SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2352

Length: 2726 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene2352
CGTCGTGACCTTGGCTGTCACTCAAGTTGAAGAGAATTCCATCACTAACGGTGTTTCTAATCAGAGTGAAGGACATAGCCGAAATGTGTCACTTTCAAGTACTGCTTCTAGCTTAGATGATGGTCAAACATCAGCAGGTGGTGATGCACCTATTTCAGAGGGGAATAGTAATACAGCTTTAAGTGACTGCTCTCCATACAGCAGTGATGTTTCGGGAGAGTTAGCTGCACCATCATCAGTGACCCATTCACAACGCAATGATATAGGACCTTCCAGATTGTCTGAAAGAGTATTCCATGGTGGACGTCTCCCAAATTTGTATGGACGGCGAACTGAGCACCGTAGTACCATGCCTTTGGTTATCTCTTCTCCAGTATCTGATACAAGTGCTAATGAGTCGAGCATCCGTCAACAAGTTGAGAGATTGGTAGAAGATCTTCAAAGTGATTCAGTTGAAATACAAAGAGCAGCAGCAGGAGAGCTACGAATTCTCGCCAAATGCAACATGGAAAACCGGATCATAATAGCTAACTGTGGCGCGACCAGGCCTTTAGTTGCGTTGCTAAGTTCTCCTGACTTTGAGACCCAAGAAGTTGCTGTTACGGCTTTGCTGAACTTATCCATAAATGATAATAATAAGAATGAGATTGCTGCTGCAGGAGCCATTGAACCTCTCATAAATGTCCTTACAGTAGGCAACTCTGAAGCGAAAGAGAATGCTGCTGCAACTTTATTCAGCTTATCTGTCATGGAAGAAAATAAAATTGCTATCGGGCAATCAGGTGCTATACCACCACTGGTGGATCTCCTCATGAATGGCACTCCCAGAGGAAAAAAGGACGCTGCTACTGCTTTGTTTAACTTGTCAATTTCACCTGACAACAAAGCCCGTATTGTACGTGCTGGCGCTGTTAAACATCTTATTAGTCTAATGGAGCCTGCAGCTGGAATGGTAGATAAAGCTGTGGCTGTTTTGGCCAATCTTGCAACTATTCATGAAGGTCGAGCTGCAATTGGTGAGGAGCGTGGCATTCCTGCTTTGGTAGAAGTAGTTGAAATTGGTTCACAAAGGGGAAAGGAAAATGCAGCAGCAGCTCTACTCCAACTTTGTATAAATAGCAGTAAGTTTCGTGCTACTGTTTTACAAGAGGGTGCTATTCCACCTCTTGTTGCATTATCTCAGTCTGGCACCCCACGGGCTAAGGAGAAGGCTCAGGCTCTTCTTCGCCATTTTAGGGATCAGCGGCATGCAAGCATGGGAAGGGGTGGTGCCGATAGACACAGATAGACATTTTGATCTAATGTGTAACATCTCATATGCCTCATCTTCTTGCTGCCCCTACTTTAAGATGTATCAGTTGTTTGTGCTTATGTGGGCATTCTTCAAACCAAAAGCCCCCAGGTTAGTAATTTGGTATATTCATATTGTACCTATGGTTTGTAGTTGCAGATGGTTCTGCATGTGATTTCCATGCACCTTTTATATGTGGGTCCTTCCATGCATAATTACTGTTAGCAGTCAGAAACATCTTGTATCAGTTAAGCATCAAGATTGTTTCAAATGAAGTCCTTGCTATTTGTGTCAAAGAGGGAAGAATGGCATAGATGTCATGTTATGGCATCTGTAGCTAGCTGTTTTCAACATATCATTTTTATGCATCATCACTGCTGCCATTTATTTAGGGTATCAATTGGTGACTTTTCAGTTGGATACAAGTTGCAGAGTTTATCCAAGAGAGTTCATAAATGGACTTAATATTCTGTTGAAGCTTCTCATATTTTCAACTTTAAAGGGCAGATCTGATATGCAGAGTTGTCTAGCCAATCTCAACTTATTGACTTGTTTGGTTTGTACTTTTGGCGTATTGTGTGGAAATATTGAATCCGGCTCATTCTGGTGGATAAGCTTCCATTGCTGGTGCACAGGCAATCGACTGCTCTGAAGCATGATACTTCTAATGGCTCATGGACCCAGAAATTGTGTTAAACATGAAGTTGGCTGCAGATGGGTCTTGAATTTATGCTGATCCCACTGCAGTGCTCTGCCCAACCTTGACATTGTTTGTTCACTGCATGTAAACCCCCACTTGCAGTTTAGATTTCATGTTCAGAAGTTTTCAGAAGGGAAGGCAGCTTTTCTGCATTGCTCATCTATGCCTTGATTCTGCTTTAGAGGAGCAAAGCATGAGGTGATGCTCTGTTGTCGTTACTTTTTGCTGTTCTCTTTTCGATGGAATGATCTAGGAAGGATGCAGATAATTGGAACATAGCTCGGCTCTGAATCTTGATTATCATTTGACTGTCAAATAAGTATAGAGCTGAGCAACTTCTTTTCCCGATGCTACCATGTTTGACCTTGTACCCTAGGTTCCGAACTTCCGAATATATGAAATGGTTTCCTGTGTTGAATTTTGAGGATACAGATCTATTTGTCTGCATTGATTTACATCAGTAGCAGGTTCTGACATCGTGTCTATTGTATTTGCTTGTTACTTCGTTTCATTGTGCTTACCAAAAGTTGATAGCATCCTGAATAATGTATTTGTGGCTCAGCAAAATGCCCTTCGTCTAAACGGAATCTATTGTAAATTCATTGTGTTGGTGGTTGCTTAAAAAGGGCTGGAATAGTTCCAGGCAATCAGACTTTGATAAAGGATAGGTATTCAATTTTTTTTCTCTCGATGACTTCTGAGTTGTAGATGTGGAATAATAAAGTTATAGACTTG

Ace file of the UniGene sp_v2.0_unigene2352 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	KAP multi-domain protein	-	-	6.0e-08	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	u-box domain-containing protein 4-like	-	-	0.0	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	73%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	73%
Blast2go	binding	GO:0005488	Molecular Function	73%
Blast2go	ubiquitin ligase complex	GO:0000151	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	ThiJ/PfpI	IPR002818	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Cyclin, C-terminal	IPR004367	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin, N-terminal	IPR006671	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Cyclin-like	IPR013763	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: your sequence is shorter than subject: 429 - 497

Fln protein: VVTLAVTQVEENSITNGVSNQSEGHSRNVSLSSTASSLDDGQTSAGGDAPISEGNSNTALSDCSPYSSDVSGELAAPSSVTHSQRNDIGPSRLSERVFHGGRLPNLYGRRTEHRSTMPLVISSPVSDTSANESSIRQQVERLVEDLQSDSVEIQRAAAGELRILAKCNMENRIIIANCGATRPLVALLSSPDFETQEVAVTALLNLSINDNNKNEIAAAGAIEPLINVLTVGNSEAKENAAATLFSLSVMEENKIAIGQSGAIPPLVDLLMNGTPRGKKDAATALFNLSISPDNKARIVRAGAVKHLISLMEPAAGMVDKAVAVLANLATIHEGRAAIGEERGIPALVEVVEIGSQRGKENAAAALLQLCINSSKFRATVLQEGAIPPLVALSQSGTPRAKEKAQALLRHFRDQRHASMGRGGADRHR*

Protein Length: 430

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTGAAGAGAATTCCATCACTAACGGTGTTTCTAATCAGAGTGAAGGACATAGCCGAAATGTGTCACTTTCAAGTACTGCTTCTAGCTTAGATGATGGTCAAACATCAGCAGGTGGTGATGCACCTATTTCAGAGGGGAATAGTAATACAGCTTTAAGTGACTGCTCTCCATACAGCAGTGATGTTTCGGGAGAGTTAGCTGCACCATCATCAGTGACCCATTCACAACGCAATGATATAGGACCTTCCAGATTGTCTGAAAGAGTATTCCATGGTGGACGTCTCCCAAATTTGTATGGACGGCGAACTGAGCACCGTAGTACCATGCCTTTGGTTATCTCTTCTCCAGTATCTGATACAAGTGCTAATGAGTCGAGCATCCGTCAACAAGTTGAGAGATTGGTAGAAGATCTTCAAAGTGATTCAGTTGAAATACAAAGAGCAGCAGCAGGAGAGCTACGAATTCTCGCCAAATGCAACATGGAAAACCGGATCATAATAGCTAACTGTGGCGCGACCAGGCCTTTAGTTGCGTTGCTAAGTTCTCCTGACTTTGAGACCCAAGAAGTTGCTGTTACGGCTTTGCTGAACTTATCCATAAATGATAATAATAAGAATGAGATTGCTGCTGCAGGAGCCATTGAACCTCTCATAAATGTCCTTACAGTAGGCAACTCTGAAGCGAAAGAGAATGCTGCTGCAACTTTATTCAGCTTATCTGTCATGGAAGAAAATAAAATTGCTATCGGGCAATCAGGTGCTATACCACCACTGGTGGATCTCCTCATGAATGGCACTCCCAGAGGAAAAAAGGACGCTGCTACTGCTTTGTTTAACTTGTCAATTTCACCTGACAACAAAGCCCGTATTGTACGTGCTGGCGCTGTTAAACATCTTATTAGTCTAATGGAGCCTGCAGCTGGAATGGTAGATAAAGCTGTGGCTGTTTTGGCCAATCTTGCAACTATTCATGAAGGTCGAGCTGCAATTGGTGAGGAGCGTGGCATTCCTGCTTTGGTAGAAGTAGTTGAAATTGGTTCACAAAGGGGAAAGGAAAATGCAGCAGCAGCTCTACTCCAACTTTGTATAAATAGCAGTAAGTTTCGTGCTACTGTTTTACAAGAGGGTGCTATTCCACCTCTTGTTGCATTATCTCAGTCTGGCACCCCACGGGCTAAGGAGAAGGCTCAGGCTCTTCTTCGCCATTTTAGGGATCAGCGGCATGCAAGCATGGGAAGGGGTGGTGCCGATAGACACAGATAG___ACATTTTGATCTAATGTGTAACATCTCATATGCCTCATCTTCTTGCTGCCCCTACTTTAAGATGTATCAGTTGTTTGTGCTTATGTGGGCATTCTTCAAACCAAAAGCCCCCAGGTTAGTAATTTGGTATATTCATATTGTACCTATGGTTTGTAGTTGCAGATGGTTCTGCATGTGATTTCCATGCACCTTTTATATGTGGGTCCTTCCATGCATAATTACTGTTAGCAGTCAGAAACATCTTGTATCAGTTAAGCATCAAGATTGTTTCAAATGAAGTCCTTGCTATTTGTGTCAAAGAGGGAAGAATGGCATAGATGTCATGTTATGGCATCTGTAGCTAGCTGTTTTCAACATATCATTTTTATGCATCATCACTGCTGCCATTTATTTAGGGTATCAATTGGTGACTTTTCAGTTGGATACAAGTTGCAGAGTTTATCCAAGAGAGTTCATAAATGGACTTAATATTCTGTTGAAGCTTCTCATATTTTCAACTTTAAAGGGCAGATCTGATATGCAGAGTTGTCTAGCCAATCTCAACTTATTGACTTGTTTGGTTTGTACTTTTGGCGTATTGTGTGGAAATATTGAATCCGGCTCATTCTGGTGGATAAGCTTCCATTGCTGGTGCACAGGCAATCGACTGCTCTGAAGCATGATACTTCTAATGGCTCATGGACCCAGAAATTGTGTTAAACATGAAGTTGGCTGCAGATGGGTCTTGAATTTATGCTGATCCCACTGCAGTGCTCTGCCCAACCTTGACATTGTTTGTTCACTGCATGTAAACCCCCACTTGCAGTTTAGATTTCATGTTCAGAAGTTTTCAGAAGGGAAGGCAGCTTTTCTGCATTGCTCATCTATGCCTTGATTCTGCTTTAGAGGAGCAAAGCATGAGGTGATGCTCTGTTGTCGTTACTTTTTGCTGTTCTCTTTTCGATGGAATGATCTAGGAAGGATGCAGATAATTGGAACATAGCTCGGCTCTGAATCTTGATTATCATTTGACTGTCAAATAAGTATAGAGCTGAGCAACTTCTTTTCCCGATGCTACCATGTTTGACCTTGTACCCTAGGTTCCGAACTTCCGAATATATGAAATGGTTTCCTGTGTTGAATTTTGAGGATACAGATCTATTTGTCTGCATTGATTTACATCAGTAGCAGGTTCTGACATCGTGTCTATTGTATTTGCTTGTTACTTCGTTTCATTGTGCTTACCAAAAGTTGATAGCATCCTGAATAATGTATTTGTGGCTCAGCAAAATGCCCTTCGTCTAAACGGAATCTATTGTAAATTCATTGTGTTGGTGGTTGCTTAAAAAGGGCTGGAATAGTTCCAGGCAATCAGACTTTGATAAAGGATAGGTATTCAATTTTTTTTCTCTCGATGACTTCTGAGTTGTAGATGTGGAATAATAAAGTTATAGACTTG

Fln Alignment:

Contig2352___HRSTMPLVISSPVSDTSANESSIRQQVERLVEDLQSDSVEIQRAAAGELRILAKCNMENRIIIANCGATRPLVALLSSPDFETQEVAVTALLNLSINDNNKNEIAAAGAIEPLINVLTVGNSEAKENAAATLFSLSVMEENKIAIGQSGAIPPLVDLLMNGTPRGKKDAATALFNLSISPDNKARIVRAGAVKHLISLM-EPAAGMVDKAVAVLANLATIHEGRAAIGEERGIPALVEVVEIGSQRGKENAAAALLQLCINSSKFRATVLQEGAIPPLVALSQSGTPRAKEKAQALLRHFRDQRH
C0PSB5______________HGVEIPSKAGSSRSDSSDVSFGNRTSIDILVQQLYSRQIDVQRAAAEEIRLLAKRNADNRLLIAEAGAIPQLVKLLSSTDMKTQEHAVTALLNLSIHSSNKGFIVQAGAINRIIDVLKHGSTEARENAAATLFSLSVVDENKVIIGASGAIPPLVDLLRDGTVRGKKDAATAIFNLSIYQGNKFRAVRAGVVPPLIALLVDQSIGMVDEALAILAILATHQEGRIAIGQQSAIDILVELIHSGSARNKENAAAVLLALGMNDSSHLLAAMQLGVFEYLIELAQNGTARARRKARGLLDLISKQEH

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
1499	16			83	0.994512
1622	87		12		0.992554
1672		12		87	0.992554
1744	88	11			0.923564
1745	88	11			0.923564
1751	25		75		1.0
1752		75	25		1.0
1753		75		25	1.0
1754	75		25		1.0
1767		75	25		1.0
1769		25		75	1.0
1774			25	75	1.0
1777		75	25		1.0
2020		75		25	0.996473
2201	33		66		1.0
2334			20	80	0.995493
2379		87	12		0.992554
2383	12		87		0.992554
2384		12		87	0.992554
2387		12		87	0.992554
2389	12	87			0.992554
2395	12			87	0.992554
2399	12			87	0.992554
2572		20		80	0.995493
2591			25	75	0.996473
2595	25	75			0.996473
2597		75	25		0.996473
2598		75	25		0.996473
2600		25	75		0.996473
2601	25	75			0.996473
2602		25		75	0.996473
2605		25		75	0.996473
2626	66			33	0.997452
2631		66		33	0.997452
2637	33			66	0.997452
2638			33	66	0.997452
2639		33	66		0.997452
2640	66	33			0.997452
2646		33	66		0.997452
2652	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain