SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2289

Length: 1275 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2289

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc/iron transporter, putative n=1 Tax=Ricinus communis RepID=B9SP03_RICCO	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	zinc iron	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	zinc ion transport	GO:0006829	Biological Process	74%
Blast2go	transmembrane transport	GO:0055085	Biological Process	74%
Blast2go	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	74%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	74%
Blast2go	membrane	GO:0016020	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	RadC protein	IPR001405	-	-
Sma3	Zinc/iron permease	IPR003689	-	-
Sma3	Zinc/iron permease, fungal/plant	IPR004698	-	-
Sma3	TonB box, conserved site	IPR010916	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE89

Fln msg:

Fln protein: MENSSAAMKYFTAGLAIDLCFMVNFVAADNSSCSNENSEDSCRNKTEALHLRIGALASILVAGTIGVCLPVVGRNFPALSPDRNIFFVIKAFAAGVILATGFVHVLPDAFAFLTSDCLNPNPWGNFPFAGFIAMMAAVCTLMVDALATGYYERFHFRNQNKGNQVNEGTDLGNGNGLEHENHVHTHSHATHGHAHGSNTIEEDSTIRHRVIAQVLELGIVAHSVIIGISLGASESPCTIRPLVAALSFHQFFEGMGLGGCIVQAGFKNKSAAVILMTFFFAVTTPFGIALGIGISSAYNENSPTALIIEGVFNAASSGILIYMALVDLLAADFINSSRIKQNGTLQLCSYVALLLGIGSMSLIAKWA*

Protein Length: 369

Fln nts: AGATATTTATGGACCGATCGTAGTAACAAATAGTTGTGAGGA_-_ATGGAAAATTCATCAGCAGCCATGAAATATTTCACAGCTGGTTTGGCCATAGATTTATGTTTCATGGTCAATTTTGTGGCAGCAGATAACAGTTCTTGCTCTAATGAAAATAGTGAAGATTCATGCAGGAATAAGACTGAAGCTCTCCATCTGAGGATTGGGGCACTAGCTTCTATTCTTGTGGCAGGCACTATTGGGGTATGCTTGCCTGTTGTGGGCAGGAATTTCCCTGCTTTAAGTCCTGATAGGAATATATTCTTTGTCATTAAGGCTTTTGCTGCTGGTGTGATTCTTGCTACTGGTTTCGTCCATGTTCTTCCTGATGCCTTCGCATTTCTTACCAGTGACTGCTTAAATCCGAATCCATGGGGCAACTTCCCCTTTGCTGGGTTTATAGCAATGATGGCCGCAGTTTGTACTCTCATGGTGGATGCTCTAGCCACTGGTTACTACGAGCGTTTCCACTTTAGAAATCAAAACAAAGGTAATCAAGTTAATGAGGGTACAGATCTTGGTAATGGCAATGGCTTAGAGCATGAGAATCATGTTCATACACACTCACATGCTACACATGGGCACGCCCATGGATCCAATACTATAGAAGAAGATTCCACTATTCGGCATCGTGTCATTGCTCAGGTGTTAGAGTTGGGTATTGTCGCTCACTCCGTTATTATTGGTATCTCATTGGGTGCTTCTGAAAGTCCATGCACAATTAGGCCTTTAGTGGCAGCCTTATCATTTCACCAATTTTTTGAAGGAATGGGTCTTGGTGGATGCATCGTTCAGGCGGGTTTCAAGAATAAGTCGGCTGCGGTTATCCTGATGACGTTTTTCTTTGCTGTGACAACGCCCTTTGGTATTGCATTGGGAATTGGGATCTCATCGGCTTACAACGAGAACAGCCCCACGGCCCTGATCATTGAAGGAGTATTTAATGCGGCGTCTTCTGGAATTCTGATATACATGGCTCTGGTGGATCTTCTTGCTGCAGATTTTATCAATTCCTCTCGGATTAAACAGAATGGGACGCTACAGCTGTGCTCATACGTCGCTCTCTTGTTAGGTATAGGGTCCATGTCTTTGATCGCCAAATGGGCTTGA___AATTTTACCATATCTCTTCCCTACAGAATCTCGTATATCTCTTTGTTGGTTGTATCGACGTTTCTGTACGTACACATATTGTCACAATTGACTGAATTTTCTCTTGGATGTACATTGTCAATGGATTCA

Fln Alignment:

Contig2289___RNKTEALHLRIGALASILVAGTIGVCLPVVGRNFPALSPDRNIFFVIKAFAAGVILATGFVHVLPDAFAFLTSDCLNPNPWGNFPFAGFIAMMAAVCTLMVDALATGYYERF-----------------------HFRNQNKGNQVNEGTDLGNGNGLXXXXXXXXXXXXXXXXXXXXXTIEE----------DSTIRHRVIAQVLELGIVAHSVIIGISLGASESPCTIRPLVAALSFHQFFEGMGLGGCIVQAGFKNKSAAVILMTFFFAVTTPFGIALGIGISSAYNENSPTALIIEGVFNAASSGILIYMALVDLLAADFINSSRIKQNGTLQLCSYVALLLGIGSMSLIAKWA
D5AE89______________RNEELALHMKTVAIFIILIASAFGVAFPLLARRLKCVKMDGTIFVFSKAFATGVILATGFVHLLPDAQEALTDDCLPETPWLKFPFADFIAMLAVLFTLLADFVSTQYYERKQLKDRVDTMACNTIEERSWPKLGHASSTEDANQKNEDALHGDGHMHIVGIHAHVASHNHNHPHGHDSCADETHAHTSPSMHDFSIRHTVVSQVLEMGIISHSVIIGLSLGVSQSPCIIRPLVATLTFHQFFEGLALGGCVSQASF--KSLYAFFMACLFAITTPACIAIGTGVSSISNPNEPRALILEGIFDSISAGILIYMSLVDLIATDFL-SKEMYCSPKLQCVSYIALLMGGTVMASLAIWA

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
628	85		14		0.993533
630		14	85		0.993533
631	14		85		0.993533
632	85	14			0.993533
635	14	85			0.993533
687		14		85	0.993533
689	85	14			0.993533
701		12		87	0.992554
704		75		25	1.0
705			87	12	0.992554
725	11			88	0.923564
728		88		11	0.923564
752	88		11		0.923564
766		87	12		0.992554
812		33		66	1.0
827		87		12	0.992554
857	25			75	1.0
860	25		75		1.0
868		12		87	0.992554
875	12		87		0.992554
878		25		75	1.0
881		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain