SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2273

Length: 814 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene2273 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	tRNA-dihydrouridine synthase 3-like n=3 Tax=Arabidopsis RepID=DUS3L_ARATH	-	-	83%
FL-Next	sp=tRNA-dihydrouridine synthase 3-like; Arabidopsis thaliana (Mouse-ear cress).	-	-	83%
Blast2go	trna-dihydrouridine synthase 3-like protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	tRNA processing	GO:0008033	Biological Process	89%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	89%
Blast2go	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	89%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	89%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	89%
Blast2go	tRNA dihydrouridine synthase activity	GO:0017150	Molecular Function	89%
Blast2go	vacuole	GO:0005773	Cellular Component	89%
Blast2go	plastid	GO:0009536	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	tRNA-dihydrouridine synthase	IPR001269	-	-
Sma3	Transposase, MuDR, plant	IPR004332	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	tRNA-dihydrouridine synthase, conserved site	IPR018517	-	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
388	33		66		1.0
434		66		33	1.0
659			9	90	0.999842
742	82	11	5		0.999919
744		18	81		1.0
745	87	12			0.999964
746		12	81	6	0.999943
755		76		23	1.0
761		23		76	1.0
764	23		76		1.0
765			23	76	1.0
766			23	76	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain