SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2558

Length: 1352 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2558

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein [Arabidopsis thaliana] gb\|AAK49620.1\|AF372904_1 AT4g08790/T32A17_100 [Arabidopsis thaliana] gb\|AAM91374.1\| At4g08790/T32A17_100 [Arabidopsis thaliana] gb\|AEE82678.1\| Nitrilase	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	82%
Blast2go	nitrilase homolog 1-like	-	-	71%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nitrilase.	EC:3.5.5.1	-	0.0	71%

Source	KEGGs	Term	Identity
Blast2go	Tryptophan metabolism	00380	71%
Blast2go	Cyanoamino acid metabolism	00460	71%
Blast2go	Aminobenzoate degradation	00627	71%
Blast2go	Styrene degradation	00643	71%
Blast2go	Nitrogen metabolism	00910	71%
Blast2go	Metabolic pathways	01100	71%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	71%
Blast2go	nitrogen compound metabolic process	GO:0006807	Biological Process	71%
Blast2go	nitrilase activity	GO:0000257	Molecular Function	71%
Blast2go	plastid	GO:0009536	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nitrilase/cyanide hydratase	IPR003010	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NR10

Fln msg: your sequence is shorter than subject: 301 - 328

Fln protein: MVGMALSTFPGIVGGASLRGGSTSVYRHLQCTTLCTAEFSMAGRVKVGAAQMTSTDDLNVNFQTCSRLVQEAAAGGVKFLSLPENFSFFGSKSVESLSIADTLDGPIMQRYCSLARESRIWLSLGGFQEKGPDEKHICNTHVLLDDLGNIRSSYRKIHLFDVDVPGGPVLKESNITTPGSQLVVADSPVGRLGLTVCYDLRFPELYQQLRFQHNAQVLLVP*AGKHNEKRESYGDAIIIDPWGTVVARCSDRLSTGIAVAEIDPAFLDSVRIRMPISEHRRPDIYGKSSSSTTPETITFL*

Protein Length: 302

Fln nts: CGTGGTGACG_-_ATGGTTGGAATGGCATTATCGACATTCCCTGGCATTGTAGGAGGTGCGAGCCTGCGAGGTGGATCGACAAGTGTGTATAGACATCTTCAGTGCACTACTCTCTGCACTGCTGAATTCTCCATGGCGGGACGAGTGAAAGTAGGAGCTGCCCAGATGACTTCTACGGACGATCTCAATGTCAATTTTCAGACCTGTTCTCGACTGGTGCAGGAGGCAGCAGCAGGAGGAGTAAAGTTTCTCAGCTTGCCGGAGAACTTCTCTTTTTTCGGTTCTAAGAGTGTGGAGAGTCTCAGCATAGCAGATACCTTGGATGGGCCTATCATGCAACGCTACTGTTCTCTTGCAAGAGAATCTAGGATATGGCTATCACTGGGGGGTTTCCAAGAGAAAGGCCCAGATGAAAAGCATATTTGTAACACACATGTATTGCTAGATGACCTGGGTAACATTCGGAGTAGCTATCGCAAAATTCATTTGTTTGATGTTGATGTTCCTGGTGGTCCAGTTCTTAAAGAAAGCAACATTACAACACCTGGTTCACAGCTAGTTGTTGCAGACAGCCCAGTTGGTCGACTTGGCCTAACTGTTTGCTATGACTTGCGGTTTCCTGAACTTTATCAACAGCTGCGCTTCCAACACAATGCGCAGGTATTGTTAGTTCCTTAAGCTGGAAAGCATAATGAGAAAAGAGAAAGTTATGGTGATGCTATAATTATTGACCCATGGGGAACTGTTGTTGCTCGTTGCTCAGATCGTTTATCAACAGGTATAGCGGTCGCTGAGATTGATCCAGCTTTTTTAGATTCTGTGAGGATACGCATGCCCATTTCTGAGCATCGTAGACCAGACATTTATGGCAAAAGCTCATCGTCGACGACTCCAGAAACCATCACCTTCCTATAG___ACATATTTTGGATTTAAATCTTTACTAACGGCTATTCAAGGTTGGAATTGATTGATGTTGTTCAAGTCATCACTCGGCGTGGGGTTTAGAATTCTTAGTTTGGGAAAAATAGGCTGGAATTGATTAATGTTGTTCATGGTTTGGGAAAAATAGTGATTATTTCGTGCGATTTAATTCAGTTTATGAATGATTATGGATAGAAGTACTGAAATTAATATCAAACATTTGAAAATCAGCTTTTAAAATGACCAGTTATTATGTACCTATCTGCTAAAATGACTTTATTGGAGAACTTAGTTATGATGCATGTACACATGTCAGCATGACATTTTAAGAATTTGATTTGACAAACGAAAGACTCAAAGAGGACCTTGATTATGTACATGGTGTCACAAAATGACATGATGAAGCCTACAATCAAAATTTCACTGTTCAATAG

Fln Alignment:

Contig2558___MALSTFPGIVGGASLRGGSTSVYRHLQCTTLCTAEFSMAGRVKVGAAQMTSTDDLNVNFQTCSRLVQEAAAGGVKFLSLPENFSFFGSKSVESLSIADTLDGPIMQRYCSLARESRIWLSLGGFQEKGPDEKHICNTHVLLDDLGNIRSSYRKIHLFDVDVPGGPVLKESNITTPGSQLVVADSPVGRLGLTVCYDLRFPELYQQLRFQHNAQVLLVP*A-------------------------------GKHNEKRESYGDAIIIDPWGTVVARCSDRLSTGIAVAEIDPAFLDSVRIRMPISEHRRPDIYGKSSSSTTPETITFL
A9NR10______________MALSTFTGIAGGVSLRGGSRSVHRHIQCTTLCTTEFSMAGRVKVGAAQMTSTNDLNANFQTCSRLVQEAAAGGVKFLSLPENFSFFSSKDGESLSIADTLDGPIMQRYCSLARESRIWLSLGGFQEKGPDEKHLCNTHVLLDDLGNIRSSYRKIHLFDVDVPGGPVLKESNSTTPGSQLVVADSPVGRLGLTVCYDLRFPELYQQLRFQHNAEVLLIPSAFTKVTGQAHWEILLRARAIETQCYVIAATQAGKHNEKRESYGDAMIIDPWGTIVARCPDRLSTGIAVAEIDPAFLDSMRMRMPISEHRRPDIYGKSSLSVTAETISSL

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
22		12		87	0.992554
23			87	12	0.992554
24		12	87		0.992554
25	9	45	9		1.0
26	54		9		1.0
27			36	63	1.0
28		9	36	54	1.0
47	45		9	45	1.0
144	50		50		1.0
407	75		25		0.996473
412	75		25		0.996473
416	25		75		0.996473
479	75		25		0.996473
495	14		85		0.993533
496	14			85	0.993533
499	85			14	0.993533
500		14		85	0.993533
501	14		85		0.993533
510	16		83		0.994512
511			83	16	0.994512
530		80		20	0.995493
531	80		20		0.995493
535	20			80	0.995493
590		75	25		0.996473
611	25		75		0.996473
656	33		66		0.997452
667		33		66	0.997452
671		33		66	0.997452
673		66	33		0.997452
675			33	66	0.997452
676		33		66	0.997452
677	50	50			1.0
679			75	25	0.996473
680		75	25		0.996473
881		78		21	1.0
928		10		90	0.90298
1025		50		50	1.0
1053	12		87		0.992554
1054		12	87		0.992554
1055	12			87	0.992554
1065	83	16			0.994512
1081	14		85		0.993533
1082		85		14	0.993533
1107		16		83	0.994512
1111			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain