SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2339

Length: 1405 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2339

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Arabidopsis thaliana] gb\|AAO42042.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63935.1\| unknown protein [Arabidopsis thaliana] gb\|AED97685.1\| Mitochondrial import	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	mitochondrial import inner membrane translocase subunit tim17 tim22 tim23 family protein	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	protein transport	GO:0015031	Biological Process	75%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	75%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	75%
Blast2go	integral to membrane	GO:0016021	Cellular Component	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A882

Fln msg:

Fln protein: MAAKDDSGEVVQKDTARKKASIDWGATTIIGVIAGLLYGGSREALASASKDAEVMLKLGSTPDKREQYRVMRDAMEKRFIRVARGSILGGAKLGLFTACFSGLQHFLAEKRGVNDAFNIAGAGSATAAAFGLLLPGSLRWRARNVLAGSVLGAAVGLPLGWVQVRLVESAKERIASMPLNVEDTENVKKSRVAATIDRLEETFTK*

Protein Length: 207

Fln nts: ATGGGGATTGTCGAGTTGAGTCTGTAACCTAAAACGAGATTTACTTATAAATTGGTGTTAAATCTCGGTACTTAATGTTGTCCATTTATATCGAAAATTTTTATGCATGCAAGCGCAATTAATGTGATATGAAGTTACAGGGGTCAATTTGACAGTTCGTCGCCGCACCTGGATGCTATGCAAATGCAATCGCTGTCAAACAAACTTCAACCCATGTAAGGAGGATTCCTGTGTTTACTACGAATTGCCCAGACAGATTATCTGCAAAATTAGGCCAATTCTCTGATCTCCAATAGCTTGACTGCTCTTCCGGGGCTTCAATTATTTGTTATAAGTTCGTTCGAAATGGTATGAATTAGCAAGGATAAGGAATGTGTGAAGGACTCATTTTTAATCGGAAAGAGTGTATCAGTGTCTATAGAAGGTTGCTTCAACAAAGATAATCAAGT_-_ATGGCAGCAAAAGATGATTCTGGAGAAGTTGTACAGAAGGACACAGCAAGGAAAAAGGCGAGTATAGACTGGGGAGCCACAACAATAATAGGTGTTATTGCTGGGTTGCTATATGGGGGCAGCAGAGAAGCACTTGCATCGGCTAGCAAAGATGCAGAGGTAATGTTAAAACTTGGAAGCACACCTGACAAGAGAGAACAGTACAGAGTGATGAGGGATGCCATGGAGAAGAGGTTCATAAGAGTGGCCCGTGGATCTATTTTAGGAGGGGCAAAGCTTGGTTTATTTACCGCATGTTTTAGTGGTCTGCAACATTTTCTTGCAGAAAAACGAGGTGTAAATGATGCATTTAATATTGCTGGAGCTGGTTCTGCAACTGCTGCAGCATTTGGACTCCTATTGCCTGGATCCCTCCGTTGGCGTGCTAGAAATGTGCTGGCAGGTTCAGTTCTAGGTGCAGCAGTAGGCCTGCCACTTGGTTGGGTTCAAGTTCGACTTGTTGAGAGTGCAAAAGAAAGGATTGCTTCTATGCCACTGAATGTGGAAGACACTGAGAATGTCAAGAAAAGTAGAGTTGCTGCCACAATTGATAGACTCGAGGAAACTTTCACTAAGTAG___GCTATCACTGAATCAGTCGTGCCAAAATTTGTTAGAGCTGGTTCCTATAATGTTCCATGAAATCTTTTTATGGACTTATATGCCCTAGTCACCATCAAAGATGTATACTGAAATCTCAGTTTATCACCTTCTATGTTACATTTACACACAGTAACTCTGAACGGATTTATTGCATACAATAATTCACCTGTATTGAGGGTCGTTTTCCACCTCATAATAACTGTTCCTTTCTTAACGTAAACAAGCTCCGTTTGCTATTTGTTGATATATATAGGATTTATTGCAGACGGTAATTCAGCTGTATTTAGGGTTGTTTTCCACCTCATAATAACTGTTCC

Fln Alignment:

Contig2339___MAAKDDSGEVVQKDTARKKASIDWGATTIIGVIAGLLYGGSREALASASKDAEVMLKLGSTPDKREQYRVMRDAMEKRFIRVARGSILGGAKLGLFTACFSGLQHFLAEKRGVNDAFNIXXXXXXXXXXXXXXXPGSLRWRARNVLAGSVLGAAVGLPLGWVQVRLVESAKERIASMPLNVEDTENVKKSRVAATIDRLEETFTK
D5A882______________MAAIDDSVEVVQKDAARKKANIDWGATTVIGVIAGLLYGGSREALASASKDAEVMLKLGSTPDKREQYRVMRDAMEKRFIRVARGSILGGAKLGLFTACFSGLQHLLAERRGVHDAFNIAGAGSATAAAFGLLLPGSLRWRARNVLVGSVLGAAVGLPLGWVQVRLVESAKERIASMPPNAEDTENVKKSRVAATIDRLEETFTK

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
415			75	25	0.996473
554		85		14	0.993533
601	85		14		0.993533
602	85		14		0.993533
905			30	70	1.0
906	70			30	1.0
907		30	70		1.0
913		30	70		1.0
914		90		10	0.90298
915	70			30	1.0
925		70		30	1.0
966	81			18	0.999994
1227	14			85	0.993533
1228	14	85			0.993533
1231	88		11		0.923564
1232	85		14		0.993533
1309			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain