SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2411

Length: 997 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2411

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TBP-associated factor 13 n=1 Tax=Solanum melongena RepID=F4YY46_SOLME	-	-	88%
FL-Next	tr=TBP-associated factor 13; Solanum melongena (Eggplant) (Aubergine).	-	-	88%
Blast2go	transcription factor tfiid	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	90%
Blast2go	transcription initiation, DNA-dependent	GO:0006352	Biological Process	90%
Blast2go	transcription from RNA polymerase II promoter	GO:0006366	Biological Process	90%
Blast2go	DNA binding	GO:0003677	Molecular Function	90%
Blast2go	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	90%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	90%
Blast2go	transcription factor complex	GO:0005667	Cellular Component	90%
Blast2go	plastid	GO:0009536	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Transcription initiation factor IID, 18kDa subunit	IPR003195	-	0.0	-
Sma3	Histone-fold	IPR009072	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
451		75		25	1.0
585		15	5	80	1.0
586	20			80	1.0
589		15		85	1.0
932		20	80		0.995493
939			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain