SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2438

Length: 687 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2438

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Abc transporter, putative n=1 Tax=Ricinus communis RepID=B9RFV1_RICCO	-	-	5.0e-30	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Blast2go	protein trigalactosyldiacylglycerol chloroplastic-like	-	-	7.93294e-36	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	7.93294e-36	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		7.93294e-36	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	ATP catabolic process	GO:0006200	Biological Process	7.93294e-36	84%
Blast2go	lipid transport	GO:0006869	Biological Process	7.93294e-36	84%
Blast2go	ATP binding	GO:0005524	Molecular Function	7.93294e-36	84%
Blast2go	ATPase activity	GO:0016887	Molecular Function	7.93294e-36	84%
Blast2go	transporter activity	GO:0005215	Molecular Function	7.93294e-36	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	7.93294e-36	84%

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
63	87			12	0.992554
65		87	12		0.992554
66			12	87	0.992554
82	62			37	1.0
111	87		12		0.992554
170	87			12	0.992554
623	10		90		0.90298
626	10	90			0.90298
657	14			85	0.993533
660			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain