SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2544

Length: 1783 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene2544 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Protein spotted leaf 11; AltName: Full=Cell death-related protein SPL11 sp\|Q0IMG9.2\|SL11_ORYSJ RecName: Full=E3 ubiquitin-protein ligase SPL11; AltName: Full=Cell death-related protein SPL11; AltName: Full=Protein spotted leaf 11 gb\|AAT94160	-	-	1.99965e-42	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	ubiquitin-protein pub12	-	-	0.0	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 113 aas, putative chimeric sequence, your sequence is shorter than subject: 197 - 497

Fln protein: KRPAAGRRGSPPSGHATLQKLKQTLETLVKNLGNRSASNQSVRRDAVREIKALAKENRETRLRIVEAGAVAKILPLLSCGDSQTEENAMAALFYLSLDDDNKVGLVAEGAVDSIVNVLKHGSMENRSTAAVTLTSLAMVDVNKATIGGHSDAIRALVKLLAEGDSRARKEAITALYSLCFYDDIKKELSWRGQYLC*

Protein Length: 198

Fln nts: TGAAGCGCCCCGCGGCGGGCCGGCGTGGCTCCCCGCCATCCGGCCATGCGACCCTGCAGAAACTCAAACAAACCCTAGAAACCCTAGTAAAAAACCTAGGGAATAGGAGTGCTTCTAATCAGTCTGTGAGGAGGGATGCCGTGAGGGAGATTAAGGCGCTGGCGAAGGAAAATCGCGAGACGCGTCTGCGTATTGTGGAAGCTGGGGCCGTGGCGAAGATTTTGCCTCTCTTGTCCTGTGGGGACTCTCAGACCGAAGAAAATGCCATGGCAGCGCTCTTCTACTTAAGCTTGGATGATGATAATAAAGTGGGGCTTGTGGCAGAAGGGGCTGTGGATTCGATCGTCAATGTGTTGAAGCACGGTTCCATGGAGAATCGATCCACGGCGGCCGTGACCTTGACGAGCTTGGCGATGGTGGATGTGAATAAAGCCACAATTGGGGGCCATTCGGATGCTATACGGGCCCTCGTTAAGCTACTTGCAGAAGGGGATTCGAGAGCTCGCAAGGAAGCCATTACGGCTCTCTATAGTCTCTGTTTCTATGATGATATAAAAAAAGAGCTGTCATGGCGGGGACAGTACCTTTGTTAG___TTGGGGGTTTGATTAACAGCGCAGGAGTCCCTGATGATACCCTTGAGAGGCCCCTCGGTGTTCTCAACATGTTGGCGACTGTAGTGGAAGGGAGAACGGCGATAGGTAACCATTGGGGTATCATGGGGACCCTGGTTAGGTTGCTTAAACAGGGGACTTCCAGAAGTAGAGAGCACGCTGTGGCTATCTTGTCCTCGCTATGTTGCAATAGCAAGCAGAGGGCCACGGAGGCTCGTGAGGCCGGGGCGCTGGAGCATTGCAGGCAGCTTCTCGACGACGGGACGATGAGAAGCAAGCGCAAGGCTTCAGCTCTGATGAAGGCTTTGGAGGACTATTCGGCACCGGAAGATTGTAGTTTTATTAAGACATGGTTTGGGGGTATGAAAGATGTGAATTTGAGGTTTTCAACCGATTCCACAAATCAATAAAGAACGTATATGAGATAACCATCTTCTTCGGCCATCATCTTCTTCAGCCAAAGATGAGTATGCATCAACTCACTCACTCTTATGATGGAAGAAGTCTGGTTTCTCAAACAGATTTTCATAAGTGTATGTATTGAATTTGTTGCAAAAATGGCTGTATGTATTGAATTTGTTGCAAAAATGGCTGTTGTAGCCACCTCTCGCGCTGAAGGAATTTTTGTCATAGCAGAATGTATAGATTTAGGTGCTGAACAATTTGCTCTCGAAAATGCTCCAAGAATGGCCTGTGATTTCCACTGTGCATATAGATTTGTCAAGTGCGTGTTTCATAGTCGTCTTGCAGCAGCAGGATTAGATTCATGCTGGATCTTGTCCATTGTAATATTTTAGTGAATCAGGTGTGCCACTAGGAGTGGCTTGTTCGACAAGGCTTTGCAATTGATGCATTTGTAGAAGAATTTCAGTGGTGTTTAGTATCTAAAAGTTGGAAATTAGTAGTTCGTAGTGTACAAATATCGAATCTAGCAATGCATAATAATTTTGAACATTGAAAATTATAATTTGAAGTCCATGTTTGGCTAGAGAACAATATCATTAAACAAACAATGAATCTTGCAATATATGTGTAGATTTCTTTGTATGCATTTGGATAGACTCGGCAATAAATCTCAGCTAATGCTAATCTCGAGGACTTCAGCAGTGTTCTGAGTTTTTTATTTATGACAGATATCTGGGGCTGGTTTTCTCTTAGACGTGTAGTTTATT

Fln Alignment:

Contig2544___VRRDAVREIKALAKENRETRLRIVEAGAVAKILPLLSCGDSQTEENAMAALFYLSLDDDNKVGLVAEGAVDSIVNVLKHGSMENRSTAAVTLTSLAMVDVNKATIGGHSDAIRALVKLLAEGDSRARKEAITALYSLCFYDDIK
C0PSB5______________VQRAAAEEIRLLAKRNADNRLLIAEAGAIPQLVKLLSSTDMKTQEHAVTALLNLSIHSSNKGFIVQAGAINRIIDVLKHGSTEARENAAATLFSLSVVDENKVIIGA-SGAIPPLVDLLRDGTVRGKKDAATAIFNLSIYQGNK

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
589			25	75	0.996473
590			75	25	0.996473
687		10		90	0.90298
695		10		90	0.90298
696		10		90	0.90298
697	10		90		0.90298
699			10	90	0.90298
700			90	10	0.90298
701		90	10		0.90298
704	90			10	0.90298
705		90	10		0.90298
709			11	88	0.923564
711		11		88	0.923564
712	11			88	0.923564
713	11			88	0.923564
718		11	88		0.923564
720	88	11			0.923564
723	77	11			0.968132
808		75		25	0.996473
813	25	75			0.996473
814		75	25		0.996473
819	75		25		0.996473
820		75	25		0.996473
823		25		75	0.996473
825	25			75	0.996473
827			25	75	0.996473
828			33	66	0.997452
830	66		33		0.997452
832	66		33		0.997452
834	66	33			0.997452
1179	11			88	0.923564
1182	88			11	0.923564
1183	88			11	0.923564
1186	14	85			0.993533
1191		85		14	0.993533
1197	83			16	0.994512
1198	83			16	0.994512
1676		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain