SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2472

Length: 1447 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene2472 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Phototropic-responsive NPH3 family protein [Arabidopsis thaliana] sp\|Q9LUB9.1\|Y5813_ARATH RecName: Full=BTB/POZ domain-containing protein At5g48130 dbj\|BAA96993.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED95622.1\| Phototropic-responsive NPH3 f	-	-	6.0e-33	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%
Blast2go	phototropic-responsive nph3 family protein	-	-	3.79752e-43	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to stimulus	GO:0050896	Biological Process	3.79752e-43	60%

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	NPH3	IPR004249	-	-
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3		IPR012287	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-
Sma3		IPR014778	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPD8

Fln msg: your sequence is shorter than subject: 308 - 648

Fln protein: NLWDIYLARIAKDARLNPGKFAELAGILPCSTRSSHNLLYKAIHTYLKAHPELSEEDRLAVCKVLDCRKLSQEVCVHAVQSELMPLRLIVQAMFVQQLQTHQSIRSNSESSQTARNDNIDSPSCLNDVSTLSSHFLSDDIRCRVTEDEDGLPLGLILKRDAAFRQAAYLKADYEATSFRLKNLEEELVAMKENLDRSREESGKTRHIFSRGKSESFRVVSNNKPVDIGCTRRLGHTFNGGTNWLSQRKNHGNFAKKLLKSLQLFGFRKAQTDQNNAAEDIDPCQQTEPSDVEVPQRNRFHRRNYSLS*

Protein Length: 309

Fln nts: CAAACCTCTGGGATATATATCTTGCTCGGATTGCTAAGGATGCGAGATTAAATCCTGGCAAATTTGCAGAACTTGCTGGGATTTTGCCTTGTTCTACTCGTTCTAGTCACAATTTATTATACAAAGCCATCCACACATATCTCAAAGCACATCCTGAACTATCAGAGGAAGATCGTCTTGCTGTCTGCAAAGTCTTAGACTGTCGAAAACTGTCACAAGAAGTCTGCGTTCATGCTGTTCAGAGTGAGTTGATGCCCCTCCGATTGATAGTGCAAGCCATGTTCGTGCAGCAATTGCAAACACACCAATCTATTAGGTCCAATTCTGAAAGTAGTCAAACTGCAAGGAATGATAACATCGATTCACCATCTTGTCTTAATGACGTATCAACCCTTTCATCCCATTTTCTGTCGGATGATATTAGATGCAGGGTTACCGAAGACGAAGATGGGTTGCCATTAGGACTTATTCTGAAAAGAGATGCAGCTTTTCGTCAAGCTGCTTATCTGAAGGCAGACTATGAAGCTACAAGTTTCAGATTGAAAAATTTAGAGGAAGAACTCGTTGCAATGAAAGAAAACCTTGACAGAAGCAGAGAGGAATCTGGCAAAACCAGGCATATTTTTTCCAGGGGAAAATCAGAGAGCTTCAGAGTAGTTAGCAATAATAAGCCAGTTGATATTGGATGCACCAGAAGGCTTGGACATACATTTAATGGTGGTACAAACTGGCTTTCTCAAAGGAAAAATCATGGAAATTTTGCCAAGAAATTACTAAAATCTTTACAGCTATTTGGTTTTCGAAAAGCGCAAACTGATCAAAATAATGCAGCAGAAGACATCGATCCATGTCAACAGACTGAACCTTCAGATGTGGAGGTTCCTCAAAGAAATCGTTTTCACCGTCGTAATTATTCACTCTCTTGA___AGTTCATTTGTAGACAGAACAGAACAGAGGTAGTTTTCTGATTCTTGTTCTATGTACATTTGTTAGAAGACATGGTTATATCTATCCAACCTGATTGAGCATAGCAAAGCGCTGTGATGTCTAGCCAAGTTCTTCATAAATTTCCAGGAAAACCTTTCAAATTGTCAGTCCTTTTTGTTTTGCTGGAGAATGAAAGCAGCTTGGTTTTAACATAGTACAACGACAAATTCTGAAGAGAAGAGACTTGAATTTGTCAAAAGCATATGAGCAAACTTTGGTGTTTACATTGCAGGCTTAAATCATGGGGAACTGCTATTGGCTGGTTTTGTATTTGAATACCTTGAAATAGCGACTTTGAACTCGTCTATGCAAATATCAGGTTTCTTTTTCCTAGATGGCACTGAGCTGGAAATTATATCATTAATTGATATAACTGCCTTGTGTTTCTGGATTACTTGATTAATAATGGCAATGTTTGAATTCTTCAAATGCCACCTTTGTGCAGAACGCTGGACATGACA

Fln Alignment:

Contig2472___LWDIYLARIAKDARLNPGKFAELAGILPCSTRSSHNLLYKAIHTYLKAHPELSEEDRLAVCKVLDCRKLSQEVCVHAVQSELMPLRLIVQAMFVQQLQTHQSIRSNSESSQTARNDNIDSPSCLNDVSTLSSHFLSDDIRCRVTEDEDGLPLGLILKRDAAFRQAAYLKADYEATSFRLKNLEEELVAMKENLDRSREESGKTRHIFSRGKSESFRVVSNNKPVDIGCTRRL
B8LPD8______________LVDGYLAEVAPDGNLKPAKFHSLADALPDYARLFDDGLYRAIDIYLKAHPWVTEEEREKICSIMDCQKLTLEACTHAAQNERLPLRVVVQVLFFEQLQLRNAI---AGAFLAADGTDPSRPSHINPATDLAMP--------GPAVGGDGW--------NNALQENHVLRIDMDTMRSRVHELERECSTMRHEIEKIDKPKG------ARGSSTGSGSAWNFMSKKFGCKFKL

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
554	10		90		0.90298
579		10		90	0.90298
580		10	90		0.90298
581	90	10			0.90298
583			90	10	0.90298
584		22	77		0.999999
597	88		11		0.923564
660		88		11	0.923564
684	12		87		0.992554
716			83	16	0.994512
717		83	16		0.994512
722			16	83	0.994512
723	16			83	0.994512
724		16	83		0.994512
725	16			83	0.994512
726	83		16		0.994512
730	16	83			0.994512
731		83	16		0.994512
732	83		16		0.994512
734		16		83	0.994512
736	83	16			0.994512
739		16		83	0.994512
936	25	75			0.996473
937	25	75			0.996473
939			25	75	0.996473
940		75		25	0.996473
982	66		33		0.997452
1108		25		75	0.996473
1336	75		25		0.996473
1373		75		25	0.996473
1374		75	25		0.996473
1378		75		25	0.996473
1379	75		25		0.996473
1381		25	75		0.996473
1382	25			75	0.996473
1383			25	75	0.996473
1390	75		25		0.996473
1391			25	75	0.996473
1393		25		75	0.996473
1394	25		75		0.996473
1396		75	25		0.996473
1398		25	75		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
494	508	TCTGT TCTGT TCTGT	15

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain