SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2340

Length: 1785 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene2340 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative beta-glucosidase 41 [Arabidopsis thaliana] sp\|Q9FIU7.2\|BGL41_ARATH RecName: Full=Putative beta-glucosidase 41; Short=AtBGLU41; Flags: Precursor gb\|AED96511.1\| putative beta-glucosidase 41 [Arabidopsis thaliana]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	beta-glucosidase 41	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	79%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	79%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	79%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	79%
Blast2go	Glycosaminoglycan degradation	00531	79%
Blast2go	Metabolic pathways	01100	79%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	79%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	79%
Blast2go	cation binding	GO:0043169	Molecular Function	79%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	79%
Blast2go	apoplast	GO:0048046	Cellular Component	79%
Blast2go	chloroplast	GO:0009507	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 1, beta-glucosidase	IPR017736	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT85

Fln msg: your sequence is shorter than subject: 475 - 508

Fln protein: VNEGNRTDSIWDTFTHRPGRIMDFSNGDIAVDQYHRFKEDINLMVDMGMDAYRFSISWSRLFLNGSQDINKAGLDHYNALIDTLLAKGIDPYVTLYHWDLPQALEDAYDGWLNPQIIADFARYAEACFQAFGDRVKHWITFNEPRGISIHGYDIGIQAPGRCSILGHLLCKAGNSSTEPYIVAHNLLLSHAAVVDIYRQQFKQKQGGSIGITLDSLWFEPITDLSEDQDAAQRALDFQLGWFMDPLYFGDYPASMRQLVGDRLPVFSNDQSKLLRGSFDFVGINHYTTLYARNDRLQIRKRLLNDAYADSAVITTSFRKGVMIGERGASRWLYVVPWGIRSLMIYIKQRYDNPPIIITENGIDDPNSPLISLDKALQDTKRIDYHRDYLSNLSVAIRNDGCDVRGYFVWSLLDNWEWNSGFTVRFGLYFVDYKGNLTRYPKASADWFKSFLPKSKSKSTASYLLDHTTQYRSDI*

Protein Length: 476

Fln nts: TGTGAATGAAGGAAACCGGACAGATAGCATCTGGGACACGTTTACGCATAGACCAGGGAGAATCATGGATTTTAGCAATGGAGATATAGCTGTTGATCAGTATCATCGTTTTAAGGAAGACATCAATCTTATGGTTGATATGGGAATGGACGCGTACAGATTCTCAATCTCCTGGTCACGCCTTTTTCTCAATGGCAGTCAAGATATCAACAAGGCTGGTTTGGATCACTACAACGCCTTGATAGATACTCTCCTTGCCAAAGGAATTGATCCATATGTTACTTTATACCATTGGGACCTGCCACAAGCTCTCGAAGATGCTTATGATGGTTGGTTGAATCCACAGATCATTGCTGACTTTGCCAGGTACGCAGAGGCGTGTTTCCAAGCTTTTGGGGACAGAGTGAAACATTGGATTACTTTCAATGAACCCCGTGGAATTTCAATCCATGGTTATGACATTGGTATACAAGCTCCAGGAAGATGTTCCATTCTCGGTCACCTTCTCTGCAAAGCCGGGAATTCTTCCACGGAACCGTATATCGTGGCTCACAACCTGCTTCTGTCACATGCTGCTGTAGTCGATATCTACAGGCAACAATTCAAGCAGAAGCAAGGAGGCTCAATTGGCATCACTCTGGATTCCCTCTGGTTTGAACCTATAACTGACTTGTCCGAAGACCAGGATGCTGCTCAGAGGGCCCTCGATTTCCAGCTTGGATGGTTCATGGATCCCCTTTATTTTGGAGATTATCCAGCATCCATGCGACAGTTGGTAGGTGACAGATTGCCAGTATTTTCCAACGACCAATCCAAATTGCTCAGAGGTTCTTTTGATTTTGTGGGCATCAATCATTACACAACACTATATGCCCGAAATGACAGACTTCAAATTCGCAAGAGACTGCTGAACGACGCATACGCAGACTCTGCCGTCATCACAACCTCTTTCCGGAAAGGAGTTATGATCGGAGAACGGGGTGCCTCACGTTGGCTCTATGTCGTTCCATGGGGAATCCGTAGTTTGATGATATACATAAAACAAAGATACGACAACCCACCAATTATTATCACAGAGAATGGCATTGATGATCCGAATAGTCCTTTAATATCCTTGGACAAAGCACTGCAGGACACCAAGCGAATAGATTACCATAGGGACTACCTTTCAAATCTCTCAGTTGCCATCAGGAACGATGGATGCGACGTGCGAGGTTACTTTGTGTGGTCACTGCTGGACAATTGGGAATGGAATTCGGGATTCACAGTGAGATTTGGGTTATATTTCGTAGATTACAAGGGCAACCTCACGAGATATCCAAAAGCTTCTGCAGATTGGTTCAAAAGCTTTCTGCCAAAATCAAAATCAAAATCAACCGCCTCTTACCTGCTGGACCACACGACACAATATAGATCCGATATATAA___TTAGATATATTTATTCATTCTGTAAAATCGCAAATTCAATTATTTTGAAAGCGCGCCAAAGCGATTGGATTGATTCAACTGTATTTACTGATTGTATGTATTGTAAAAATTCAAATTTGTTGGACAAGATACACAGAAATTAGATGTGTGTATTGTAAAAATTGAAATTTATTGGAGGAGATCCAGAGAAATTAGATATAGACGAGCGCTGTCCTCTCACCTAAGCAGATGCTAGAAACAGGAAGCATGTGTTTGTCGTGAGAGAGAGAGGCCTCAATAATTCACTGAATCTTGACGTGTACTGTAATGCAAGCAATGACGATGTACTCAAAGGACAAAATTTTCGTATTCAAAATTAC

Fln Alignment:

Contig2340___EGNRTDSIWDTFTHRPGRIMDFSNGDIAVDQYHRFKEDINLMVDMGMDAYRFSISWSRLFLNG-SQDINKAGLDHYNALIDTLLAKGIDPYVTLYHWDLPQALEDAYDGWLNPQIIADFARYAEACFQAFGDRVKHWITFNEPRGISIHGYDIGIQAPGRCSILGHLLCKAGNSSTEPYIVAHNLLLSHAAVVDIYRQQFKQKQGGSIGITLDSLWFEPITDLSEDQDAAQRALDFQLGWFMDPLYFGDYPASMRQLVGDRLPVFSNDQSKLLRGSFDFVGINHYTTLYARNDRLQIRKRLLNDAYADSAVITTSFRKGVMIGERGASRWLYVVPWGIRSLMIYIKQRYDNPPIIITENGIDDPNSPLISLDKALQDTKRIDYHRDYLSNLSVAIRNDGCDVRGYFVWSLLDNWEWNSGFTVRFGLYFVDYKGNLTRYPKASADW
C0PT85______________EGGRGPSIWDAFSYTPGKIFDGTNGDVAVDQYHRYKEDVDVIAKMGFDVYRFSISWSRIFPDGFGAEVNKEGIAYYNNLIDTLLQKGIRSSVTLYHWDLPQKLHESMGGWLNREIVNYFAQYAETCFTAIGDRVKHWITLNEPLQTAVNGYATGIFAPGRCS--DRSKSPVGDSSTEPYLVAHNQLLAHAVAVDIYRKKFQDKQGGVIGITVDGEGSEPFTDAEGDKEAAQRRLEFQFGWFLDPLYFGDYPAIMRKKVGDRLPQFSPDEVALLLGSVDFVGLNHYTTRYV----IPSFQSSEDEFFVDQDIHRIAEWEGNTIGERAASEWLYIVPWGFRKVLKWLTERYNRPPIYVTENGMDDEDSEITLLDQALNDTKRVNYFKGYLKSLAKAIR-EGVDVRGYFAWSLIDNFEWSQGYTKRFGLVFVDYKNELKRHPKSSAHW

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1557	22		77		0.999999
1617		85		14	0.993533

SSRs (tot: 1)

Start position	End position	Sequence	Length
410	430	TTGATT TTGATT TTGATT TTG	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain