82%

Source	GOs	Term	Type	Identity
Blast2go	methyl indole-3-acetate esterase activity	GO:0080030	Molecular Function	82%
Blast2go	methyl jasmonate esterase activity	GO:0080032	Molecular Function	82%
Blast2go	methyl salicylate esterase activity	GO:0080031	Molecular Function	82%
Blast2go	carboxylesterase activity	GO:0004091	Molecular Function	82%
Blast2go	plastid	GO:0009536	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1M0

Fln msg:

Fln protein: MGVGSGLLEALNVRVVGSGRRILVLSHGFGTDQSVWQRILPYFVRDFRIVLYDLMCAGSVNPDNFDFQRYSSLYAYADDLITILEELNVDNCIFVGHSLSAMIGCMASIKQPDLFSKLVLFGASPRYSNDNEYEGGFDKQDIEKVFGAMESNYAAWVSGFAPLAVGGDVPVAVREFSRTLFNMRPDIALYVAKTVFETDMRGILGQVKVPCCVIQTSKDMAVPLGVAIYVKKHLGCNATLEILDTEGHLPHLSQPAKIIQLLKRVLQ*

Protein Length: 269

Fln nts: ATGGGGCCCCTTTGTGCTCTGGATTCCCACCGCCATTACCCACTGTGATTTATTTTCTCTTTCTCCCCCACCAAGATTGTTTGTGCGTTAGTCTAGAATTCATTGATTAGAAGTTGAAAGTTGCAAAAG_-_ATGGGTGTTGGCTCTGGACTACTTGAAGCTCTAAACGTGAGAGTGGTGGGATCCGGGAGGCGCATTCTGGTTCTCTCTCATGGCTTCGGCACAGATCAGTCTGTATGGCAACGCATTTTGCCATATTTTGTCAGAGATTTCCGCATTGTGTTGTATGATTTGATGTGTGCTGGGAGTGTGAATCCTGATAACTTCGATTTCCAACGATACAGCTCTTTGTACGCCTATGCCGACGATCTCATAACAATTCTGGAGGAGCTCAATGTCGATAACTGCATATTTGTTGGACATTCTCTCTCCGCCATGATCGGCTGCATGGCTTCCATCAAGCAACCCGACCTCTTTTCCAAACTGGTCCTCTTTGGAGCCTCTCCAAGGTACTCGAATGATAACGAGTATGAAGGGGGATTCGATAAGCAGGACATAGAGAAAGTGTTCGGCGCCATGGAATCGAATTACGCGGCCTGGGTTTCAGGGTTTGCACCCCTGGCTGTCGGAGGGGACGTGCCTGTAGCAGTGCGCGAATTCAGCCGAACTCTGTTCAATATGAGGCCCGACATCGCCCTGTATGTTGCCAAAACTGTTTTCGAGACCGATATGAGGGGCATTCTGGGGCAAGTCAAGGTTCCATGCTGTGTGATTCAGACTAGCAAAGACATGGCAGTACCTCTTGGAGTTGCAATCTACGTGAAAAAACATCTGGGTTGCAATGCAACTCTTGAAATACTGGACACAGAGGGCCATCTGCCTCATCTCAGCCAGCCTGCTAAGATAATTCAGCTCCTGAAACGCGTGTTGCAGTGA___TATTTGCCTTTGCAGGCTTAGGTTTGTTATTGTGAATATTGACAAGATATAATAATTATTACAATAGAATTTGCCCCCACACTACTACTGCCACGAACACTGATACCAGCATTGTGGAGGTGCCGTTATCTTATATGCATTTCATATGTTTTGCTTTAGCCAGCAACATTGTTTTTCTCTGTCTGTAACTTGCATATATAATATTTTCTGATAAGAAAGCCTTATAATA

Fln Alignment:

Contig2591___MGVGSGLLEALNVRVVGSGRRILVLSHGFGTDQSVWQRILPYFVRDFRIVLYDLMCAGSVNPDNFDFQRYSSLYAYADDLITILEELNVDNCIFVGHSLSAMIGCMASIKQPDLFSKLVLFGASPRYSNDNEYEGGFDKQDIEKVFGAMESNYAAWVSGFAPLAVGGDVPVAVREFSRTLFNMRPDIALYVAKTVFETDMRGILGQVKVPCCVIQTSKDMAVPLGVAIYVKKHLGCNA-TLEILDTEGHLPHLSQPAKIIQLLKRVLQ
A9P1M0______________MGVESELLGVLNVKVIGSGQRILVLAHGFGADQSVWQYILPYLVAHYKVIVFDMVFSGNVDPKHFDFDRYTSLSAYTADLLGILDELKVDKCLYVGHSVSGMVGCLASIERPELFEKLILLCASPRYLNDESYHGGFERGEIDRLYCAMKSDYAAWVSGFAPLAVGVDEPSVVKEFSRTMMNMRPEIALLVARTIFESDMRSILSDVKTPCSIIQTAKDIVVPMAVPYHMQGSLGGKMNSVDILDEDGHLPQLTNPGLLLHAFKRVLE

SNPs (tot: 3)

Position	A %	C %	T %	Probability
1034	16		83	0.994512
1080	66	33		0.997452
1083	66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain