SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2331

Length: 1373 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2331

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription initiation factor TFIID, subunit TAF1 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TKZ9_PHYPA	-	-	55%
FL-Next	sp=Transcription initiation factor TFIID subunit 1; Oryza sativa subsp. japonica (Rice).	-	-	67%
Blast2go	transcription initiation factor subunit taf1	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone acetyltransferase.	EC:2.3.1.48	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	73%
Blast2go	DNA binding	GO:0003677	Molecular Function	73%
Blast2go	histone acetyltransferase activity	GO:0004402	Molecular Function	73%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	TAFII-230 TBP-binding	IPR009067	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q67W65

Fln msg: Distance to subject end: 470 aas, your sequence is shorter than subject: 457 - 1810

Fln protein: LVYIYREFRATEKPGCRPHVRADELMAQFPNHSESFLRKRLKHCADLQKGRNGEMLWLMKRTFRIPSEEELRRMVTPENVCAYESMLAGLHHLKRLGINRLTATAGLASAMSQLPDEAIALAAASHIERELQITSWNLSCNFVASTLQGRECIERLEITGIGDPSGTGTWF*LSSSCSKATNIKCFG*KKAAAARGGSAVTGTDADLRRLSMDAAREVLLKFNVDEEQIEKMTRWHRIAMVRKLSSEQAASGVKVDATALNKFARGQRMSFLQLQQQAREKCQEIWDRQFQSLSAADEALESDAEANSDLDSFAGDLENLLDAEEGDDGEIGDSDTKREKRETIRGFGARRRATQAQAEEEIEDEAAEAAELCRMLMDDDEAKEQKKKKVGASAKEKNNHVMQDLQGDLILSNKDDHGKKTKRVFKRIIRTKKADGTVTSREDIITDPKEVAKYFAK

Protein Length: 458

Fln nts: TTGGTGTACATATATCGTGAATTTCGTGCAACAGAGAAGCCTGGGTGTCGTCCTCATGTTCGTGCTGATGAGTTGATGGCTCAGTTTCCCAATCATTCAGAGTCATTTCTCAGGAAGCGGCTGAAACACTGTGCAGATCTTCAGAAGGGCCGCAATGGTGAGATGTTGTGGCTTATGAAACGGACTTTCCGCATACCATCAGAGGAAGAACTGCGGAGAATGGTGACACCTGAAAATGTTTGTGCATATGAAAGCATGCTAGCTGGTTTGCATCATCTTAAGCGCCTTGGAATCAACAGACTCACTGCGACGGCTGGCCTTGCTTCAGCTATGAGTCAACTTCCAGATGAAGCTATTGCTCTTGCAGCAGCTTCCCATATTGAGAGGGAGCTGCAGATAACATCATGGAATCTGAGCTGCAATTTTGTTGCCTCTACTTTGCAGGGTCGTGAATGTATTGAGCGCCTGGAGATTACAGGGATTGGAGATCCATCAGGTACGGGGACTTGGTTTTAGTTATCTTCGAGTTGCTCCAAAGCCACCAATATCAAGTGCTTTGGTTAAAAAAAGGCAGCTGCTGCACGTGGTGGTTCTGCAGTTACTGGTACTGATGCTGATCTCCGAAGGTTGAGTATGGATGCAGCAAGGGAGGTGTTGCTGAAGTTTAATGTTGATGAGGAACAAATTGAAAAGATGACTAGGTGGCATCGGATTGCAATGGTGAGAAAGCTTTCAAGTGAGCAAGCTGCTTCAGGTGTTAAAGTAGATGCAACAGCATTGAATAAGTTTGCACGGGGACAACGCATGTCATTTCTTCAGCTTCAGCAACAGGCACGAGAAAAATGTCAGGAAATCTGGGATCGTCAGTTTCAGAGTCTTTCAGCTGCTGATGAGGCACTTGAAAGTGATGCTGAAGCAAATAGTGATCTAGACTCCTTTGCTGGAGATTTAGAGAATTTACTGGATGCTGAAGAGGGTGACGATGGTGAAATTGGTGATTCTGACACGAAAAGAGAGAAAAGAGAAACTATTAGAGGATTTGGTGCACGAAGACGAGCAACTCAAGCCCAAGCAGAGGAGGAAATTGAAGATGAAGCAGCTGAAGCAGCAGAACTTTGTAGGATGCTCATGGATGATGATGAAGCAAAAGAGCAGAAGAAGAAAAAGGTTGGAGCGAGTGCAAAGGAGAAAAACAACCATGTCATGCAAGACCTGCAAGGAGATTTGATACTTAGCAATAAGGATGATCATGGAAAAAAGACAAAGAGAGTATTTAAGCGCATTATACGTACAAAGAAGGCTGATGGCACTGTGACCTCAAGGGAGGATATCATCACTGATCCTAAAGAGGTTGCAAAATATTTTGCAAAAAA

Fln Alignment:

Contig2331___LVYIYREFRATEKPGCRPHVRADELMAQFPNHSESFLRKRLKHCADLQKGRNGEMLWLMKRTFRIPSEEELRRMVTPENVCAYESMLAGLHHLKRLGINRLTATAGLASAMSQLPDEAIALAAASHIERELQITSWNLSCNFVASTLQGRECIERLEITGIGDPSGTGTWF*LSSSCSKATNIKCFGXXXXXXXRGGSAVTGTDADLRRLSMDAAREVLLKFNVDEEQIEKMTRWHRIAMVRKLSSEQAASGVKVDATALNKFARGQRMSFLQLQQQAREKCQEIWDRQFQ-XXXXXXXXXXXXXXXNSDLDSFA
Q67W65______________LVYVYREFRAREKPGIIPQIRADELPIQ-PPITEAIVRKRLKHCADLRKGPKGHLFYIQRPDFRIPSEEELRRLLTPENVCCYESMQAGQYRLKHLGIEKLTQPVGLASAMNQLPDEAIELAAAAHIERELQITSWNLTSNFVACTNQDKENIERLEITGVGDPSGRGLGFSYVRVTPKAP-VSNSTHKKKSAAAKGTTVTGTDADLRRLSMDAARELLLKFGVPEEQIDKLTRWHRIAMVRKLSSEQAASGVTMDEIPVSKFARGQRMSFLQLQQQTKEKCQEIWDRQIQSLSAMDGNENGSDTEANSDLDSFA

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
408			63	36	1.0
495		87	12		0.992554
496	87		12		0.992554
724	14			85	0.993533
725		14	85		0.993533
727			85	14	0.993533
728	85			14	0.993533
860	25		75		0.996473
861		25	75		0.996473
864		66		33	0.997452
900	33	66			0.997452
1020	25		75		0.996473
1071	20	80			0.995493
1072		80		20	0.995493
1073	80		20		0.995493
1074	80		20		0.995493
1165			75	25	0.996473
1166	66			33	0.997452
1263	33		66		1.0
1285		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain