SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2243

Length: 1187 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2243

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ABC transporter B family member 19 n=5 Tax=Camelineae RepID=AB19B_ARATH	-	-	77%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	43%
Blast2go	abc transporter b family member 19-like	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	response to far red light	GO:0010218	Biological Process	88%
Blast2go	acropetal auxin transport	GO:0010541	Biological Process	88%
Blast2go	positive gravitropism	GO:0009958	Biological Process	88%
Blast2go	anthocyanin accumulation in tissues in response to UV light	GO:0043481	Biological Process	88%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	88%
Blast2go	basipetal auxin transport	GO:0010540	Biological Process	88%
Blast2go	regulation of cell size	GO:0008361	Biological Process	88%
Blast2go	lateral root development	GO:0048527	Biological Process	88%
Blast2go	auxin efflux	GO:0010315	Biological Process	88%
Blast2go	response to blue light	GO:0009637	Biological Process	88%
Blast2go	transmembrane transport	GO:0055085	Biological Process	88%
Blast2go	ATP catabolic process	GO:0006200	Biological Process	88%
Blast2go	stamen development	GO:0048443	Biological Process	88%
Blast2go	protein binding	GO:0005515	Molecular Function	88%
Blast2go	auxin efflux transmembrane transporter activity	GO:0010329	Molecular Function	88%
Blast2go	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	88%
Blast2go	ATP binding	GO:0005524	Molecular Function	88%
Blast2go	integral to membrane	GO:0016021	Cellular Component	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: Distance to subject end: 1067 aas, your sequence is shorter than subject: 248 - 1316

Fln protein: MGEVGHLQLGSVDVSDRASNVSKSSCKEMNDGTIQDEKKKKTELCVPFYKLFSFADKYDYLLMFVGTIGAVIHGAAMPVFFVFFGELINGFGKNQRNPAKMVDEVSKYALNFLYLGLVILGSSWAEIACWMHTGERQVGKLREKYLEAVLKQDVGFFDTDAMTGDIVFSISTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLAILSVAVIPGIAFAGGLYAYTITGLTSKSQEAYANAGNL

Protein Length: 249

Fln nts: ATGGGGATTGCATTACTTATTTACTTTCCCCATCATATAATGGGACAGAGGTATGATATTGGAGAATGGATTATGTATCTTTGTTCTGGTTTTTTAAATAGGCATCAGAATTTATATATAAACTATTGCTTCTGGATCATGGGGTTATGAATGAACCTAATATCTAGGGACTAGGGGTATTGCATTTATTCATCGAGATCCCCCACCTTCAGATTTCTAATTATATAAGCTGGCATCAAGAAATTGACCCACTAAATATTTTACCAGAATCAAGGTCTCCTCTTTGACATATTTAAGTACCGAGCTGAGATTTCAATTCATTCGTAGCAGCATCTTCATTCTTTGCTGCTTCTCCGCTTTCTGTATAGAATACCATGCAGCCTTAGAGTAAAAGTTCCATTTCAGAGAAGTATACAGTGAGATTGTCGGAGCAACTTTAGCCC_-_ATGGGCGAAGTCGGGCATCTTCAGTTGGGTTCTGTCGATGTATCTGATAGAGCATCAAATGTGTCAAAGAGCAGCTGCAAGGAGATGAATGATGGTACTATTCAGGACGAGAAAAAGAAGAAAACTGAGCTGTGTGTTCCATTTTACAAGCTCTTTTCTTTTGCTGATAAATATGACTATTTGCTCATGTTCGTGGGAACGATAGGTGCAGTCATCCATGGTGCAGCCATGCCTGTCTTCTTTGTGTTCTTCGGAGAATTGATCAATGGATTTGGAAAAAATCAGAGAAATCCTGCCAAAATGGTGGATGAAGTTTCTAAGTATGCCCTGAATTTCCTGTACCTGGGTTTGGTGATCCTGGGTTCCTCATGGGCAGAAATTGCTTGTTGGATGCACACTGGGGAGAGGCAGGTGGGTAAATTGAGAGAGAAATACTTAGAAGCAGTGCTGAAGCAGGATGTGGGATTCTTTGACACGGATGCTATGACCGGGGATATAGTTTTCAGCATTTCCACAGATACTCTTCTCGTTCAAGATGCAATCAGTGAAAAGGTGGGAAATTTTATACACTACCTATCAACATTCTTGGCGGGTTTGGTGGTTGGATTTGTTTCAGCATGGAGATTAGCTATCCTGAGTGTTGCCGTTATACCAGGCATTGCATTTGCTGGAGGTTTATATGCTTATACGATCACAGGATTGACATCTAAGAGCCAAGAAGCTTATGCAAATGCAGGGAACTTG

Fln Alignment:

Contig2243___GSVDVSDRASNVSKSSCKEMNDGTIQDEKKKKTELCVPFYKLFSFADKYDYLLMFVGTIGAVIHGAAMPVFFVFFGELINGFGKNQRNPAKMVDEVSKYALNFLYLGLVILGSSWAEIACWMHTGERQVGKLREKYLEAVLKQDVGFFDTDAMTGDIVFSISTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLAILSVAVIPGIAFAGGLYAYTITGLTSKSQEAYANAGNL
E6Y0T0______________GNHDHGAVSLNIEKVSEMNSNMAKAKDKKKKENNKVVPFHKLFVTADSLDKLLMALGTIGAVANGVSIPLMTILFGGLINAFGENSTDGKKVMNEVSKLALEFVYLACGAGVASLLQVSCWMCTGERQATRIRSLYLKTILRQDIGFFDSEASTGEVIGRMSGDTILIQDAMGEKVGKFIQFITTFIAGFVIAFIKGWKLSLVMLSMIPLLVVSGGSMAMIISKMSSRGQQAYSEAANI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
948		12		87	0.992554
996			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain