SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2572

Length: 953 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene2572 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	endoribonuclease/protein kinase IRE1-like protein [Arabidopsis thaliana] gb\|AAK15470.1\|AF308596_1 endoribonuclease/protein kinase IRE1-like protein [Arabidopsis thaliana] dbj\|BAB63367.1\| Ire1 homolog-2 [Arabidopsis thaliana] gb\|AAD32909.2\| putative protei	-	-	1.0e-29	70%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	76%
Blast2go	endoribonuclease protein kinase ire1	-	-	8.54202e-37	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	8.54202e-37	86%
Blast2go	Hydrolases, Acting on ester bonds, Endoribonucleases producing 5'-phosphomonoesters.	EC:3.1.26.-	-	8.54202e-37	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	activation of signaling protein activity involved in unfolded protein response	GO:0006987	Biological Process	8.54202e-37	86%
Blast2go	RNA splicing, via endonucleolytic cleavage and ligation	GO:0000394	Biological Process	8.54202e-37	86%
Blast2go	mRNA processing	GO:0006397	Biological Process	8.54202e-37	86%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	8.54202e-37	86%
Blast2go	endoribonuclease activity, producing 5'-phosphomonoesters	GO:0016891	Molecular Function	8.54202e-37	86%
Blast2go	ATP binding	GO:0005524	Molecular Function	8.54202e-37	86%
Blast2go	extrinsic to endoplasmic reticulum membrane	GO:0042406	Cellular Component	8.54202e-37	86%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Pyrrolo-quinoline quinone repeat	IPR002372	-	-
Sma3	PUG domain	IPR006567	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	KEN domain, ribonuclease activator	IPR010513	-	-
Sma3	Quinonprotein alcohol dehydrogenase-like	IPR011047	-	-
Sma3		IPR017442	-	-
Sma3	Pyrrolo-quinoline quinone beta-propeller repeat	IPR018391	-	-

Full-Lengther Next Prediction

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
549		86		13	0.999981
550		60		40	1.0
554	13			86	0.999981
555	13			86	0.999981
556	86		13		0.999981
557			13	86	0.999981
559		13		86	0.999981
562		86	13		0.999981
563	13			86	0.999981
564		13		86	0.999981
565		86	13		0.999981
574		50		50	1.0
575	41		58		1.0
603	16		83		0.999991
769		12		87	0.992554
770	87	12			0.992554
771	87	12			0.992554
773	87			12	0.992554
776		12	87		0.992554
800	90		10		0.90298
801	10	90			0.90298
804	90		10		0.90298
805		10	90		0.90298
809			10	90	0.90298
812	10	90			0.90298
813		10		90	0.90298
815			40	50	1.0
818	90		10		0.90298
896		33		66	1.0
901	16		83		0.994512
902	83			16	0.994512
915	33			66	0.997452
916		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain