SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2456

Length: 1836 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2456

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00170, bZIP_1, bZIP transcription factor	-	-	3.0e-09	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	transcription factor bzip37	-	-	0.0	53%

Source	InterPros	Term	Type	e value	Identity
Sma3	Basic-leucine zipper domain	IPR004827	-	0.0	-
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8D1

Fln msg: your sequence is longer than subject: 573 - 323

Fln protein: MRNRESAQLSRQRKKSYIDELEEKVKSMNSTITELNNTIAFMNAENIKLKQQLGVLCQPGNAANQHPVTPLPMPYPWPPFPAYPAPVMAGGNGGRVPLLPIPRLKSHSQQQPSTPSKDRKPSKSASAAVSSEQKPAKKRIKKVASVAFLGFFFFIFFLLRICQLPDAKDLILRESSRELLGNSIEGLYRGGLLLKPRSGGRVLTSWDKGGNSTDVIDMDIGAGRLTGSEKRHDKRNPTFTDHYRHSDNDRMKMNSYIYPENNNSTALVASLFVPRNDKLVKIDGNLIIHAVLAGEKASRALSASQSRGNKDGHVDTISLQKEYEKNSLAVRTERHRALAAAAAATTDSARNVDTNTKFLGDAAQNPNYRALASNFKTSYRDDMESTAVDRSLKQWFQEGLAGPVLSSGMCTEVFQFDASPNSPSTTTNSKLVTRVASRIANNSSGQFSNNSSGSKINETRRSGSVYMSKNRRVSYAVPLPPARPPLKDRNERNFTDHAEIIHEERQYRGNNTAPSSMVVSILVDPRETNDDGMLSSGSLSRIFVVVLVDSVKYVTYSCVLPSKGSGPHLVTR*

Protein Length: 574

Fln nts: GCGAGGCTG_-_ATGAGGAATAGGGAAAGCGCTCAGCTGTCCAGACAAAGGAAGAAGAGTTACATTGACGAGCTGGAAGAGAAGGTAAAATCCATGAATTCTACGATTACCGAGTTGAATAACACCATTGCTTTTATGAATGCCGAAAATATTAAGTTAAAGCAGCAATTAGGGGTCCTCTGTCAGCCCGGTAATGCGGCAAACCAACATCCGGTGACGCCCTTGCCTATGCCTTACCCGTGGCCTCCATTTCCTGCTTACCCGGCGCCAGTTATGGCCGGTGGCAACGGAGGAAGGGTTCCTTTGCTCCCTATACCTAGACTGAAATCTCACTCGCAGCAGCAGCCTTCAACACCCTCCAAGGACCGAAAGCCCTCAAAAAGTGCTTCTGCTGCAGTTAGTTCTGAGCAGAAACCGGCAAAGAAGAGAATCAAGAAGGTTGCTAGTGTTGCTTTTCTAGGGTTTTTCTTCTTTATATTTTTCCTTCTGCGGATATGTCAACTTCCCGATGCAAAAGATTTAATACTTAGAGAAAGTAGCAGAGAATTGCTCGGTAATAGCATAGAGGGATTATACAGAGGTGGATTGTTATTGAAACCCAGAAGTGGAGGTAGAGTCTTGACAAGTTGGGACAAAGGCGGGAATTCCACGGATGTTATAGATATGGATATAGGGGCTGGGAGACTAACAGGTTCTGAAAAGAGACATGACAAACGGAATCCTACATTTACAGACCATTATAGACATTCAGACAATGATCGAATGAAGATGAACAGCTACATATATCCAGAAAACAACAATAGCACGGCGCTTGTTGCGTCTCTGTTTGTTCCCAGGAACGACAAACTTGTAAAGATCGATGGTAACCTTATAATCCATGCAGTTCTAGCTGGGGAAAAAGCCTCGAGAGCATTATCTGCCTCACAGTCTAGAGGCAACAAAGATGGGCATGTAGACACCATTTCACTTCAAAAGGAATATGAAAAGAATAGTTTGGCAGTGAGAACAGAAAGGCATCGTGCTCTTGCTGCTGCTGCTGCCGCCACTACAGATTCAGCCAGAAATGTAGACACTAACACTAAATTTCTTGGAGACGCTGCACAAAATCCGAATTACAGAGCGTTGGCCTCTAACTTCAAGACTAGCTACAGAGATGATATGGAATCAACGGCAGTGGATAGATCACTTAAGCAATGGTTTCAAGAAGGGCTTGCAGGACCTGTTTTGAGCTCAGGAATGTGTACGGAAGTCTTTCAGTTTGATGCATCTCCAAACTCTCCCTCAACAACCACAAATTCCAAGCTTGTGACACGTGTTGCTTCAAGGATTGCAAATAATTCAAGTGGGCAGTTCAGTAATAATTCTTCAGGATCAAAGATAAATGAAACTCGTAGATCAGGTTCAGTCTATATGTCAAAGAACAGAAGAGTTTCATATGCAGTTCCCTTACCCCCTGCTAGGCCCCCACTTAAGGATAGAAATGAAAGGAACTTCACGGATCATGCTGAAATTATTCATGAAGAGAGACAATACAGAGGGAACAATACAGCACCATCGTCAATGGTTGTCTCCATTTTGGTAGATCCAAGGGAGACTAATGATGATGGGATGCTGTCATCTGGAAGTCTGTCCAGGATTTTTGTTGTGGTTCTTGTTGACAGTGTGAAATATGTAACTTACTCTTGTGTACTTCCCTCAAAGGGCTCCGGACCTCATTTAGTGACGAGATGA___GGAACACCTTTGAAGAAATTTGAGTTCAGGTAAGAACATAAAATGTTAGAAATCTCTGTTTTGTTTCCAATCAAAAAATAGACCAAATAAAGTCTACTGCGAGTAAAC

Fln Alignment:

Contig2456___MKMNSYIYPENNNSTALVASLFVPRNDKLVKIDGNLIIHAVLAGEKASRALSASQSRGNKDGHVDTISLQKEYEKNSLAVRTERHRXXXXXXXXTTDSARNVDTNTKFLGDAAQNPNYRALASNFKTSYRDDMESTAVDRSLKQWFQEGLAGPVLSSGMCTEVFQFDAXXXXXXXXXXXKLVTRVASRIAXXXXXXXXXXXXXXKINETRRSGSVYMSKNRRVSYAVPLPPARPPLKDRNERNFTDHAEIIHEERQYRGNNTAPSSMVVSILVDPRETNDDGMLSSGSLSRIFVVVLVDSVKYVTYSCVLPSKGSGPHLVTR
D5A8D1______________MKMNSYIYPENNGSVALVASLFVPRNDKLVKIDGNLIIHAVLAGEKASRASSASQSRGNKDGHVDTISLKKESEKNSLAVRTERHRALAAAAAATTDSGRNVDTNTKFLGDAAENPNYRALASNFRTSYRDDMESTAVDRSLQQWFQEGLAGPVLSSGMCTEVFQFDASPNSPSTTANSKLVTSVASRIANNSGGRPSNNSSGSKINEARRSAPVYMSKNRRVSYAVPLPPAGPPLKDRNERNFTDHAEIIHDERGYRGNNTAPSSMVVSILVDPRETNDDGMLSSGSLSRIFVVVLVDSVKYVTYSCVLPAKGSGPHLVTR

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
81			75	25	0.996473
115	75		25		0.996473
125	14			85	0.993533
259	11	88			0.923564
260		88		11	0.923564
261			88	11	0.923564
289			87	12	0.992554
291	87		12		0.992554
292	87		12		0.992554
305	12			87	0.992554
307	12	87			0.992554
308		87		12	0.992554
314	11	88			0.923564
966	14			85	0.993533
969	85			14	0.993533
970	85			14	0.993533
1006			85	14	0.993533
1007	85		14		0.993533
1008	85		14		0.993533
1009	85		14		0.993533
1016	14		85		0.993533
1017		14		85	0.993533
1018	14		85		0.993533
1019		85		14	0.993533
1032		16		83	0.994512
1156	83		16		0.994512
1157			16	83	0.994512
1450	90	10			0.90298
1455		90		10	0.90298
1692	11			88	0.923564
1693	11			88	0.923564
1695	12	87			0.992554
1696		87		12	0.992554
1804	16	83			0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
1023	1037	TGC TGC TGC TGC TGC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain