SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2585

Length: 2852 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene2585
CGTCGTGACCTTGGCTGTCACTCAATTATAGTTTTGTGTAATCGAAATCCTTCTTCTGTGTTATCACTTATCAATGCCAATCTCTTCATGGCCACAGGCACTCTCACAGCATGATACGGTACTCTGTGTCCCACCTTGCAGTGCTGGTTTTTGCGTTGAGGTGAGACAGAAGATGATTACCTATGGAGAATAGGAATATACCTCTATGTACTAACAAGATTGACTGGTACTACCCTCAAATGGATCTTGAAGTAGGGGCCTATGCCCATGTTGCACAGAAAGAATCTTGGAAGACTATTTTGACTTTGGCTTATCAAAGCCTTGGAGTAGTCTATGGAGATTTGAGTATATCTCCACTTTATGTTTACAGAAACACTTTTGCCGGAGATATTGAGCACTCTGATACCAACGAGGAGATATATGGAGTATTGTCCTTTGTCTTCTGGACTCTAACCTTGATACCACTGTTTAAGTATGTTTTTATAGTTCTAAAAGCTGATGACAATGGAGAAGGTGGAACTTTTGCATTGTATTCTCTATTATGCAGGCATGCCAAAATTAGCCTTTTGCCAAATTGCCAAGTGGCTGATGAGGAGCTTTCAACATACAACATTGATGATTTCCCTCAGACAAAGACTGGGTCAAGGGTGAAAAGTGTGCTTGAAAAATGTAGATTTTTTCACACTATGTTGCTTATTGTTGCTCTAATTGGCACATGCATGGTTATTGGAGATGGGGTCCTGACTCCCGCCATTTCTGTTTTTCTGCAGTGTCAGGCCTCGAACTCTCAATGTCACACCATGAATATGCGGTGGTTCCTATTGCATGTCTTATACTGGTAGGCCTATTTGCACTACAACACTATGGCACACATCGGGTGGGATTCATGTTTGCACCAATTGTTTTGACTTGGCTACTATGCATCAGTGCGATTGGCCTCTATAATATTATTCGCTGGAATCCACATGTATATCAAGCACTCTCTCCATATTACATGTACAACTTTTTGAAGAAGACACAAAGAGGGGGTTGGATGTCCTTGGGAGGCATTCTATTGTGCATCACAGGTTCAGAGGCAATGTTTGCAGATCTCGGGCACTTCTCGCAATTATCAATCAAGATTGCTTTTACTTCCCTAGTCTACCCTGCACTAATTTTGGCATACATGGGCCAAGCTGCATATATCTCAACACATCATGACTTCACTGGTGCTTATCAAATTGGCTTTTACGTATCTGTACCTGAACATCTAAGATGGCCAGTACTGGCAATTGCAATACTTGCATCTGTGGTTGGAAGCCAAGCAGTCATCACTGGGACATTTTCAATCATTAAACAATCCTTGGCATTAGGCTGCTTTCCAAGAGTGAAAGTGGTGCACACATCTGATAAAATATATGGGCAGATATACATTCCAGAAATCAACTGGATATTAATGAGCCTCTGTCTTGCTGTTACGATTGGTTTTAGGGACACTAAACACATGGGAAATGCTTCCGGTTTGGCTGTCATCACTGTTATGTTGGTCACAACATGTCTCATGTCACTAGTAATTATTTTGTGCTGGCACAAAAATGCCTTGCTAGCTTTTCTCTTTATCCTCTGCTTCGGATCAATTGAGGCCCTCTACTTTTCAGCTTCTCTCATTAAATTTCTGGAAGGAGCCTGGGTACCTTTAGTTCTTGCATTCATATTCATGTTTGTAATGTATGTATGGCACTATGGAACAATTAAGAAATATGAGTTTGACTTGCAAAATAAGGTCTCCATGAAGTGGCTGCTTGGTCTTGGACCAAGTCTGGGGATTGTGCGTGTTCCTGGTATTGGACTTATACATACAGAGCTGGTCACAGGAGTACCTGCAATTTTTACGCATTTTGTAACCAATCTTCCAGCATTCCATCAGGTGCTTGTCTTTGTGTGTATCAAATCAGTGCCAGTACCTTATGTCCGGCCAGAGGAACGATATCTTATAGGGCGTATTGGGCCTAAGGAGTACAGGCTATATAGATGCATTGTTAGGTACGGATATCGTGATGCCCACATAGATGACCATGAATTTGAGAATCAGCTTGTTTTCAGCATTGGAGAGTTTATTCGTTCAGAGAGGCAAAATTTGTCCCCAAATGTGGATTCTTCTCAAGATGGGAGAATGACTGTAATAGGAACTCCAAGGAGAGAAGATATGATAAGTGATGAAACAGACGAGTGTATGCAATCTGCTTCTGCATCAAATCCTAGGTCCCCAATTATTCAAAGCATCCATGATATTATAGAGGTAAACTCTCCTAAACTTGTAAGGAGAAAGAAAGTGAGATTTTTGTTGCCCAATAGCCCTGAAATGGATCGCACTGTAAGAGATGAGCTGCAAGAACTTTCAGACGCTAAGGAAGCTGGAACTGCCTTTATAATAGGCCACTCCTATGTGAAAGCAAAAAGAGGCTCTTCTTTTCTTAGGAAGTTCGTTATCAATGTGGCGTATGAGTTTCTCAGAAAGAACTGCAGGGGACCATCGGCTGCTTTGAATATACCTCATATTTCACTTTTAGAGGTCGGCATGGTTTATCAAGTTTAAGTCATAGTGTTTGTAACCTAATATATATTTGCTCTGGCTTATGTTACCTTACTAACACTTGTATTAATACTTTTTGGGCTGAACTCCTTGTAAGCCATGAGAAATAGACTGTAATAAAATGCACAACCATGAATAATTTCCTGGAATACGTCATTTGGAAATACACCCAGAAATGCTGCATTCAGTGCTCTTTAGGTACAAAGAGCTTAGAGAACTTGTATAATTATTCATGATTAAACTCATTTCTGAATTGTGTACTGAATTCATTTGAAAAAAA

Ace file of the UniGene sp_v2.0_unigene2585

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Potassium transporter, putative n=1 Tax=Ricinus communis RepID=B9RUB7_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	high affinity potassium transporter	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%
Blast2go	potassium ion transmembrane transport	GO:0071805	Biological Process	81%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, NF-X1-type	IPR000967	-	-
Sma3	Single-stranded nucleic acid binding R3H	IPR001374	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018519	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8F8

Fln msg: your sequence is longer than subject: 620 - 250

Fln protein: MHGYWRWGPDSRHFCFSAVSGLELSMSHHEYAVVPIACLILVGLFALQHYGTHRVGFMFAPIVLTWLLCISAIGLYNIIRWNPHVYQALSPYYMYNFLKKTQRGGWMSLGGILLCITGSEAMFADLGHFSQLSIKIAFTSLVYPALILAYMGQAAYISTHHDFTGAYQIGFYVSVPEHLRWPVLAIAILASVVGSQAVITGTFSIIKQSLALGCFPRVKVVHTSDKIYGQIYIPEINWILMSLCLAVTIGFRDTKHMGNASGLAVITVMLVTTCLMSLVIILCWHKNALLAFLFILCFGSIEALYFSASLIKFLEGAWVPLVLAFIFMFVMYVWHYGTIKKYEFDLQNKVSMKWLLGLGPSLGIVRVPGIGLIHTELVTGVPAIFTHFVTNLPAFHQVLVFVCIKSVPVPYVRPEERYLIGRIGPKEYRLYRCIVRYGYRDAHIDDHEFENQLVFSIGEFIRSERQNLSPNVDSSQDGRMTVIGTPRREDMISDETDECMQSASASNPRSPIIQSIHDIIEVNSPKLVRRKKVRFLLPNSPEMDRTVRDELQELSDAKEAGTAFIIGHSYVKAKRGSSFLRKFVINVAYEFLRKNCRGPSAALNIPHISLLEVGMVYQV*

Protein Length: 621

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATAGTTTTGTGTAATCGAAATCCTTCTTCTGTGTTATCACTTATCAATGCCAATCTCTTCATGGCCACAGGCACTCTCACAGCATGATACGGTACTCTGTGTCCCACCTTGCAGTGCTGGTTTTTGCGTTGAGGTGAGACAGAAGATGATTACCTATGGAGAATAGGAATATACCTCTATGTACTAACAAGATTGACTGGTACTACCCTCAAATGGATCTTGAAGTAGGGGCCTATGCCCATGTTGCACAGAAAGAATCTTGGAAGACTATTTTGACTTTGGCTTATCAAAGCCTTGGAGTAGTCTATGGAGATTTGAGTATATCTCCACTTTATGTTTACAGAAACACTTTTGCCGGAGATATTGAGCACTCTGATACCAACGAGGAGATATATGGAGTATTGTCCTTTGTCTTCTGGACTCTAACCTTGATACCACTGTTTAAGTATGTTTTTATAGTTCTAAAAGCTGATGACAATGGAGAAGGTGGAACTTTTGCATTGTATTCTCTATTATGCAGGCATGCCAAAATTAGCCTTTTGCCAAATTGCCAAGTGGCTGATGAGGAGCTTTCAACATACAACATTGATGATTTCCCTCAGACAAAGACTGGGTCAAGGGTGAAAAGTGTGCTTGAAAAATGTAGATTTTTTCACACTATGTTGCTTATTGTTGCTCTAATTGGCAC_-_ATGCATGGTTATTGGAGATGGGGTCCTGACTCCCGCCATTTCTGTTTTTCTGCAGTGTCAGGCCTCGAACTCTCAATGTCACACCATGAATATGCGGTGGTTCCTATTGCATGTCTTATACTGGTAGGCCTATTTGCACTACAACACTATGGCACACATCGGGTGGGATTCATGTTTGCACCAATTGTTTTGACTTGGCTACTATGCATCAGTGCGATTGGCCTCTATAATATTATTCGCTGGAATCCACATGTATATCAAGCACTCTCTCCATATTACATGTACAACTTTTTGAAGAAGACACAAAGAGGGGGTTGGATGTCCTTGGGAGGCATTCTATTGTGCATCACAGGTTCAGAGGCAATGTTTGCAGATCTCGGGCACTTCTCGCAATTATCAATCAAGATTGCTTTTACTTCCCTAGTCTACCCTGCACTAATTTTGGCATACATGGGCCAAGCTGCATATATCTCAACACATCATGACTTCACTGGTGCTTATCAAATTGGCTTTTACGTATCTGTACCTGAACATCTAAGATGGCCAGTACTGGCAATTGCAATACTTGCATCTGTGGTTGGAAGCCAAGCAGTCATCACTGGGACATTTTCAATCATTAAACAATCCTTGGCATTAGGCTGCTTTCCAAGAGTGAAAGTGGTGCACACATCTGATAAAATATATGGGCAGATATACATTCCAGAAATCAACTGGATATTAATGAGCCTCTGTCTTGCTGTTACGATTGGTTTTAGGGACACTAAACACATGGGAAATGCTTCCGGTTTGGCTGTCATCACTGTTATGTTGGTCACAACATGTCTCATGTCACTAGTAATTATTTTGTGCTGGCACAAAAATGCCTTGCTAGCTTTTCTCTTTATCCTCTGCTTCGGATCAATTGAGGCCCTCTACTTTTCAGCTTCTCTCATTAAATTTCTGGAAGGAGCCTGGGTACCTTTAGTTCTTGCATTCATATTCATGTTTGTAATGTATGTATGGCACTATGGAACAATTAAGAAATATGAGTTTGACTTGCAAAATAAGGTCTCCATGAAGTGGCTGCTTGGTCTTGGACCAAGTCTGGGGATTGTGCGTGTTCCTGGTATTGGACTTATACATACAGAGCTGGTCACAGGAGTACCTGCAATTTTTACGCATTTTGTAACCAATCTTCCAGCATTCCATCAGGTGCTTGTCTTTGTGTGTATCAAATCAGTGCCAGTACCTTATGTCCGGCCAGAGGAACGATATCTTATAGGGCGTATTGGGCCTAAGGAGTACAGGCTATATAGATGCATTGTTAGGTACGGATATCGTGATGCCCACATAGATGACCATGAATTTGAGAATCAGCTTGTTTTCAGCATTGGAGAGTTTATTCGTTCAGAGAGGCAAAATTTGTCCCCAAATGTGGATTCTTCTCAAGATGGGAGAATGACTGTAATAGGAACTCCAAGGAGAGAAGATATGATAAGTGATGAAACAGACGAGTGTATGCAATCTGCTTCTGCATCAAATCCTAGGTCCCCAATTATTCAAAGCATCCATGATATTATAGAGGTAAACTCTCCTAAACTTGTAAGGAGAAAGAAAGTGAGATTTTTGTTGCCCAATAGCCCTGAAATGGATCGCACTGTAAGAGATGAGCTGCAAGAACTTTCAGACGCTAAGGAAGCTGGAACTGCCTTTATAATAGGCCACTCCTATGTGAAAGCAAAAAGAGGCTCTTCTTTTCTTAGGAAGTTCGTTATCAATGTGGCGTATGAGTTTCTCAGAAAGAACTGCAGGGGACCATCGGCTGCTTTGAATATACCTCATATTTCACTTTTAGAGGTCGGCATGGTTTATCAAGTTTAA___GTCATAGTGTTTGTAACCTAATATATATTTGCTCTGGCTTATGTTACCTTACTAACACTTGTATTAATACTTTTTGGGCTGAACTCCTTGTAAGCCATGAGAAATAGACTGTAATAAAATGCACAACCATGAATAATTTCCTGGAATACGTCATTTGGAAATACACCCAGAAATGCTGCATTCAGTGCTCTTTAGGTACAAAGAGCTTAGAGAACTTGTATAATTATTCATGATTAAACTCATTTCTGAATTGTGTACTGAATTCATTTGAAAAAAA

Fln Alignment:

Contig2585___IHTELVTGVPAIFTHFVTNLPAFHQVLVFVCIKSVPVPYVRPEERYLIGRIGPKEYRLYRCIVRYGYRDAHIDDHEFENQLVFSIGEFIRSERQNLSPNVDSSQDGRMTVIGTP--RREDMISDET-DECMQSASASNPRSPIIQSIHDIIEVNSPKLVRRKKVRFLLPNSPEMDRTVRDELQELSDAKEAGTAFIIGHSYVKAKRGSSFLRKFVINVAYEFLRKNCRGPSAALNIPHISLLE
D5A8F8______________MYTELVTGIPANFTHFVTNLPAFHQVLIFICIKSVPVPYVPPEERFLIGRVGPKEYRLYRCIVRYGYRDVHGDTDHFEDQLILNLGEFIRSEAKHSCSSDSYSADGRMAVIGTPVHGMESILSYETAEESIQSVNLSYLGSQTIQSIQDLIETDSPHLARRKKVRFLLPSSPDIDPDVKDELQELFQAREAGIAFILGHSYVKAKNDSSFLKKLAINAGYNFLRKNCRGPSVALRIPHISLLE

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
2788		16	83		0.994512
2790			83	16	0.994512
2791	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain