SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2224

Length: 1704 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene2224 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RFZ3_RICCO	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	40%
Blast2go	receptor like protein kinase sol2	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	regulation of root meristem growth	GO:0010082	Biological Process	71%
Blast2go	phosphorylation	GO:0016310	Biological Process	71%
Blast2go	primary metabolic process	GO:0044238	Biological Process	71%
Blast2go	regulation of flower development	GO:0009909	Biological Process	71%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	71%
Blast2go	receptor serine/threonine kinase binding	GO:0033612	Molecular Function	71%
Blast2go	kinase binding	GO:0019900	Molecular Function	71%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Arf GTPase activating protein	IPR001164	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	BAR domain	IPR004148	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPN7

Fln msg: your sequence is shorter than subject: 346 - 737

Fln protein: DVRGRSRRLVLGIVLGSLTGFAAAGVVATIMRAAVIFINKVPLIKGPIVFDSRIGSKMLSFLGQESCLDEADLVGVGPNGRVYRANLENGMTVAVKRINAVESYEMMSTSVKRQIQEELEVAGRVRHRNLVALQAYVRQPNAHLLVYDLISNGSLADALKKIKDNQLQLSWPMRHKIAVGTIVGLQYLHFQCNPRVVHCDLKPANILLDDEFEPHLVDFGLGKLMPNSGAAGYVAPECYPACKYTDKSDVFSFGVVLAVLLTSKEPTDSFFDGAPRGSIGRWLRHLQQTGKAFEALDKGIIEGEGEQEEEMLMAVRIAAACLAEMPADRPSSAELVSMLTQLHSF*

Protein Length: 347

Fln nts: TGATGTGAGAGGCAGGTCCAGAAGGTTGGTTTTGGGGATTGTCTTGGGTAGCCTGACTGGTTTTGCAGCTGCTGGGGTTGTAGCAACTATAATGAGAGCTGCTGTGATTTTTATCAACAAGGTGCCTCTGATAAAGGGTCCCATTGTCTTTGATTCTAGGATTGGTTCCAAGATGCTGTCATTTTTAGGGCAGGAGAGTTGTCTGGATGAAGCAGACCTTGTTGGGGTCGGTCCCAATGGAAGGGTTTACAGAGCCAATCTAGAAAATGGAATGACTGTTGCCGTGAAAAGGATTAATGCTGTGGAATCTTATGAAATGATGAGTACTTCTGTCAAGAGGCAGATTCAGGAGGAGTTGGAGGTTGCAGGCAGAGTGAGGCATAGAAATCTTGTCGCGTTGCAAGCTTATGTTCGACAACCCAATGCCCATTTATTAGTTTACGACCTCATTTCCAATGGGAGCCTTGCAGACGCTCTGAAGAAAATCAAGGATAACCAGCTGCAGCTGAGCTGGCCAATGCGGCATAAAATTGCAGTTGGCACAATAGTGGGTCTTCAGTATCTTCATTTCCAGTGCAATCCCCGTGTTGTACACTGTGATCTCAAGCCTGCAAATATTCTTCTTGATGATGAATTTGAACCCCATTTGGTTGATTTTGGGTTGGGTAAGCTTATGCCAAACAGTGGCGCAGCAGGGTATGTTGCTCCTGAATGTTATCCGGCATGCAAGTATACAGACAAGAGTGATGTGTTCAGCTTTGGGGTGGTTTTAGCTGTTTTGCTGACCAGTAAAGAACCTACAGATAGTTTCTTTGATGGGGCTCCACGGGGTAGTATTGGTCGATGGCTGCGGCATCTTCAACAAACTGGAAAAGCCTTTGAAGCTCTTGATAAAGGGATTATTGAAGGGGAGGGAGAACAAGAAGAGGAGATGCTCATGGCAGTGAGGATTGCTGCAGCGTGCCTTGCAGAGATGCCTGCTGATCGCCCATCTAGTGCAGAATTGGTCTCCATGCTTACCCAATTGCACAGTTTCTAG___TAGATTCAGCTTTTAGGTTGTTTTGGCTGTTCCACTGACTGGTAAAAGGACTCACAGAGTGTTTTTCTTATGAAGCTCTGTGTTGTGTAGTATTGGACACAGGCTATGGCATTTTGAACAGAAGGGAATGGCCGATCAAGCTCTTGATAAAAGGCTTATCCAAGGAGAAATAAAGCAAGAAAAAGAGATGCTAAAGGCATTGAGGATTGCTGCTGGATGACTTACACAGATGCCTGTGTATTGCCCATCTAGGACAGAATTGGCTTCCGTGTTTTTATTCAACTGCATGTTCTCTAGTGTGGTCATTCTACTTCATCTTCCTGGCATCTGAATTTAAGGTTTGTTTGTTCTGCTGCTTGACATTGTTAATTTCCATGTAATAGAAATGAGGTTTTCTAGTTAGAGCTTAAGATGAAACTGGTCAATAATGTCCTCTCTGACTCAGTTTTCTCATATTTTATTCCTCTTAGTTTTGTGAACTTCTGTGTATACTATAGCATGCGAATCATCATTCTTTCCTTTTGGAAAGTTATTTTCTGATTCCTTTATTTAAGTTATTTTGAAGATTGTGAGATATCCTCTCATATTCTCAGATATTTGGATGTGTTGTATTCTAAACTTTTAACTGCAATATTGACCATGTTCAGTCTTTTAGATGCTGCTAC

Fln Alignment:

Contig2224___LVLGIVLGSLTGFAAAGVVATIMRAAVIFINKVPLIKGPIVFDSRIG-SKMLSFLGQESCLDEADLVGVGPNGRVYRANLENGMTVAVKRINAV--------ESYEMMSTSVKRQIQEELEVAGRVRHRNLVALQAYVRQPNAHLLVYDLISNGSLADALKKIKDNQLQLSWPMRHKIAVGTIVGLQYLHFQCNPRVVHCDLKPANILLDDEFEPHLVDFGLGKLMPN----------SGAAGYVAPECYPACKYTDKSDVFSFGVVLAVLLTSKEPTDSFFDGAPRGSIGRWLRHLQQTGKAFEALDKXXXXXXXXXXXEMLMAVRIAAACLAEMPADRPSSAELVSMLTQLHS
C0PPN7______________MIVGIVMGAISAF----VFSFLFRMFLFYIRERPKVQGAVIYSPLIKKTEDLAFLETDEGLLSGEPIGRGGSGEVYRARLPYGKEIAIKRIHQVTPNQSDLTEEDTKLLDKRRRQIRSELETLGQIRHRNLVALLAYVARPDCHLLVYEYMKNGSLQQALTRVRDGTLELAWPIRHKIALGIASGLQYLHYNSTPKIIHRDLKPGNILLDEDFEARIADFGLAKALPEAATHASSSNVAGTVGYIAPEYHQTLKFTIKCDVYSFGVVLAFLVTGKEPSHDFFQEISQASVPIWLRSIVNSEKASQAID--PSLVGKGYEDQILLVLKIACFCTDDDPRKRPTSRDVFTMLTQINN

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
742	11		88		0.923564
745		88		11	0.923564
746			88	11	0.923564
750	11	88			0.923564
752			88	11	0.923564
753		88	11		0.923564
754	88			11	0.923564
798	12	87			0.992554
936	80	20			0.995493
937	80			20	0.995493
938	80		20		0.995493
939		80		20	0.995493
940		80		20	0.995493
941	80			20	0.995493
942		80	20		0.995493
943		80	20		0.995493
945	20	80			0.995493
946	80			20	0.995493
952			83	16	0.994512
1112		33		66	0.997452
1114		33		66	0.997452
1327	25	75			0.996473
1328		75	25		0.996473
1330		75	25		0.996473
1331	80			20	0.995493
1332	20	80			0.995493
1335	20			80	0.995493
1337		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain