SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2405

Length: 2016 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene2405
TTGGTGGGGATCGTCTATCTGCTCTCGCTGTTTTCAGATCTTCAATGGCGCGGGAACTCCATGTTCTAGGATTACCCAACAAACCAATCGAAGGATTTTCTAACAAGAAAAGCGCGATTTGGGTGTTGGGAATTCTGGCACTCTGCTCGTTATTTTACATTCTGGGCCTATGGCACACTTCTTCAATGGTAAATTCAGACACTGCAAGGTTGGCATTTAGGCAGGTACCGGCGTGCCATTTGTCGAGTCCCTCGACGCCTCTTTCGCTGGATTTCAATCTCCACCACCAAGAAGAAGAGGAGCCCTCCAGCAATGCTTCTTCATCTCAAACAGAATACTTGCCCATGTTCGAGTTTTGCGATATGAAGTACAGTGAATACACTCCCTGTGAGGACCCCGTACGCTCCAAGAAGTTTACCAACGATATGCAGTTCATGAGGGAGCGCCATTGCCCAGAGAAGAATGAGCGTCTCAGATGTATGATCCCGCCCCCACAGGGGTACAAGACTCCGTTTCCATGGCCCGAGAGTAGGGATTTCGCCTGGTATGCCAATGTGCCCCACAAGCAACTCACTGTGACCAAGGCTGAGCAGAACTGGATTCGGTTTCGGGGGGATAGGTTTCAGTTCCCAGGCGGTGGAACCTCGTTTCCGAAAGGTGCAAAGGAATATATTCAGAGCATTAACAAACTTATTCCTTTGGGCGATGGCTCCATCAGGACTGCACTTGATACTGGTTGTGGGGTTGCAAGCTGGGGCGCTTACCTAGCCAGTTACAATATTTTGACTATGTCTTTTGCACCAATAGATGTACATGAAGCACAAGTGCAGTTTGCTTTGGAGCGTGGAGTGCCAGCTATAATTGGAATAATGGGCACACGTAGACTTCCTTATCCTGCCAGGGCTTTTGACATGGCTCACTGTTCCCGATGTCTGATTCCATGGACACAATATGATGGCCTATACTTGATTGAAGTGGACAGAGTGTTGAGACCCGGTGGCTATTGGATTTTATCAGGTCCACCCATTAACGGGAAAAAACATCATAAGGGTTGGCAAAGGACTGTTGAAAGCTTAAAGCAAGAGCAAGACGCAATTGAGGATCTTGCTAAGCGGCTATGCTGGAAGAAGATTGCCGAAGCAGGTGATATTGCTATATGGAAAAAGCCTACCAATCACATTCACTGTATACAAAAACGAAAAATCTTCAAGGTTCCCATCTTTTGCCAAGAAGACAATGCAGATGCTGCTTGGTATAAAAAGATGGAGGCATGCATAACCCCATTGCCAAAGGTTGAAAATATTAAGGACATTGCAGGAATGGCCCTGGAAAAATGGCCAAAACGAGTAACAGCCATTCCACCTAGAATTACAATGGGTACTATTCCTGGAATAACAGGTGAATTATTCAATCACGATACAGAACTATGGAACAAACGCCTGATATACTATAAACGATTCATCGAAAGGCTTACCGACGGAAGATATCGTAACATTATGGACATGAATGCTGGGTTGGGAGGCTTTGCTGCTGCCTTGGCTAAATACCAAGTTTGGGTAATGAATGCTGTCCCGGCAGATGCTAAAAACAACACTCTTGGTATCATTTATGAACGAGGGCTAATCGGAACATACATGGACTGGTGTGAAGCCTTTTCAACCTACCCGAGGACATATGATCTTATTCATGCCAATGGCATTTTCAGCATGTACCAGGATAGGTGTGATATGGTAGACATTCTTTTGGAGATGGACCGTATACTACGCCCAGGAGGAGCAGTTATCATTCGTGACAGTGTGGATGCTCTTGTCAAAGTAAAGAAATAACTGATAGAATGAGATGGCAAAGCCAGCTCGCACACAATGAAAGAGGCCCTTTTAGTGCAGAAAAGATCCTTTTTCTTAACAATACACGATTGACTGATATCAAGGCACAATCACAGGAAATTTCATAGTGATAATTTGGATATCTAATAGATGCTCTGGGTTCCTGAGAGTGGTCACTCTGAATTTGAAG

Ace file of the UniGene sp_v2.0_unigene2405 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RYZ7_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	atp binding	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring one-carbon groups, Methyltransferases.	EC:2.1.1.-	-	0.0	74%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	74%
Blast2go	Tetracycline biosynthesis	00253	74%
Blast2go	Histidine metabolism	00340	74%
Blast2go	Tyrosine metabolism	00350	74%
Blast2go	Phenylalanine metabolism	00360	74%
Blast2go	Tryptophan metabolism	00380	74%
Blast2go	Benzoxazinoid biosynthesis	00402	74%
Blast2go	Selenocompound metabolism	00450	74%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	74%
Blast2go	Polycyclic aromatic hydrocarbon degradation	00624	74%
Blast2go	Methane metabolism	00680	74%
Blast2go	Porphyrin and chlorophyll metabolism	00860	74%
Blast2go	Carotenoid biosynthesis	00906	74%
Blast2go	Phenylpropanoid biosynthesis	00940	74%
Blast2go	Flavonoid biosynthesis	00941	74%
Blast2go	Anthocyanin biosynthesis	00942	74%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	74%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	74%
Blast2go	Insect hormone biosynthesis	00981	74%
Blast2go	Biosynthesis of type II polyketide products	01057	74%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	74%
Blast2go	Metabolic pathways	01100	74%
Blast2go	Biosynthesis of secondary metabolites	01110	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	methylation	GO:0032259	Biological Process	0.0	74%
Blast2go	methyltransferase activity	GO:0008168	Molecular Function	0.0	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLQ2

Fln msg: Overlapping hits, possible frame ERROR between 1823 and 1817,

Fln protein: MARELHVLGLPNKPIEGFSNKKSAIWVLGILALCSLFYILGLWHTSSMVNSDTARLAFRQVPACHLSSPSTPLSLDFNLHHQEEEEPSSNASSSQTEYLPMFEFCDMKYSEYTPCEDPVRSKKFTNDMQFMRERHCPEKNERLRCMIPPPQGYKTPFPWPESRDFAWYANVPHKQLTVTKAEQNWIRFRGDRFQFPGGGTSFPKGAKEYIQSINKLIPLGDGSIRTALDTGCGVASWGAYLASYNILTMSFAPIDVHEAQVQFALERGVPAIIGIMGTRRLPYPARAFDMAHCSRCLIPWTQYDGLYLIEVDRVLRPGGYWILSGPPINGKKHHKGWQRTVESLKQEQDAIEDLAKRLCWKKIAEAGDIAIWKKPTNHIHCIQKRKIFKVPIFCQEDNADAAWYKKMEACITPLPKVENIKDIAGMALEKWPKRVTAIPPRITMGTIPGITGELFNHDTELWNKRLIYYKRFIERLTDGRYRNIMDMNAGLGGFAAALAKYQVWVMNAVPADAKNNTLGIIYERGLIGTYMDWCEAFSTYPRTYDLIHANGIFSMYQDRCDMVDILLEMDRILRPGGAVIIRDSVDALVKxxxxTDRMRWQSQLAHNERGPFSAEKILFLNNTRLTDIKAQSQEIS*

Protein Length: 638

Fln nts: TTGGTGGGGATCGTCTATCTGCTCTCGCTGTTTTCAGATCTTCA_-_ATGGCGCGGGAACTCCATGTTCTAGGATTACCCAACAAACCAATCGAAGGATTTTCTAACAAGAAAAGCGCGATTTGGGTGTTGGGAATTCTGGCACTCTGCTCGTTATTTTACATTCTGGGCCTATGGCACACTTCTTCAATGGTAAATTCAGACACTGCAAGGTTGGCATTTAGGCAGGTACCGGCGTGCCATTTGTCGAGTCCCTCGACGCCTCTTTCGCTGGATTTCAATCTCCACCACCAAGAAGAAGAGGAGCCCTCCAGCAATGCTTCTTCATCTCAAACAGAATACTTGCCCATGTTCGAGTTTTGCGATATGAAGTACAGTGAATACACTCCCTGTGAGGACCCCGTACGCTCCAAGAAGTTTACCAACGATATGCAGTTCATGAGGGAGCGCCATTGCCCAGAGAAGAATGAGCGTCTCAGATGTATGATCCCGCCCCCACAGGGGTACAAGACTCCGTTTCCATGGCCCGAGAGTAGGGATTTCGCCTGGTATGCCAATGTGCCCCACAAGCAACTCACTGTGACCAAGGCTGAGCAGAACTGGATTCGGTTTCGGGGGGATAGGTTTCAGTTCCCAGGCGGTGGAACCTCGTTTCCGAAAGGTGCAAAGGAATATATTCAGAGCATTAACAAACTTATTCCTTTGGGCGATGGCTCCATCAGGACTGCACTTGATACTGGTTGTGGGGTTGCAAGCTGGGGCGCTTACCTAGCCAGTTACAATATTTTGACTATGTCTTTTGCACCAATAGATGTACATGAAGCACAAGTGCAGTTTGCTTTGGAGCGTGGAGTGCCAGCTATAATTGGAATAATGGGCACACGTAGACTTCCTTATCCTGCCAGGGCTTTTGACATGGCTCACTGTTCCCGATGTCTGATTCCATGGACACAATATGATGGCCTATACTTGATTGAAGTGGACAGAGTGTTGAGACCCGGTGGCTATTGGATTTTATCAGGTCCACCCATTAACGGGAAAAAACATCATAAGGGTTGGCAAAGGACTGTTGAAAGCTTAAAGCAAGAGCAAGACGCAATTGAGGATCTTGCTAAGCGGCTATGCTGGAAGAAGATTGCCGAAGCAGGTGATATTGCTATATGGAAAAAGCCTACCAATCACATTCACTGTATACAAAAACGAAAAATCTTCAAGGTTCCCATCTTTTGCCAAGAAGACAATGCAGATGCTGCTTGGTATAAAAAGATGGAGGCATGCATAACCCCATTGCCAAAGGTTGAAAATATTAAGGACATTGCAGGAATGGCCCTGGAAAAATGGCCAAAACGAGTAACAGCCATTCCACCTAGAATTACAATGGGTACTATTCCTGGAATAACAGGTGAATTATTCAATCACGATACAGAACTATGGAACAAACGCCTGATATACTATAAACGATTCATCGAAAGGCTTACCGACGGAAGATATCGTAACATTATGGACATGAATGCTGGGTTGGGAGGCTTTGCTGCTGCCTTGGCTAAATACCAAGTTTGGGTAATGAATGCTGTCCCGGCAGATGCTAAAAACAACACTCTTGGTATCATTTATGAACGAGGGCTAATCGGAACATACATGGACTGGTGTGAAGCCTTTTCAACCTACCCGAGGACATATGATCTTATTCATGCCAATGGCATTTTCAGCATGTACCAGGATAGGTGTGATATGGTAGACATTCTTTTGGAGATGGACCGTATACTACGCCCAGGAGGAGCAGTTATCATTCGTGACAGTGTGGATGCTCTTGTCAAAxxxxxxxxxxxxACTGATAGAATGAGATGGCAAAGCCAGCTCGCACACAATGAAAGAGGCCCTTTTAGTGCAGAAAAGATCCTTTTTCTTAACAATACACGATTGACTGATATCAAGGCACAATCACAGGAAATTTCATAG___TGATAATTTGGATATCTAATAGATGCTCTGGGTTCCTGAGAGTGGTCACTCTGAATTTGAAG

Fln Alignment:

Contig2405___MARELHVLGLPNKPIEGFSNKKSAIWVLGILALCSLFYILGLWHTSSMVNSDTARLAFRQVPACHLSSPSTPLSLDFNLHHQXXXXXXXXXXXXXXEYLPMFEFCDMKYSEYTPCEDPVRSKKFTNDMQFMRERHCPEKNERLRCMIPPPQGYKTPFPWPESRDFAWYANVPHKQLTVTKAEQNWIRFRGDRFQFPGGGTSFPKGAKEYIQSINKLIPLGDGSIRTALDTGCGVASWGAYLASYNILTMSFAPIDVHEAQVQFALERGVPAIIGIMGTRRLPYPARAFDMAHCSRCLIPWTQYDGLYLIEVDRVLRPGGYWILSGPPINGKKHHKGWQRTVESLKQEQDAIEDLAKRLCWKKIAEAGDIAIWKKPTNHIHCIQKRKIFKVPIFCQEDNADAAWYKKMEACITPLPKVENIKDIAGMALEKWPKRVTAIPPRITMGTIPGITGELFNHDTELWNKRLIYYKRFIERLTDGRYRNIMDMNXXXXXXXXXXAKYQVWVMNAVPADAKNNTLGIIYERGLIGTYMDWCEAFSTYPRTYDLIHANGIFSMYQDRCDMVDILLEMDRILRPGGAVIIRDSVDALVKVxxITDRMRWQSQLAHNERGPFSAEKILFLNNTRLTDIKAQSQEIS
B8LLQ2______________MARELHVPGLPNKPAEGLSRKKNAMWVLGILALCSLFYILGLWHTSSMVNSDTARLAFRQVPACHLSSTSTPISLDFDLHHQEEEPSSNASSSQIQ-YLPMFEPCHMKYSEYTPCEDPERSKKFTNEKQFMRERHCPEKNERLRCLIPDPPGYKTPFPWPESRDFAWYANVPHKQLTVAKAEQNWIRFRGDRFQFPGGGTSFRNGAKEYIQGINKLIPLTDGSIRIALDTGCGVASWGAYLASYNILTMSFAPIDIHEAQVQFALERGLPAMIGILGTRRLPYPARAFDMAHCSRCLIPWTQYDGLYLIEVDRVLRPGGYWILSGPPINWKNHHKGWERTVQSLKQEQEAIEDLAKRLCWKKIAEAGDIAIWKKPTNHIHCIQKRKIFKVPTFCQEDNADAAWYKKMETCITPLPKVKNIKDIAGMALEKWPKRVTAIPPRITMHTIPGITGELFNQDTKLWNKRLIYYRRFIERLTDGKYHNIMDMNAGLGGFAAALANYQVWVMNVVPADAKNNTLGIIYERGLIGTYMDWCEAFSTYPRTYDLIHANGIFSMYQDRCDMVDILLEMDRILRPEGAVIIRDSVDVLVKVxxITDRMRWQSQLTHNERGPFSAEKILFLNNTRLIDIKVQSEEIS

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
187	33			66	0.997452
188		66		33	0.997452
189	66		33		0.997452
190			66	33	0.997452
195		33		33	0.997753
288	10	90			0.90298
291	90		10		0.90298
363	90	10			0.90298
364	90	10			0.90298
377	88			11	0.923564
379	11			88	0.923564
380	11	88			0.923564
381		88	11		0.923564
383	11			88	0.923564
384	11		88		0.923564
389		11		88	0.923564
391		88	11		0.923564
396		14		85	0.993533
399	14	85			0.993533
400	14	85			0.993533
403		85		14	0.993533
405			14	85	0.993533
479	11	88			0.923564
482	88			11	0.923564
483	44		44	11	1.0
485		90		10	0.90298
598	11		88		0.923564
619	14	85			0.993533
640	50	50			1.0
1731			33	66	0.997452
1732		33		66	0.997452
1734	33		66		0.997452
1735	33			66	0.997452
1736			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain