SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2402

Length: 1569 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2402

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	68%
Blast2go	thymidylate kinase	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	76%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7SHU8

Fln msg:

Fln protein: MPGPGPHLMYTLAVGTGLMSVSKGRFTPHHCLIYAVNAFLGPDIGSFSEWLTSTIAMGQSLGSRIMDIVHDPLYYILILGIPLSVFYSWVSKVALKKGFLSALSGVPLSRLQCLLLISAGSLSHFFLDHLFEENGHSTTFTWIISTGWWEGRAPVNKEAVIVVGILCTCLLGGFIYINRTKPGKVGSQSGKSLQLIGVIASLYCLWCASQIYWRSPHQPAVGEEADLGVLVFLTIYFFLPHFLCIAAMHPIESSPLNEELPL*

Protein Length: 264

Fln nts: ACGGTTTCGATCCAAATAAGATTCTGAAGGCTCTTGAGAGTATCGATCCCTGTACAATTACCTTAAAGAACTGAAGGAGGAAAGACTGTTGGTGGAAGGGAGGGACATAAGAGTTAAAC_-_ATGCCAGGTCCAGGGCCTCATCTGATGTACACTCTTGCAGTGGGTACAGGACTCATGAGTGTCTCCAAAGGGAGATTCACACCTCACCATTGCCTCATCTATGCCGTCAATGCCTTTCTGGGTCCTGATATCGGTTCATTTTCGGAATGGTTAACTTCTACAATTGCGATGGGCCAAAGCCTGGGATCAAGAATTATGGATATCGTTCATGATCCCTTGTATTATATTCTTATCCTTGGTATTCCTCTTTCAGTATTTTACAGCTGGGTCTCGAAAGTTGCACTGAAAAAGGGCTTCCTCAGCGCTCTATCTGGGGTACCTCTAAGCAGGTTGCAGTGCTTGTTACTGATTTCTGCTGGCTCATTGTCACATTTTTTCTTAGATCACCTTTTCGAGGAAAATGGACATTCTACTACATTCACTTGGATAATCAGTACAGGATGGTGGGAGGGGAGAGCTCCAGTCAATAAGGAAGCTGTTATAGTGGTTGGTATTTTGTGCACCTGTTTACTTGGGGGTTTTATTTACATTAACAGGACAAAACCAGGTAAAGTTGGAAGTCAATCAGGCAAATCTCTACAACTTATTGGAGTAATTGCAAGCCTTTATTGCTTATGGTGTGCCAGCCAGATCTACTGGCGAAGTCCACATCAACCAGCTGTTGGTGAAGAAGCTGACCTTGGAGTACTTGTATTTCTCACCATTTATTTCTTTCTTCCTCATTTCTTGTGCATTGCAGCTATGCATCCCATTGAGTCTTCACCTTTAAATGAGGAATTGCCATTATGA___AATTGAAACTCAGTCTTAATGAGATCTGGATTTGATACCTGAGTGCTGACTCAAGACAAATCATATTTATCTAAGGGTGCCATGCCTAGCTGCTGTCCAAAGGACCTTTCTTCCATTTCAGTTTCACGTGACATTTTTACGGGAACTATTTGGATCTCTTCTTTCCTCAATTTCACCACACAATTAGCAGATTGCATTCTATAGGGTAAGCCACAGGGTACTGATCTTGTGCACTGTCTTGGAATTATCAGTGACCTTCGCAGTCCCTTTGGAATGGTCAGGTAGTTTTCCATGAATGCTAAATGTTGATCAAATCGGTGAAATTTCCACAGCTTAACCCCACAAATGTAATGTTTGTGTTGGTTCAGTCTCCATCAAGCTTGATTCTGCAGTCGTACCACTGCTTGATTCACTCAGTAATTTTATGTAATATCTTTTGGAATCAATGTTCTGCAATATTCTTGTTGGCTGTAGGTCTCGACTCTCAACTAGTTTGCAGATTCAAGAAGATATGATCTGGATGGTTTGCTGAACCTCGGTCAGCTGGATGAGATGTCTTGTCCTCTATTTGAACCCTTTTCTTGTTTAAATCATTTAATAAATTGTTGAGTTTGTGTAGCAGTTGTTATGTACCCATAATGAGAGGAATACTTATCAAGAC

Fln Alignment:

Contig2402___MPGPGPHLMYTLAVGTGLMSVSKGRFTPHHCLIYAVNAFLGPDIGSFSEWLTSTIAMGQSLGSRIMDIVHDXXXXXXXXXXXXSVFYSWVSKVALKKGFLSALSGVPLSRLQCLLLISAGSLSHFFLDHLFEENGHSTTFTWIISTGWWEGRAPVNKEAVIVVGILCTCLLGGFIYINRTKPGK-VGSQSGKSLQLIGVIASLYCLWCASQIYWRSPHQPAVGEEADLGVLVFLTIYFFLPHFLCIAAMH
D7SHU8______________MPGPGPHMMYALGSSLGLMSTSNGRFSPHHSLAYAINAFFGPDLGSFSEWLTSTLGFGHSFGSALADVIHDPFFYIVILGLPLSFLYSWLSRVLLQRGFLDSVSGVPLTRRQCLLLISAGSLSHFFLDHLFEENGHSSMYTWILSTGWWKNRAPVNPDAVVVVGFLCASLIGGFMYINRLKPSKSIKKQTSQSVKLIVIIATLYCLWCASQIYWVNPRRAAVGEEADLGVLVFLAIYFFLPHTFCIMSMN

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
871	12		87		0.992554
875		85		14	0.993533
960		14		85	0.993533
1026		60		40	1.0
1060	85			14	0.999981
1064	85			14	0.999981
1168		10		90	0.90298
1194		10		90	0.90298
1200	88			11	0.923564
1202		11		88	0.923564
1203	11			88	0.923564
1204			11	88	0.923564
1206		88	11		0.923564
1207	11	88			0.923564
1208	88		11		0.923564
1213			11	88	0.923564
1216		11		88	0.923564
1218	88	11			0.923564
1222	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain