SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2324

Length: 2563 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene2324
ATGGTATCGACATTTAAATAAAATCATTTGGATGGAATAGGGCCTTCATCATTTGTGAATTCAAAAGATATCAGGAGGATTGCAGGGCGATAGGCGGGAATCAGTAGTAGGGTTGAGAACATGGCGGAGGCTCCTGTTCCATCCCTGCGAGTCCAGCTCTATCAGCACCAGCCTTCTCGTGAAAAAACTCCTGTCCCCGTTTCTAGCCATGCCGACAGAGACCGTGTACAGGAGGTATTCAGAGATGCATTATCAAAGGCAGACCATCCATCAACATTTGCTGTTCAGGCAATGCAAGAGGCTGTAAAACCACAGAAACAAACTGTGCTTGTCCAAGATGAAAATCAATTATTAGAAAATGGTTTGCGTACTTTGCTCCAGGAGCTGGTGGCTGCCGCAGTTGAGTCTGGAGATCCTGCAATGCAACATGGAGAATCCATTGCGGATGGAGAAAATAATTGTGGACTTATCCCCAGGCTTCTTGATATTGTCCTTTATCTTTGTGAACGAGGTCATGTGGAAGGTGGCATGATATTTCAGTTACTAGAAGATTTGACAGAAATGGCAACGATGAAAGACTGCAAAGAGGTATTTGGGTATATTGAAAGCAAACAGGATATTTTGGGAAAGCAAGAGCTGTTTGGGAGAGGGAAGCTTGTCATGCTCAGAACATGCAACCAGCTTCTACGGCGCCTGTCCAAGGCAAATGATGTCATCTTCTGTGGTCGCATTCTTATGTTTCTAGCACATTTTTTCCCATTGTCAGAGCGTTCAGCTGTTAACATAAAGGGAATTTTCAACACATCTAATGAGACAAAGTATAAAAAAGAACATCCTCCTGATGGAGTTTCTATTGACTTCAATTTTTACAAGACATTCTGGAGTCTACAGGAATATTTTTGCAATCCTGCTCCTATGATTCACACTCTTACCAAGTGGCAAAACTTCATTGCAAGTTTAGCTATTGTGCTGGATACTTTTGAAGCTCAACCCCTTGGTGATGATGATGCAAATGCAAGTGATCTTGACGAAGGCGAGGCTGCAGCTTTCAGCATCAAGTATCTGACGAGTAGTAAACTGATGAGTCTAGAGTTAAAAGATCCTAGCTTTCGACGTCATGTTCTTGTGCAATGCTTAATTATCTTTGACTACTTTAAGTTCCCAGGAAAAGGTGACAAGGATGGTCCAAAGGAAAGCATGAGAGAGGAAATCAAGGCTTATGAGGAGCGTGTAAAGAAGCATCTTGAAATGACACCACCGAAAGGAAGAGAATTTCTCAGTAGCATTGAACACATACTAGAACGTGAAAAAAACTGGGTTTGGTGGAAGCGTGATGGATGTTTGCCATTTGAAAAGCAAGTATCAGAACGGAAAACAACACAAGATGGAGTGAAAAAACGCAGGCCAAGGTGGAGGTTGGGAAACAAGGAACTTGCACAATTATGGAAATGGTCAGACCAGAATCCGAATGCGCTAACAGATGCACAGCGAGTCAAGATGCCATCTGTTACAGATTACTGGAAAGCTCTTGCTGATGATCTGGATCCTTCTGCTGGAATTGAACCGGAGTATCACCACAGAAATAACCGTGTTTACTGTTGGAAAGGCCTACGCTTTTCAGCACGGCAAGACCTGGAGGGGTTTTCCAGGTTCACAGAACATGGTATTGAAGGTGTTGTTCCACCTGAACTACTTCAGCCTGAAATTCGAAACAAGTACCATGGAAAAACTTCTGAGAAATCTAGACGCACTGCTAAAAAGGAAGAGGAAACAAAAGGAGCTGTTACTCAAACTGAAGAAAATCAGGCAAATGGTAAGGTTGCAGAGCTTGATGATGGTGGTCCAAATCAAGAGATAGAGGATGCACCAACTCCAGTTGATGTAGATGCCTTAGGCACATCAACTCAGAGTGGTGCTCCTACACCTGATGAGAGTCAGAAACAGAGCTCTGACATGGAAGCTGGTCAAGAAGGACTGCACTCAGAAGGCGGTAACTCACCTGATCCAAACAGTGCAGACATGGAAGAAGGCCTTATGAAGGATTCAAGTCCTCAGGATAATTCTGTCTTATCAAATGAAGGATCAAGCCCCAAGGCAATTGAGAATAAAACATATACCCGGAAGCGTCCCCTACCAGACTCCTGATTATTGGAGTCAAAGTGAATTATTATTGCTTTAATCAGACCCTTAAATACTTGGTAACATCCCGCTATCATTTCTATATCTGTAATGATTAGTATGACTTCCAGAAGTCACGTGAGTAAGCATTTTTTAAATATATTGTTACCAATCATGGGAATTATTAATCTAGGATGTATGGTATGTTTGGACTATATCAGAACCTATGTATTTTAGGACATTATAGAGTATTCCAGCACTGCCATGATTGTATACATTTTTAATCACAGTCAAAAAATGCAAGTTCTAAAGGTGCCATACTCGTGTATGATGATAAGCACATGATGATGGTTCACTTCAAATGTGACAACCTTTATACCCCATGTTAAACATTAGCACTACAGAGAAGAAAGCAGCATGATTACTAATTACAAAGGAGGTTATT

Ace file of the UniGene sp_v2.0_unigene2324 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	THO complex subunit 1 [Arabidopsis thaliana] gb\|AAL11560.1\|AF424566_1 AT5g09860/MYH9_7 [Arabidopsis thaliana] gb\|AAL16253.1\|AF428323_1 AT5g09860/MYH9_7 [Arabidopsis thaliana] gb\|AED91456.1\| THO complex subunit 1 [Arabidopsis thaliana]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	69%
Blast2go	tho complex subunit 1-like	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	production of ta-siRNAs involved in RNA interference	GO:0010267	Biological Process	0.0	78%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Sulfotransferase domain	IPR000863	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HVB5

Fln msg: your sequence is longer than subject: 675 - 601

Fln protein: MAEAPVPSLRVQLYQHQPSREKTPVPVSSHADRDRVQEVFRDALSKADHPSTFAVQAMQEAVKPQKQTVLVQDENQLLENGLRTLLQELVAAAVESGDPAMQHGESIADGENNCGLIPRLLDIVLYLCERGHVEGGMIFQLLEDLTEMATMKDCKEVFGYIESKQDILGKQELFGRGKLVMLRTCNQLLRRLSKANDVIFCGRILMFLAHFFPLSERSAVNIKGIFNTSNETKYKKEHPPDGVSIDFNFYKTFWSLQEYFCNPAPMIHTLTKWQNFIASLAIVLDTFEAQPLGDDDANASDLDEGEAAAFSIKYLTSSKLMSLELKDPSFRRHVLVQCLIIFDYFKFPGKGDKDGPKESMREEIKAYEERVKKHLEMTPPKGREFLSSIEHILEREKNWVWWKRDGCLPFEKQVSERKTTQDGVKKRRPRWRLGNKELAQLWKWSDQNPNALTDAQRVKMPSVTDYWKALADDLDPSAGIEPEYHHRNNRVYCWKGLRFSARQDLEGFSRFTEHGIEGVVPPELLQPEIRNKYHGKTSEKSRRTAKKEEETKGAVTQTEENQANGKVAELDDGGPNQEIEDAPTPVDVDALGTSTQSGAPTPDESQKQSSDMEAGQEGLHSEGGNSPDPNSADMEEGLMKDSSPQDNSVLSNEGSSPKAIENKTYTRKRPLPDS*

Protein Length: 676

Fln nts: ATGGTATCGACATTTAAATAAAATCATTTGGATGGAATAGGGCCTTCATCATTTGTGAATTCAAAAGATATCAGGAGGATTGCAGGGCGATAGGCGGGAATCAGTAGTAGGGTTGAGAAC_-_ATGGCGGAGGCTCCTGTTCCATCCCTGCGAGTCCAGCTCTATCAGCACCAGCCTTCTCGTGAAAAAACTCCTGTCCCCGTTTCTAGCCATGCCGACAGAGACCGTGTACAGGAGGTATTCAGAGATGCATTATCAAAGGCAGACCATCCATCAACATTTGCTGTTCAGGCAATGCAAGAGGCTGTAAAACCACAGAAACAAACTGTGCTTGTCCAAGATGAAAATCAATTATTAGAAAATGGTTTGCGTACTTTGCTCCAGGAGCTGGTGGCTGCCGCAGTTGAGTCTGGAGATCCTGCAATGCAACATGGAGAATCCATTGCGGATGGAGAAAATAATTGTGGACTTATCCCCAGGCTTCTTGATATTGTCCTTTATCTTTGTGAACGAGGTCATGTGGAAGGTGGCATGATATTTCAGTTACTAGAAGATTTGACAGAAATGGCAACGATGAAAGACTGCAAAGAGGTATTTGGGTATATTGAAAGCAAACAGGATATTTTGGGAAAGCAAGAGCTGTTTGGGAGAGGGAAGCTTGTCATGCTCAGAACATGCAACCAGCTTCTACGGCGCCTGTCCAAGGCAAATGATGTCATCTTCTGTGGTCGCATTCTTATGTTTCTAGCACATTTTTTCCCATTGTCAGAGCGTTCAGCTGTTAACATAAAGGGAATTTTCAACACATCTAATGAGACAAAGTATAAAAAAGAACATCCTCCTGATGGAGTTTCTATTGACTTCAATTTTTACAAGACATTCTGGAGTCTACAGGAATATTTTTGCAATCCTGCTCCTATGATTCACACTCTTACCAAGTGGCAAAACTTCATTGCAAGTTTAGCTATTGTGCTGGATACTTTTGAAGCTCAACCCCTTGGTGATGATGATGCAAATGCAAGTGATCTTGACGAAGGCGAGGCTGCAGCTTTCAGCATCAAGTATCTGACGAGTAGTAAACTGATGAGTCTAGAGTTAAAAGATCCTAGCTTTCGACGTCATGTTCTTGTGCAATGCTTAATTATCTTTGACTACTTTAAGTTCCCAGGAAAAGGTGACAAGGATGGTCCAAAGGAAAGCATGAGAGAGGAAATCAAGGCTTATGAGGAGCGTGTAAAGAAGCATCTTGAAATGACACCACCGAAAGGAAGAGAATTTCTCAGTAGCATTGAACACATACTAGAACGTGAAAAAAACTGGGTTTGGTGGAAGCGTGATGGATGTTTGCCATTTGAAAAGCAAGTATCAGAACGGAAAACAACACAAGATGGAGTGAAAAAACGCAGGCCAAGGTGGAGGTTGGGAAACAAGGAACTTGCACAATTATGGAAATGGTCAGACCAGAATCCGAATGCGCTAACAGATGCACAGCGAGTCAAGATGCCATCTGTTACAGATTACTGGAAAGCTCTTGCTGATGATCTGGATCCTTCTGCTGGAATTGAACCGGAGTATCACCACAGAAATAACCGTGTTTACTGTTGGAAAGGCCTACGCTTTTCAGCACGGCAAGACCTGGAGGGGTTTTCCAGGTTCACAGAACATGGTATTGAAGGTGTTGTTCCACCTGAACTACTTCAGCCTGAAATTCGAAACAAGTACCATGGAAAAACTTCTGAGAAATCTAGACGCACTGCTAAAAAGGAAGAGGAAACAAAAGGAGCTGTTACTCAAACTGAAGAAAATCAGGCAAATGGTAAGGTTGCAGAGCTTGATGATGGTGGTCCAAATCAAGAGATAGAGGATGCACCAACTCCAGTTGATGTAGATGCCTTAGGCACATCAACTCAGAGTGGTGCTCCTACACCTGATGAGAGTCAGAAACAGAGCTCTGACATGGAAGCTGGTCAAGAAGGACTGCACTCAGAAGGCGGTAACTCACCTGATCCAAACAGTGCAGACATGGAAGAAGGCCTTATGAAGGATTCAAGTCCTCAGGATAATTCTGTCTTATCAAATGAAGGATCAAGCCCCAAGGCAATTGAGAATAAAACATATACCCGGAAGCGTCCCCTACCAGACTCCTGA___TTATTGGAGTCAAAGTGAATTATTATTGCTTTAATCAGACCCTTAAATACTTGGTAACATCCCGCTATCATTTCTATATCTGTAATGATTAGTATGACTTCCAGAAGTCACGTGAGTAAGCATTTTTTAAATATATTGTTACCAATCATGGGAATTATTAATCTAGGATGTATGGTATGTTTGGACTATATCAGAACCTATGTATTTTAGGACATTATAGAGTATTCCAGCACTGCCATGATTGTATACATTTTTAATCACAGTCAAAAAATGCAAGTTCTAAAGGTGCCATACTCGTGTATGATGATAAGCACATGATGATGGTTCACTTCAAATGTGACAACCTTTATACCCCATGTTAAACATTAGCACTACAGAGAAGAAAGCAGCATGATTACTAATTACAAAGGAGGTTATT

Fln Alignment:

Contig2324___EVFRDALSKADHPSTFAVQAMQEAVKPQKQTVLVQDENQLLENGLRTLLQELVAAAVESGDPAMQHGESIADGENNCGLIPRLLDIVLYLCERGHVEGGMIFQLLEDLTEMATMKDCKEVFGYIESKQDILGKQELFGRGKLVMLRTCNQLLRRLSKANDVIFCGRILMFLAHFFPLSERSAVNIKGIFNTSNETKYKKEHPPDGVSIDFNFYKTFWSLQEYFCNPAPMIHTLTKWQNFIASLAIVLDTFEAQPLGDDDANASDLDEGEAAAFSIKYLTSSKLMSLELKDPSFRRHVLVQCLIIXXXXXXXXXXXXXXXKESMREEIKAYEERVKKHLEMTPPKGREFLSSIEHILEREKNWVWWKRDGCLPFEKQVSERKTTQDGVKKRRPRWRLGNKELAQLWKWSDQNPNALTDAQRVKMPSVTDYWKALADDLDPSAGIEPEYHHRNNRVYCWKGLRFSARQDLEGFSRFTEHGIEGVVPPELLQPEIRNKYHGKTSEKSRRTAKKEEETKGAVTQTEENQANGKVAELDDGGPNQEIEDAPTPVDVDALGTSTQSGAPTPDESQKQSSDMEAGQEGLHSEGGNSPDPNSADME
F6HVB5______________EIFKQALLKPGPPESFALQVVQEAIKPQKQTKLAQDENQLLENILRKLLQELVSCAVQSGEKIMQYGQSIDDEEAIQSQIPRLLDIVLYLCEKEHVEGGMIFQLLEDLTEMSTMRNCKDIFAYIESKQDILGKQELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSERSAVNIKGVFNTSNETKYEKD-APEGISIDFNFYKTFWSLQEHFCNPASISLAPTKWQKFTSNLMVVLNTFEAQPLSDEEGNANNLEE-EAATFSIKYLTSSKLMGLELKDPSFRRHILVQCLILFDYLKAPGKNDKDLPSDSMKEEIKSCEERVKKLLEMTPPKGKEFLHNIEHILEREKNWVWWKRDGCPPFERQPIEKKAVQDGAKKRRPRWRMGNKELSQLWKWADQNPNALTDPQRARTPAVSEYWKPLAEDMDLSAGIEAEYHHKNNRVYCWKGLRFAARQDLDGFSRFTEYGIEGVVPMELLPSDVRSKYQAKPSDRSKRA--KKEETKGAAQQAEENQIATPASEIDGEGTRVDLEASAAPMDTDVTATT-----PTADENQKQSSDTDAGQEAGQSEADAEAEAGMIDGE

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
1755	62	37			1.0
1777		66		33	1.0
1793	16		83		0.994512
1794	83	16			0.994512
1796		83		16	0.994512
1797			83	16	0.994512
2061	14	85			0.993533
2063		85		14	0.993533
2064	85		14		0.993533
2065	85			14	0.993533
2194	83		16		0.994512
2346		40		60	1.0
2371	20		80		0.995493
2393	57	42			1.0
2476		16		83	0.994512
2514	80	20			0.995493
2526		25	50		1.0
2529		50	50		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain