SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2345

Length: 2707 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene2345
TCGAGTCATGGAGGGGAGGTTGCTTTTGCTTTTCGGTATGGCGATGTTCATCTATTCTCTGGCAGTAGCTTTAATCTCATGACCACGACTGTCCCAATGGTTGGGGTTTCTGTTGCCCTACCAGCTTTCTCTTCTACTAGCTGTTGCCTGGCCTCTGTTTGGCATGATAACAGCAAGGATTGCACTGTACTGAAGATTCTGCGTATTCTACCTCCTGCTAGTCAAAGTAGTCAAGGGAAAGGTAATGCAGCTGCCTGGGAACGAGCTATAGCAGACAGATTTTGGTGGAGCCTCTCAGTTGGAGTTGATTGGTGGGATGCTGTTGGTTGTGCACAAAGCGCAGCGGAAGATGATATAGTGGCAATTAACAGGGTAATTGCAGTGCTGGATTCAGACTTCCATTCACTAGCTACAATCCAACATCGTCAACAATATGGGCCTGCTTTGGATAGAATAAAATGCAGACTACTTGAGGGTACAGTTGCCCAAGATGTTAGGGCACTTGTTCTAGATATGCAGGCAAGGTTGTTGCTTGACATGCTGGGAAAGGGCATTGAGTCTGCTCTCGTAAGTCCCGCAACTTTAATGGTTGAGCCTTGGCAGGCCTCTAGTGAGACTTTAACACAACTTGGAACTGATGCCATGACAGTTGATCCAGCTCTTGTTCCTATTATCCAGGCATTTGTTGATGCCGTTCTTGATTTGGCTTCCCATTTTCTCACACGTCTGCGGCGCTATGCAAGCTTTTGTCGTACATTAGCTACTCATGTTGGAACATCAACGAATCCAGGAAGCAATCGCAATATGGGTGCAAGTCCAACTTCTGGAGGGGCTTCTCCGTCTCCTGGCCAAGGAGGTCCAGGTGGAACAACAAGTAACCCTGGAAATATACAAATGCAAGCATGGGTCCAAGGTGCCATTGCCAAGATTAGCGGTAATACAGAAGGAAGTCCAACCACAACACCGAGTTCATTAAATGGGCATGCTCCTATGCTGACACTTAGTGTAAATACAGCAACATTTCCAGGAACACCTGCTGTGAGACTAATTGGAGATTGCCATTTCCTTCATAGGTTATGCCAATTGTTATTATTCTGTTTGATTTTCCGCAGAAGGCAGTTGCCCCGTTTCATTAATACAGTACAAAGGAACCCTGATGTGCAGTCAGGCAAGCCACAGGCAGGTTTCGGAGGGAAAAGCTTTGAAGAATTAAATCAAGCTGCTTCTAGGCCCTCTTCTGCACCATCAGTTGTTAAAAATGAAGAGGCACAAGGTGTCAGGACTGGACAACAGATTCCTGGGTTCAAAGGACTAGATGAAAATTCTAGTGGTCGGACTATGCGCTTAGGGAATGGAAATGCTGGTCAAGGTTACACAGCAGAAGAGGTGAAGGTTCTTTTTCTTGTATTGGTGGACCTCTGTAAAAGAACTGCACCGTTGGAACACAATTTACCCAAGTCACAAGTTGGGGTTCCCAATGCAAACATATCTCTGCATTACATAGACGGGCAGTATAAGGTTGCACCGGAGGTGGTAGAGGCATCTCTTGGACCTCACATGCAGACTTTGCCTCGACCACGGGGTGCGGATGCTGCTGGCTTGTTACTTCGTGAATTAGAACTTCACCCACCTGCAGAAGATTGGCATAAACGCAACATGTTTGGTGGACCTTGGTCTGATCTTGGAGATCTCCAATCATCCCTAGATGAACAGAATACCAACACAAACATAGCTTCTTCATCAGGCATATGTGACATTACAACAGGGAAACATTCTGATGATTATGAAGGTGTAAAAGGACTGTGGCCAAGAAAACGAAGATTTTCTGAGAGGGATGCAGCATTTGGTCTGAAGACAGCTGTAGGAATGGGAGCATACTTAGGACTTATGGGATCCCGAAGGGATGTCATTACTGCATCGTGGAAAACGGGATTACATGGTGTATGGCACAAGTGTGTAAGGTGTGGGCGCCAGACCTCTGCATTGGCTTTGCCCAAGTCTTCGACCTCGGCTACTCATAACAATATCCTTGAATTATGGTGGATAGGAAGATGGGCCCATGGGTGCCCTATGTGTGGTGGGCCCTGGGTTCATGTAGTTTAGATACTAGTTTTGTACAAATCTCTCAGGCCTTCTGCATCTCCTGTAAAATAGCTTCATTTCATTATACCCTTAGCCACAGTCATAATACTGGGCAAATTCTCACAAAGCCATTGCTGAAGAATCAATCTATGACAAATATCTTTAATTTTTGACATAATATTTTTTTTCAAATGTGGGACCAAAGGTCCAACGTAAGTTTTGTAAACCTGCAAATGCCAGAATGGCAGATCCTTTCATACAGAATTGGAAGATATCTGGGTCCAGTTGCTAATGTGCAAGTGGAGATATATCTGGGTTGTTATAATGTGTTGTCTGTGTTTCATTTGAATAGATTCCAGAGAAAGGTTATAATACTGAGCCTTACAATCCAGGGCTCAGGCAGTCTTAAGTTATCAGAATCAGAAGTATCAACAGAAAGTGATGTATTCGCTTGAAAAGTCAAATTACCATATGTACTGAGGCATTTGAGGAAGGTTTATGGAATTCCATTTGTATTTATGTGTGATCTCCACTTTGGATGACGGAAGCATCTTTCATAATTGCTTGCATTGTAGATTCTGTTTGAATGGGTTGTAAGAAATCAAATGAAATTTTATTCATGTCC

Ace file of the UniGene sp_v2.0_unigene2345 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative glycine-rich protein [Oryza sativa Japonica Group]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	65%
Blast2go	protein	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	response to osmotic stress	GO:0006970	Biological Process	73%
Blast2go	circadian regulation of gene expression	GO:0032922	Biological Process	73%
Blast2go	regulation of long-day photoperiodism, flowering	GO:0048586	Biological Process	73%
Blast2go	cold acclimation	GO:0009631	Biological Process	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%
Blast2go	plastid	GO:0009536	Cellular Component	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9RZ66

Fln msg: your sequence is shorter than subject: 701 - 1255

Fln protein: SSHGGEVAFAFRYGDVHLFSGSSFNLMTTTVPMVGVSVALPAFSSTSCCLASVWHDNSKDCTVLKILRILPPASQSSQGKGNAAAWERAIADRFWWSLSVGVDWWDAVGCAQSAAEDDIVAINRVIAVLDSDFHSLATIQHRQQYGPALDRIKCRLLEGTVAQDVRALVLDMQARLLLDMLGKGIESALVSPATLMVEPWQASSETLTQLGTDAMTVDPALVPIIQAFVDAVLDLASHFLTRLRRYASFCRTLATHVGTSTNPGSNRNMGASPTSGGASPSPGQGGPGGTTSNPGNIQMQAWVQGAIAKISGNTEGSPTTTPSSLNGHAPMLTLSVNTATFPGTPAVRLIGDCHFLHRLCQLLLFCLIFRRRQLPRFINTVQRNPDVQSGKPQAGFGGKSFEELNQAASRPSSAPSVVKNEEAQGVRTGQQIPGFKGLDENSSGRTMRLGNGNAGQGYTAEEVKVLFLVLVDLCKRTAPLEHNLPKSQVGVPNANISLHYIDGQYKVAPEVVEASLGPHMQTLPRPRGADAAGLLLRELELHPPAEDWHKRNMFGGPWSDLGDLQSSLDEQNTNTNIASSSGICDITTGKHSDDYEGVKGLWPRKRRFSERDAAFGLKTAVGMGAYLGLMGSRRDVITASWKTGLHGVWHKCVRCGRQTSALALPKSSTSATHNNILELWWIGRWAHGCPMCGGPWVHVV*

Protein Length: 702

Fln nts: TCGAGTCATGGAGGGGAGGTTGCTTTTGCTTTTCGGTATGGCGATGTTCATCTATTCTCTGGCAGTAGCTTTAATCTCATGACCACGACTGTCCCAATGGTTGGGGTTTCTGTTGCCCTACCAGCTTTCTCTTCTACTAGCTGTTGCCTGGCCTCTGTTTGGCATGATAACAGCAAGGATTGCACTGTACTGAAGATTCTGCGTATTCTACCTCCTGCTAGTCAAAGTAGTCAAGGGAAAGGTAATGCAGCTGCCTGGGAACGAGCTATAGCAGACAGATTTTGGTGGAGCCTCTCAGTTGGAGTTGATTGGTGGGATGCTGTTGGTTGTGCACAAAGCGCAGCGGAAGATGATATAGTGGCAATTAACAGGGTAATTGCAGTGCTGGATTCAGACTTCCATTCACTAGCTACAATCCAACATCGTCAACAATATGGGCCTGCTTTGGATAGAATAAAATGCAGACTACTTGAGGGTACAGTTGCCCAAGATGTTAGGGCACTTGTTCTAGATATGCAGGCAAGGTTGTTGCTTGACATGCTGGGAAAGGGCATTGAGTCTGCTCTCGTAAGTCCCGCAACTTTAATGGTTGAGCCTTGGCAGGCCTCTAGTGAGACTTTAACACAACTTGGAACTGATGCCATGACAGTTGATCCAGCTCTTGTTCCTATTATCCAGGCATTTGTTGATGCCGTTCTTGATTTGGCTTCCCATTTTCTCACACGTCTGCGGCGCTATGCAAGCTTTTGTCGTACATTAGCTACTCATGTTGGAACATCAACGAATCCAGGAAGCAATCGCAATATGGGTGCAAGTCCAACTTCTGGAGGGGCTTCTCCGTCTCCTGGCCAAGGAGGTCCAGGTGGAACAACAAGTAACCCTGGAAATATACAAATGCAAGCATGGGTCCAAGGTGCCATTGCCAAGATTAGCGGTAATACAGAAGGAAGTCCAACCACAACACCGAGTTCATTAAATGGGCATGCTCCTATGCTGACACTTAGTGTAAATACAGCAACATTTCCAGGAACACCTGCTGTGAGACTAATTGGAGATTGCCATTTCCTTCATAGGTTATGCCAATTGTTATTATTCTGTTTGATTTTCCGCAGAAGGCAGTTGCCCCGTTTCATTAATACAGTACAAAGGAACCCTGATGTGCAGTCAGGCAAGCCACAGGCAGGTTTCGGAGGGAAAAGCTTTGAAGAATTAAATCAAGCTGCTTCTAGGCCCTCTTCTGCACCATCAGTTGTTAAAAATGAAGAGGCACAAGGTGTCAGGACTGGACAACAGATTCCTGGGTTCAAAGGACTAGATGAAAATTCTAGTGGTCGGACTATGCGCTTAGGGAATGGAAATGCTGGTCAAGGTTACACAGCAGAAGAGGTGAAGGTTCTTTTTCTTGTATTGGTGGACCTCTGTAAAAGAACTGCACCGTTGGAACACAATTTACCCAAGTCACAAGTTGGGGTTCCCAATGCAAACATATCTCTGCATTACATAGACGGGCAGTATAAGGTTGCACCGGAGGTGGTAGAGGCATCTCTTGGACCTCACATGCAGACTTTGCCTCGACCACGGGGTGCGGATGCTGCTGGCTTGTTACTTCGTGAATTAGAACTTCACCCACCTGCAGAAGATTGGCATAAACGCAACATGTTTGGTGGACCTTGGTCTGATCTTGGAGATCTCCAATCATCCCTAGATGAACAGAATACCAACACAAACATAGCTTCTTCATCAGGCATATGTGACATTACAACAGGGAAACATTCTGATGATTATGAAGGTGTAAAAGGACTGTGGCCAAGAAAACGAAGATTTTCTGAGAGGGATGCAGCATTTGGTCTGAAGACAGCTGTAGGAATGGGAGCATACTTAGGACTTATGGGATCCCGAAGGGATGTCATTACTGCATCGTGGAAAACGGGATTACATGGTGTATGGCACAAGTGTGTAAGGTGTGGGCGCCAGACCTCTGCATTGGCTTTGCCCAAGTCTTCGACCTCGGCTACTCATAACAATATCCTTGAATTATGGTGGATAGGAAGATGGGCCCATGGGTGCCCTATGTGTGGTGGGCCCTGGGTTCATGTAGTTTAG___ATACTAGTTTTGTACAAATCTCTCAGGCCTTCTGCATCTCCTGTAAAATAGCTTCATTTCATTATACCCTTAGCCACAGTCATAATACTGGGCAAATTCTCACAAAGCCATTGCTGAAGAATCAATCTATGACAAATATCTTTAATTTTTGACATAATATTTTTTTTCAAATGTGGGACCAAAGGTCCAACGTAAGTTTTGTAAACCTGCAAATGCCAGAATGGCAGATCCTTTCATACAGAATTGGAAGATATCTGGGTCCAGTTGCTAATGTGCAAGTGGAGATATATCTGGGTTGTTATAATGTGTTGTCTGTGTTTCATTTGAATAGATTCCAGAGAAAGGTTATAATACTGAGCCTTACAATCCAGGGCTCAGGCAGTCTTAAGTTATCAGAATCAGAAGTATCAACAGAAAGTGATGTATTCGCTTGAAAAGTCAAATTACCATATGTACTGAGGCATTTGAGGAAGGTTTATGGAATTCCATTTGTATTTATGTGTGATCTCCACTTTGGATGACGGAAGCATCTTTCATAATTGCTTGCATTGTAGATTCTGTTTGAATGGGTTGTAAGAAATCAAATGAAATTTTATTCATGTCC

Fln Alignment:

Contig2345___SSHGGEVAFAFRYGDVHLFSGSSFNLMTTTVPMVGVSVALPAFSSTSCCLASVWHDNSKDCTVLKILRILPPASQSSQGKGNAAAWERAIADRFWWSLSVGVDWWDAVGCAQSAAEDDIVAINRVIAVLDSDFHSLATIQHRQQYGPALDRIKCRLLEGTVAQDVRALVLDMQARLLLDMLGKGIESALVSPATLMVEPWQASSETLTQLGTDAMTVDPALVPIIQAFVDAVLDLASHFLTRLRRYASFCRTLATHVGTSTNPGSNRNMXXXXXXXXXXXXXXXXXXXXXXXXXXNIQMQAWVQGAIAKISGNTEGSPTTTPSSLNGHAPMLTLSVNTATFPGTPAVRLIGDXXXXXXXXXXXXXXXXXXXXXLPRFINTVQRNPDVQSGKPQAGFGGKSFEELNQXXXXXXXXXSVVKNEEAQGVRTGQQIPGFKGLDENSSGRTMRLGNGNAGQGYTAEEVKVLFLVLVDLCKRTAPLEHNLPKSQVGVPNANISLHYIDGQYKVAPEVVEASLGPHMQTLPRPRGADAAGLLLRELELHPPAEDWHKRNMFGGPWSDLGDLQSSLDEQNTNTNIASSSGICDITTGKHSDDYEGVKGLWPRKRRFSERDAAFGLKTAVGMGAYLGLMGSRRDVITASWKTGLHGVWHKCVRCGRQTSALALPKSSTSATHNNILELWWIGRWAHGCPMCGGPWVHVV
B9RZ66______________SAHGGEIAIAFLRGGVHIFSGPNFTPVDSYQINVGSAIAAPAFSSTSCCSASVWHDTSKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDNIVSLNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPEPWQASGETLSGIDPEAMAVEPSLVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTA-GTGSNRSMVTSPTQSAASPATSQGGQNGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNATPNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRFIGVAQRSTDTNMQKPQSGAPGK-VEEANS--VSSKPAQAMVRSDEVQTARGGQLVPGGKGVEEGPAGRS-RLGYGNAGQGYTFEEVKVLFLILMDLCRRTAALAHPLPVSQVGSSNIQVRLHYINGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNMFGGPWSDPEDITSADD----TPRMSSYTDSLDFSSLENCDVYYGVNGLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTSAFASP-GATNPPNQNDREAWWISRWAYGCPMCGGTWVRVV

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
1238		57		42	1.0
1364			87	12	0.992554
1365		83		16	0.994512
1456	25	75			0.996473
1457	75			25	0.996473
1458	75		25		0.996473
1459		75		25	0.996473
1703	88		11		0.923564
1752	10		90		0.90298
1796		12		87	0.992554
1797		12		87	0.992554
1798	12		87		0.992554
1799			87	12	0.992554
1824		83		16	0.994512
1922	66		33		1.0
1963	75		25		1.0
2610	33		16		1.0
2611			50	50	1.0
2617		50	50		1.0
2622		33		66	1.0
2623	50	50			1.0
2624	50		50		1.0
2625	50			50	1.0
2626	50		50		1.0
2627	50		50		1.0
2632		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain