SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2219

Length: 1242 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2219

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Heme oxygenase 1 n=2 Tax=Pinaceae RepID=Q94FW5_PINTA	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	heme oxygenase 1 protein 2	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Heme oxygenase.	EC:1.14.99.3	-	0.0	73%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860		0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	red, far-red light phototransduction	GO:0009585	Biological Process	73%
Blast2go	chloroplast-nucleus signaling pathway	GO:0010019	Biological Process	73%
Blast2go	regulation of meristem growth	GO:0010075	Biological Process	73%
Blast2go	phytochromobilin biosynthetic process	GO:0010024	Biological Process	73%
Blast2go	heme oxidation	GO:0006788	Biological Process	73%
Blast2go	heme oxygenase (decyclizing) activity	GO:0004392	Molecular Function	73%
Blast2go	heme binding	GO:0020037	Molecular Function	73%
Blast2go	chloroplast	GO:0009507	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	Haem oxygenase	IPR002051	-	-
Sma3	Plant specific Rop nucleotide exchanger, PRONE	IPR005512	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Haem oxygenase-like	IPR016053	-	-
Sma3	Haem oxygenase-like, multi-helical	IPR016084	-	-
Sma3	Haem oxygenase (decyclizing), plant	IPR016951	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV53

Fln msg: Overlapping hits, possible frame ERROR between 797 and 784, your sequence is shorter than subject: 306 - 323

Fln protein: MAVTFSISETLPKNLQFVKQGISQRAMGRATKPVTRLNPNGPSNNFPSMTSTLFIGVEFDRKSANVMVRASTTGKKRKKFYPGEDKGFVEEMRFVAMKLHTNRTVKQGEKAKEKVEAEPDDDAESQTVGAWEPTIKCYLQFLVDSKLLHETLEAIIDRAPHSSYAEFRNTGLERSERLAKDLEWFLQQGHAIPDPRSPGKSYSKYLEKIAEKDPPAFICHFYNIYFAHNAGGQMIGRxxxxxxILDGRELEFYKCDGDLLKMLRDVKEKLNKVAEGWSREEKNRCLEETRKSFTYSGKIIRLIIT*

Protein Length: 307

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGTGCTAAGAGGGAGAGGAAGATAGACCCAAAAAAATATTTGAAA_-_ATGGCTGTGACATTTTCAATATCTGAGACGCTGCCAAAGAATTTACAGTTCGTTAAGCAAGGCATTAGCCAGAGAGCAATGGGTAGAGCCACTAAACCCGTTACCCGCCTAAACCCAAATGGCCCATCGAACAATTTTCCATCAATGACGTCAACACTGTTCATTGGGGTGGAATTTGACAGAAAATCAGCGAATGTGATGGTGAGGGCGTCTACTACCGGAAAAAAGCGGAAGAAGTTTTACCCGGGCGAAGACAAGGGGTTCGTGGAGGAGATGAGATTCGTGGCAATGAAACTTCACACCAATCGTACTGTAAAACAAGGGGAGAAGGCGAAGGAGAAGGTGGAGGCGGAGCCTGATGACGATGCTGAATCTCAGACTGTGGGCGCCTGGGAGCCCACCATTAAATGCTACCTTCAATTCTTGGTTGACAGTAAGCTCCTCCACGAAACTCTCGAGGCTATTATCGACAGAGCTCCGCATTCGTCCTATGCCGAGTTCAGGAATACGGGCTTGGAAAGATCAGAAAGGCTCGCTAAAGATCTGGAATGGTTTCTGCAGCAAGGCCATGCTATTCCGGATCCCAGATCTCCTGGAAAAAGCTATTCCAAGTATTTAGAAAAAATTGCAGAGAAAGATCCACCAGCATTTATATGTCACTTTTACAATATATATTTTGCACATAATGCTGGAGGTCAGATGATTGGAAGAxxxxxxxxxxxxxxxxxxATATTGGACGGAAGAGAGCTTGAGTTTTATAAGTGTGATGGAGATCTTCTTAAAATGCTGAGGGACGTTAAGGAAAAGCTGAATAAAGTTGCAGAGGGCTGGTCTCGGGAAGAGAAAAACCGTTGCTTGGAAGAGACGAGAAAGTCCTTCACGTACTCTGGAAAAATTATTCGCTTGATTATCACATAA___TCATCTTCCATAATGACAGAATAATCTGATTGGAACAATGCTTTTGGTTTGGGTGTAAATCCATGATCTTGATTCATTCAGTTTCATTATCTATCGGATGTAATTCACGGGTCATTTTTTATCTTTCTCTGACAACTTTAGCCTGCTTTGAAGCCTCCCCACGAGAAGGGTTATCTTTTGCGCATAATGAAGAAGTCAAATACATGTTGCCATATTTTTTCTAAAAATAATCATTCCATCTATATTGTATAATTG

Fln Alignment:

Contig2219___SETLPKNLQFVKQGISQRAMGRATKPVTRLNPNGPSNNFPSMTSTLFI-------------GVEFDRKS-------ANVMVRASTTGKKRKKFYPGEDKGFVEEMRFVAMKLHTNRTVKQGEKAKEKVEAEPDDDAESQTVGAWEPTIKCYLQFLVDSKLLHETLEAIIDRAPHSSYAEFRNTGLERSERLAKDLEWFLQQGHAIPDPRSPGKSYSKYLEKIAEKDPPAFICHFYNIYFAHNAGGQMIGRxxxxxILDGRELEFYKCDGDLLKMLRDVKEKLNKVAEGWSREEKNRCLEETRKSFTYSGK
A9NV53______________SQALLKDMQIASHAHANELP--TSKPIPFMNPNAQTRHFPLNKSAFAVRSNKSLLNITSDTGFEGQSRSYGKGNSVGRLVVRAAATAEKPRKNYPGEAKGFVEEMRFVAMRLHTRDVAKEGKK-------EPD----AQPIGKWEPTIEGYLKFLVDSKVVYDTLEDVVQKAAYPAYAEFRNTGLERSEKLAKDLEWFRQQGHIIPEPSSPGISYAKYLQELSEKDPPAFLCHFYNVYFAHTAGGRMIGRxxxxxILDGRELEFYKWEEDLTALLNRVREKINKVAEGWSREEKNHCLEETEKSFDYSGK

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
673	66		33		0.997452
677	66		33		0.997452
679	33			66	0.997452
685	33		66		0.997452
686			33	33	0.997753
715		50	25	25	0.995533
716	75			25	0.996473
718		75	25		0.996473
719	75			25	0.996473
722	75	25			0.996473
725			25	75	0.996473
726	75		25		0.996473
806		12		87	0.992554
809		12	87		0.992554
936	90	10			0.90298
938	90			10	0.90298
941	90			10	0.90298
944	90	10			0.90298
945	90	10			0.90298
946			90	10	0.90298
948		90	10		0.90298
960		77	22		0.999999
1105	71	14			0.984337
1106			14	85	0.993533
1108		33		66	1.0
1109			33	66	1.0
1110		16		83	0.994512
1111			20	80	0.995493
1113		20		80	0.995493
1118			20	80	0.995493
1121		80	20		0.995493
1123		20	80		0.995493
1126	80			20	0.995493
1127	80	20			0.995493
1128	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain