SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2499

Length: 1947 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene2499
CGTCGTGACCTTGGCTGTCACTCAATTTCTACTTGCTCTCAGGTTTGTCAATTGCAATCATGCCGCCAGCTGCAGATATACTTTCAACCCTTCCAGAGCCATTGCTTGGTCTCATCCTTTCTAAAATTCCAATCAGAGAAGCCGTCGGGTGTTCCGTTCTGTCGAAGAGATGGCGATTCCTCTACACCCAAATTCCCCAACTCACTCTCTCTCCCATTCTTCTTCTGCCCAATATTAACCCAGATCCAGATCCACTCTCTGTTGCAAGGGTGGAAAAAATAATCTCCAACCTCCTCCTGTTGCATTCGCCAGATATTGAGGCTTTTCATTTGTTCCAAAACACTACAAATAATGACTGTCTAAATAATGACTGTCTGCAGTTTACTAGGGAAAGCGTATGGCAATGGGTGAGATACGCCGCCTGTAGGAATGTCCAACACCTGACTCTCTGGATTTTCCCTGATGATAGTGACTATTTCCATTATCCTGAAGATTCCTATGATTACCGTGCCGATAGGCAAATCCCGCCTGCCTTTTTTTCATGCACTCGTCTCATTACTCTCAAGCTTTCGAACTACAACCTTACGCATCTTCCGTCCCATTTCTCTGGATTCAACCATCTCATTACATGCTCCTTCACAGAGATGGAGTTCACAGATGATTCTCTCGCCGGCTTTATCTCTCATACCCCGTTCCTTGAGAATCTTAGCTTATTACACTACGTTGGCCTAAGGAAGCCTGTTATCTCCGCTCCCAATCTTACACATTTAACTATGTATACCGAAGCCTTTTGTGTGGATGTGGAGGTTTTAACGTTAAACTGTCCGAAGCTTACAACTCTGGATATGGAGGCGGAGATGATACGTCGTCTGAGAATAAATGGAGTGTTGTTTCACGAACTTTCATATATAGTCTCTAACATTGAAATGCAGTGTGGGAGCAATGTTGCTGAATTGTGGTTGGATTTTGGTTATGCGGCGACACTTCAAGTTTCAGTAGAGAGAGTTCTTGAGATAGTGGGGGATTTCAAAACATTGAAGAAGCTCGAAATCACTGGCGGGTCGGGACGCCAAAACCAGATGGTTGTTCTCGTTGATAATCTGCTCGAGAGGCTTCCTGGACTAGTGCAACTACTTGTGAGCAGCATGTTTTGTCTGGAGCTAGTAAGAGATCCCACGCTACCATGTGTAATCTCTCTACTAGGTAATCTTCGTAAAGTGAAGGTAAGTATATACAATTTTGATAAAAGGGAAATAAGTATATTGGATAAGTTGCTGAAGAGAGCTTCTGCTCTTGAAATAATGGAAGTGGAATTACCATCATGTTTATGCAATCGACAATCCGCGGTGGGGAGAGCTTCTTCTGTAAAGAAGAAAGCAAATGCCTTTTTGACAAAGCTATTGTATCTGAGTGGAAGTGCTTCCACTCAAGCAAGAATATGTGTGAGCTTTGGAGAGTGGAAAAGCTTCCTGTCAAGCAAGAATAAGTGTGAGATTTTAGTATCTGAATGAAAATATGTGACATACAGAAACTCCAAAAGGCTGTCTGCCATCCTATAATTTATGTTGTAAGTACTGCTCGCCTTGTTGCCATCGCTAAGGATCCTACTAATTGTCTATAGCGGTAAAACATATCTAGGTAATCCACATCTCTTTTTGGTTACGTCTGAAGATGGAATATATATTAGCAGATCAATCTCTGTTCGGTTGATGTAACGTTGGATGCATTACTGTATGAATGTCTGGATGTTTTCCCCTTCAATCTGGACTTTTGGAAAATCTTTGTCCATTGCAAACAGATAGCATAGTGTTATCAACTATATGGGTTATAGCATAGTGTTATCAACTATAATGTAAGATTTTTGACTGACATTATGTTTTCCCGGGTCAGTTTCTCCTCGAAGAAAAGCCTTACTGATTCGAAAAAGCAATATAACCTCCTCCACAA

Ace file of the UniGene sp_v2.0_unigene2499 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cyclin-like F-box; FBD n=1 Tax=Medicago truncatula RepID=Q2HRF2_MEDTR	-	-	2.0e-11	21%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	f-box fbd lrr-repeat protein	-	-	5.67154e-37	43%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8V8

Fln msg: your sequence is longer than subject: 484 - 261

Fln protein: MPPAADILSTLPEPLLGLILSKIPIREAVGCSVLSKRWRFLYTQIPQLTLSPILLLPNINPDPDPLSVARVEKIISNLLLLHSPDIEAFHLFQNTTNNDCLNNDCLQFTRESVWQWVRYAACRNVQHLTLWIFPDDSDYFHYPEDSYDYRADRQIPPAFFSCTRLITLKLSNYNLTHLPSHFSGFNHLITCSFTEMEFTDDSLAGFISHTPFLENLSLLHYVGLRKPVISAPNLTHLTMYTEAFCVDVEVLTLNCPKLTTLDMEAEMIRRLRINGVLFHELSYIVSNIEMQCGSNVAELWLDFGYAATLQVSVERVLEIVGDFKTLKKLEITGGSGRQNQMVVLVDNLLERLPGLVQLLVSSMFCLELVRDPTLPCVISLLGNLRKVKVSIYNFDKREISILDKLLKRASALEIMEVELPSCLCNRQSAVGRASSVKKKANAFLTKLLYLSGSASTQARICVSFGEWKSFLSSKNKCEILVSE*

Protein Length: 485

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCTACTTGCTCTCAGGTTTGTCAATTGCAATC_-_ATGCCGCCAGCTGCAGATATACTTTCAACCCTTCCAGAGCCATTGCTTGGTCTCATCCTTTCTAAAATTCCAATCAGAGAAGCCGTCGGGTGTTCCGTTCTGTCGAAGAGATGGCGATTCCTCTACACCCAAATTCCCCAACTCACTCTCTCTCCCATTCTTCTTCTGCCCAATATTAACCCAGATCCAGATCCACTCTCTGTTGCAAGGGTGGAAAAAATAATCTCCAACCTCCTCCTGTTGCATTCGCCAGATATTGAGGCTTTTCATTTGTTCCAAAACACTACAAATAATGACTGTCTAAATAATGACTGTCTGCAGTTTACTAGGGAAAGCGTATGGCAATGGGTGAGATACGCCGCCTGTAGGAATGTCCAACACCTGACTCTCTGGATTTTCCCTGATGATAGTGACTATTTCCATTATCCTGAAGATTCCTATGATTACCGTGCCGATAGGCAAATCCCGCCTGCCTTTTTTTCATGCACTCGTCTCATTACTCTCAAGCTTTCGAACTACAACCTTACGCATCTTCCGTCCCATTTCTCTGGATTCAACCATCTCATTACATGCTCCTTCACAGAGATGGAGTTCACAGATGATTCTCTCGCCGGCTTTATCTCTCATACCCCGTTCCTTGAGAATCTTAGCTTATTACACTACGTTGGCCTAAGGAAGCCTGTTATCTCCGCTCCCAATCTTACACATTTAACTATGTATACCGAAGCCTTTTGTGTGGATGTGGAGGTTTTAACGTTAAACTGTCCGAAGCTTACAACTCTGGATATGGAGGCGGAGATGATACGTCGTCTGAGAATAAATGGAGTGTTGTTTCACGAACTTTCATATATAGTCTCTAACATTGAAATGCAGTGTGGGAGCAATGTTGCTGAATTGTGGTTGGATTTTGGTTATGCGGCGACACTTCAAGTTTCAGTAGAGAGAGTTCTTGAGATAGTGGGGGATTTCAAAACATTGAAGAAGCTCGAAATCACTGGCGGGTCGGGACGCCAAAACCAGATGGTTGTTCTCGTTGATAATCTGCTCGAGAGGCTTCCTGGACTAGTGCAACTACTTGTGAGCAGCATGTTTTGTCTGGAGCTAGTAAGAGATCCCACGCTACCATGTGTAATCTCTCTACTAGGTAATCTTCGTAAAGTGAAGGTAAGTATATACAATTTTGATAAAAGGGAAATAAGTATATTGGATAAGTTGCTGAAGAGAGCTTCTGCTCTTGAAATAATGGAAGTGGAATTACCATCATGTTTATGCAATCGACAATCCGCGGTGGGGAGAGCTTCTTCTGTAAAGAAGAAAGCAAATGCCTTTTTGACAAAGCTATTGTATCTGAGTGGAAGTGCTTCCACTCAAGCAAGAATATGTGTGAGCTTTGGAGAGTGGAAAAGCTTCCTGTCAAGCAAGAATAAGTGTGAGATTTTAGTATCTGAATGA___AAATATGTGACATACAGAAACTCCAAAAGGCTGTCTGCCATCCTATAATTTATGTTGTAAGTACTGCTCGCCTTGTTGCCATCGCTAAGGATCCTACTAATTGTCTATAGCGGTAAAACATATCTAGGTAATCCACATCTCTTTTTGGTTACGTCTGAAGATGGAATATATATTAGCAGATCAATCTCTGTTCGGTTGATGTAACGTTGGATGCATTACTGTATGAATGTCTGGATGTTTTCCCCTTCAATCTGGACTTTTGGAAAATCTTTGTCCATTGCAAACAGATAGCATAGTGTTATCAACTATATGGGTTATAGCATAGTGTTATCAACTATAATGTAAGATTTTTGACTGACATTATGTTTTCCCGGGTCAGTTTCTCCTCGAAGAAAAGCCTTACTGATTCGAAAAAGCAATATAACCTCCTCCACAA

Fln Alignment:

Contig2499___DDSLAGFISHTPFLENLSLLHYVGLRKPVISAPNLTHLTMYTEAFCVDVEVLTLNCPKLTTLDMEAEMIRRLRINGVLFHELSYIVSNIEMQCGSNVAELWLDFGYA-ATLQVSVERVLEIVGDFKTLKKL--EITGGSGRQNQ-MVVLVDNLLERLPGLVQLLVSSMFCLELVRDPTLPCVISLLGNLRKVKVSIYNFD-----KREISILDKLLKRASALEIMEVELPSCLCNRQSAVGRASSVKKKANAFLTKLLYLSGSASTQARI
D5A8V8______________DDYLACLISHCPLLQKLTIIKCNGLQKPDVSALNLTYLEVEAD----EMEVLMLNCPKLISLNAVSCPISDLSVNGVLFYEFSFMVRVLKLQCGNDVTELWLDSSVVDSEGNLSAERLFEMVWAFKSLKKLSMDIYELLEREREGMSVPFVKLLERLPHLERLEMRGRFFRELTGDEIPPCLSSPLVNLRIIQVHIDDSDSMEINERQIAMLGCLLQSTPSLEILKFQLLSDL-----------YVTAQHTGVVEKILRLRGT-STQARI

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
1303	88	11			0.999952
1406	90		10		0.90298
1420			88	11	0.923564
1422	11	88			0.923564
1424			88	11	0.923564
1428		11		88	0.923564
1429	10			90	0.90298
1435	10			90	0.90298
1436		90	10		0.90298
1438			90	10	0.90298
1443	10		90		0.90298
1444		10		90	0.90298
1445	90		10		0.90298
1472	88	11			0.923564
1475	88			11	0.923564
1536		10		90	0.90298
1537	10	90			0.90298
1539		90		10	0.90298
1572	11	88			0.923564
1573	88		11		0.923564
1579		11		88	0.923564
1582	11			88	0.923564
1583			11	88	0.923564
1584	88		11		0.923564
1586		11		88	0.923564
1587	11			88	0.923564
1588	77	11			0.968132
1590	88	11			0.923564
1592	77	11			0.968132
1593	11		88		0.923564
1912	88			11	1.0
1914	12	88			1.0
1915	88	12			1.0
1919	83	16			1.0
1920		16	83		1.0
1921	21	4			1.0
1922	30	4			1.0
1925	82		13	4	1.0
1926		4	17	65	1.0
1928		13	86		1.0
1931		13		86	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain