SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2216

Length: 1363 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2216

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium-binding pollen allergen n=1 Tax=Arachis hypogaea RepID=Q45W79_ARAHY	-	-	6.0e-29	54%
FL-Next	sp=Polcalcin Jun o 2; Juniperus oxycedrus (Prickly juniper).	-	-	0.0	53%
Blast2go	calcium-binding pollen allergen	-	-	5.10493e-42	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	root hair elongation	GO:0048767	Biological Process	5.10493e-42	66%
Blast2go	response to cold	GO:0009409	Biological Process	5.10493e-42	66%
Blast2go	cytoplasm	GO:0005737	Cellular Component	5.10493e-42	66%
Blast2go	nucleus	GO:0005634	Cellular Component	5.10493e-42	66%

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O64943

Fln msg: Overlapping hits, possible frame ERROR between 491 and 472, your sequence is longer than subject: 230 - 165

Fln protein: MGFPCFINQKNAQTEPSHTQSRFWSCILPPISRSVSSTARSKAYQSPKRSSSRYGKRSLRRERNDDEPVEPCSPTPSGTRYGSAVELEEVFKKFDTNGDGKLSLSELGTLMRSLGGNPTEEELRLIVEAADVGGDPYIDLTEFVLLNTEGVDTPxxxxxxxxCAFRMFDRDGNGTISPLELLHVLTSLREPCTLSDCEAMIRTFDSNGDGLINFDEFTAMMNASDSSLK*

Protein Length: 231

Fln nts: TATTACCG_-_ATGGGTTTTCCGTGTTTTATCAATCAGAAAAACGCTCAGACTGAACCATCGCATACACAATCACGATTTTGGTCCTGTATATTGCCTCCCATATCCCGATCAGTGTCCTCCACGGCCAGATCAAAGGCTTACCAATCCCCGAAAAGGTCATCCAGTCGATATGGGAAGAGGTCGCTGAGAAGGGAAAGGAACGATGATGAGCCCGTGGAACCGTGCTCTCCTACTCCTTCCGGCACGCGGTACGGTAGTGCTGTGGAGCTGGAGGAAGTTTTCAAGAAATTCGACACTAATGGCGATGGTAAATTATCATTATCGGAGCTGGGCACCCTTATGCGATCGCTCGGAGGGAACCCAACGGAGGAAGAGCTTCGGCTGATCGTTGAGGCGGCGGATGTCGGCGGAGATCCGTACATCGATCTGACAGAGTTCGTACTTCTCAACACAGAGGGTGTGGACACCCCAxxxxxxxxxxxxxxxxxxxxxxxxTGCGCCTTCAGGATGTTTGACAGAGATGGGAATGGAACTATCTCTCCCCTTGAACTCCTCCATGTTTTAACCAGTCTGAGAGAGCCTTGCACCCTGAGTGACTGCGAGGCGATGATCAGAACATTCGATTCGAATGGCGATGGCCTCATCAATTTCGACGAGTTCACAGCAATGATGAACGCATCTGACAGTTCATTGAAATAG___TATAAACAGATTTCAATAAGAAGCTCTTGGTAGAGTGGTGGCTTTGCATACCAGTTTCTTGGTTGTTCTTGTTTATGGTATCAGAATGGGATTGAGCTTAACTCTATCATGGGAGTGTTCAAGACTAGAGTGTTTTGGAAAGCTAATCCTCTGTACAGTAGAGCATGGCATATAGGGTTTCAGTGTGCTATGCTTGATTTGTTGTAAGCTGTGCCATGTAAATGGCAGAAATATGTTCATGTGTGCAGAATAAAACGCTGTAAATATGATTTGTGAATCTTTAATGTTGTAGATCTGTGAAATTTCTGAAAAGAGGATAGAAATTCACAGATCTCCCTAACCTGTGGGAACTTTGAATCTGTTGTGGAAGGCTGTATTACAGCTGATGTTGTTGTCACAAGTGTTTCCCTGAGTGCTCAATGAATTGTACATAGATATTTGTTGTGTGTAGAATTGATGATCTGCTGTTCCATATATGAGGTGTCAATCTTCTCAGAAGTGCAGGCACGCTGCAGAGCCAACAGAATTTCTTTGGAGAAGCGGTATTTGTTCACTGTATGAGTACCACATACAGCTGAGTGGGACTGTTGCAGCACGACAGATGAAGATTATAGCCAACGACCAAGCGCGGAGTGAAGAAAACCACAGCCATTGAAAGGCATACATT

Fln Alignment:

Contig2216___SAVELEEVFKKFDTNGDGKLSLSELGTLMRSLGGNPTEEELRLIVEAADVGGDPYIDLTEFVLLNTEGVDTPxxxxxxxCAFRMFDRDGNGTISPLELLHVLTSLREPCTLSDCEAMIRTFDSNGDGLINFDEFTAMMNA
O64943______________SVHELEEVFKKFDANGDGKISGSELADILRSLGSDVGEAEVKAMMEEADADGDGYVSLQEFVDLNNKGAS--xxxxxxxNAFKVFDRDCNGSISAAELCHTLESVGEPCTIEESKNIIHNVDKNGDGLISVEEFQTMMTS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1179		16		83	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain