SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2589

Length: 1932 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2589

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ZIP metal ion transporter-like protein [Arabidopsis thaliana] sp\|Q9C9Z1.2\|ZTP50_ARATH RecName: Full=Putative zinc transporter At3g08650 gb\|AEE74659.1\| ZIP metal ion transporter-like protein [Arabidopsis thaliana]	-	-	58%
FL-Next	Isoform 2 of Putative zinc transporter At3g08650 OS=Arabidopsis thaliana GN=At3g08650	-	-	66%
Blast2go	zinc transporter at3g08650-like	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	metal ion transport	GO:0030001	Biological Process	78%
Blast2go	transmembrane transport	GO:0055085	Biological Process	78%
Blast2go	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	78%
Blast2go	membrane	GO:0016020	Cellular Component	78%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	PEP-utilising enzyme, C-terminal	IPR000121	-	-
Sma3		IPR000173	-	-
Sma3	Zinc/iron permease	IPR003689	-	-
Sma3		IPR008512	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9C9Z1-2

Fln msg: atg_distance in limit (1-15): atg_distance = 11,

Fln protein: MVGAIGIRQQLSAEKSDQVDAAPTRKLETSGIGASGREAGSGDSRDDIIKFEGHKDGDKRVPVSTVAWLTLVMAAATGFGAVPFFFVEIEAQWAGICNGLAAGVMLAASFDLVQEGQEYGGGSWVVIGILAGGIFILCCQKWLERYGEVSMLDIKGADARKMVLVVGIMTLHSFGEGSGVGVSFAGSKGLSQGVLVTIAIAVHNIPEGLAVSMVLASRGVSPTNALIWSVITSLPQPLVAVPAFICAEAFHKFLPFCMGFAAGCMIWMVIAEVVPDSFKEASPSQVATAATLAVAFMETLSAVLETFEHGQSWKNTSGFLVSLLFGLGPFIGGLILVTFASSVKMQHSFLTGMASGIAIILAAWRPLQLWVGGKMGLFYDISLLVGGAFFFHVISRMTSLNVFQGRAAGNDIMRSNTISPLTLKAFLACGAVALHAFAEGLALGVAAPKAYGLGRHMMLPVSLHGLPRGAAVASCIYGATDSWRSALFAAAFTGFAGPLAAIGAIVAEIDYTGLDTWMVFACGALLPAFGGSLIRRFFKLNSKHTSYGLVIGLAFAFVCLTSTRLVCLHTPYCNSAPEAVT*

Protein Length: 583

Fln nts: GGCTTTGCCTTGGCAGATTTG_-_ATGGTTGGTGCCATCGGAATAAGGCAGCAACTGAGTGCTGAAAAATCTGATCAAGTTGATGCGGCGCCGACTCGGAAATTAGAAACCTCAGGCATTGGAGCATCAGGGAGAGAGGCTGGTAGCGGTGATAGTAGAGATGACATCATCAAGTTTGAGGGACACAAGGATGGAGATAAAAGAGTGCCAGTGTCTACTGTTGCCTGGCTAACATTGGTAATGGCAGCGGCAACAGGCTTTGGTGCAGTGCCTTTCTTCTTTGTAGAAATAGAAGCACAGTGGGCTGGAATATGCAATGGGTTAGCAGCGGGAGTCATGTTGGCAGCAAGCTTTGACCTTGTTCAAGAAGGTCAGGAATACGGCGGTGGCAGCTGGGTTGTAATTGGCATCCTGGCTGGAGGAATTTTCATTTTATGCTGTCAGAAGTGGCTGGAACGATATGGTGAAGTTAGCATGCTAGATATAAAAGGGGCAGATGCCAGAAAGATGGTCCTGGTGGTTGGAATAATGACTCTTCATTCATTTGGCGAAGGTTCAGGTGTTGGAGTCTCCTTTGCAGGCTCAAAAGGACTGTCACAAGGTGTTTTGGTAACTATAGCCATCGCTGTGCACAACATTCCAGAAGGCTTAGCTGTGAGTATGGTTCTGGCATCACGTGGGGTTTCTCCAACCAATGCACTGATATGGAGTGTCATTACGTCCTTGCCACAGCCTCTGGTGGCTGTTCCAGCATTCATATGCGCTGAAGCCTTCCACAAATTCTTGCCATTCTGCATGGGTTTTGCAGCTGGCTGTATGATATGGATGGTAATTGCAGAAGTTGTGCCTGATAGTTTTAAGGAAGCATCTCCATCTCAAGTTGCCACAGCTGCTACACTGGCTGTAGCATTTATGGAGACACTTAGCGCAGTCCTTGAAACTTTTGAACATGGACAAAGTTGGAAGAATACATCAGGCTTCCTGGTTTCACTTCTTTTTGGCCTTGGACCTTTCATTGGAGGTCTTATTCTTGTAACATTTGCAAGCTCGGTCAAGATGCAACATTCATTCCTTACAGGAATGGCTTCAGGTATAGCTATTATTTTAGCTGCGTGGAGACCATTGCAGTTATGGGTTGGAGGTAAAATGGGCTTATTCTATGATATAAGCCTGCTTGTGGGAGGTGCTTTTTTCTTTCATGTGATAAGCCGTATGACAAGTCTGAATGTGTTCCAAGGCCGAGCTGCTGGAAATGACATTATGAGGTCAAACACTATAAGTCCTCTTACATTGAAGGCTTTTTTAGCTTGTGGAGCAGTGGCATTACATGCATTTGCAGAAGGGCTTGCTTTGGGTGTTGCTGCACCTAAAGCTTATGGGCTGGGTAGACATATGATGCTACCTGTCTCTCTCCATGGACTTCCAAGAGGTGCTGCTGTGGCAAGCTGTATATATGGTGCAACAGATAGCTGGCGTAGTGCTCTATTTGCTGCAGCCTTTACGGGGTTTGCTGGTCCACTTGCTGCTATTGGGGCTATTGTGGCAGAAATTGATTACACTGGGCTTGACACGTGGATGGTTTTTGCCTGTGGTGCTTTGCTTCCTGCATTTGGAGGCAGTCTTATCCGTCGCTTTTTCAAGTTAAATTCTAAACATACTTCGTATGGATTGGTGATAGGTCTGGCCTTTGCATTCGTATGCCTCACAAGTACAAGATTAGTTTGCTTGCATACTCCTTATTGCAATTCTGCCCCTGAAGCTGTAACATAA___GAAATTTATGCTGGCAAGTCAGAGTTTTTATAGATTCAATACACCCTCTTTTATCACTCAGTTATTGCCAATCTTGCAGCGCCATGGAATAACCTTGTTTATGTCACTGAAAGAAAATGTTGTTTTCGACAAACGATTTTTTGTTTCAAACTATATTCATGTTGC

Fln Alignment:

Contig2589___EKSDQVDAAPTRKLETSGIGASGREAGSGDSRDDIIKFEGHKDGD-KRVPVSTVAWLTLVMAAATGFGAVPFFFVEIEAQWAGICNGLAAGVMLAASFDLVQEGQEYGGGSWVVIGILAGGIFILCCQKWLERYGEVSMLDIKGADARKMVLVVGIMTLHXXXXXXXXXXXXXXXXXLSQGVLVTIAIAVHNIPEGLAVSMVLASRGVSPTNALIWSVITSLPQPLVAVPAFICAEAFHKFLPFCMGFAAGCMIWMVIAEVVPDSFKEASPSQVATAATLAVAFMETLSAVLETFEHGQSWKNTXXXXXXXXXXXXXXXXXXXXVTFASSVKMQHSFLTGMASGIAIILAAWRPLQLWVGGKMGLFYDISLLVGGAFFFHVISRMTSLNVFQGR---AAGNDI--MRSNTISPLTLKAFLACGAVALHAFAEGLALGVAAPKAYGLGRHMMLPVSLHGLPRGAAVASCIYGATDSWRSXXXXXXXXXXXXXXXXIGAIVAEIDYTGLDTWMVFACGALLPAFGGSLIRRFFKLNSKHTSYGLVIGLAFAFVCLTSTRLVCLHTPYCNSAPEAV
Q9C9Z1-2____________EVSHKVRASPHENMGRNVIDGSGVEKTLHDIG------MGEKRGTHNKVSVSTVALFTLAMAAATGLGAVPFFFVELDPQWAGICNGMAAGVMLAASFDLVKEGQEHGSGNWVVTGILAGALFIWLCKQILEQYGEVSMLDIKGADATKVVLVIGIMTLHSFGEGSGVGVSFAGSKGFSQGLLVTLAIAVHNIPEGLAVSMVLASRGVSPQNAMLWSIITSLPQPLVAVPAFLCADAFSKFLPFCTGFAAGCMIWMVIAEVLPDAFKEASPSQVASAATISVASMEALSTLFESFTHDYNSEDASGFFVSLLFGLGPLLGGVFLVASAVTFRLQHALLMGVASGIAFVLGLWRPLQLLLSAKMGLIPLVSLLAIGAGLSHFTS-STILNV-TGRKKSRAGSLINPVTNFPTSVITLQSLLACGAVGFHALAEGLALGVAAPNAYGLGRHMVLPVSLHGLPRGTAVASCVFGATDSWHAALAAAALIGFVGPISAIGSILAGIDYSGLDHVMVVACGGLLPSF-WQVIKRAVRLERRKGSVGMVLGLACAVVCLTFTRLVCLHTPYCNSAPEAV

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
1150			66	33	1.0
1211		40		60	1.0
1217	40		60		1.0
1389	75			25	0.996473
1390		25	75		0.996473
1391	75		25		0.996473
1454	80	20			0.995493
1455	20			80	0.995493
1570	83		16		0.994512
1598			22	77	1.0
1600		22		77	1.0
1602		77		22	1.0
1603			22	77	1.0
1604	22			77	1.0
1609		77	22		1.0
1610	77	22			1.0
1612			22	77	1.0
1615		22	77		1.0
1617		22	77		1.0
1618			77	22	1.0
1791		31		68	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain