SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2203

Length: 1255 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2203

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nucleotide-diphospho-sugar transferase [Arabidopsis thaliana] gb\|AEE36384.1\| nucleotide-diphospho-sugar transferase [Arabidopsis thaliana]	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	n-acetylglucosaminyltransferase-like protein	-	-	64%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Glycosyltransferases, Hexosyltransferases.	EC:2.4.1.-	-	0.0	64%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	64%
Blast2go	N-Glycan biosynthesis	00510	64%
Blast2go	Mucin type O-Glycan biosynthesis	00512	64%
Blast2go	Various types of N-glycan biosynthesis	00513	64%
Blast2go	Other types of O-glycan biosynthesis	00514	64%
Blast2go	Biosynthesis of 12-, 14- and 16-membered macrolides	00522	64%
Blast2go	Glycosaminoglycan biosynthesis - keratan sulfate	00533	64%
Blast2go	Lipopolysaccharide biosynthesis	00540	64%
Blast2go	Peptidoglycan biosynthesis	00550	64%
Blast2go	Glycerolipid metabolism	00561	64%
Blast2go	Glycosylphosphatidylinositol(GPI)-anchor biosynthesis	00563	64%
Blast2go	Sphingolipid metabolism	00600	64%
Blast2go	Glycosphingolipid biosynthesis - lacto and neolacto series	00601	64%
Blast2go	Glycosphingolipid biosynthesis - globo series	00603	64%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	64%
Blast2go	Carotenoid biosynthesis	00906	64%
Blast2go	Zeatin biosynthesis	00908	64%
Blast2go	Flavonoid biosynthesis	00941	64%
Blast2go	Anthocyanin biosynthesis	00942	64%
Blast2go	Flavone and flavonol biosynthesis	00944	64%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	64%
Blast2go	Betalain biosynthesis	00965	64%
Blast2go	Biosynthesis of type II polyketide products	01057	64%
Blast2go	Metabolic pathways	01100	64%
Blast2go	Biosynthesis of secondary metabolites	01110	64%

Source	GOs	Term	Type	Identity
Blast2go	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	64%
Blast2go	endomembrane system	GO:0012505	Cellular Component	64%
Blast2go	intracellular membrane-bounded organelle	GO:0043231	Cellular Component	64%
Blast2go	cytoplasmic part	GO:0044444	Cellular Component	64%
Blast2go	membrane	GO:0016020	Cellular Component	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	EXTL2, alpha-1,4-N-acetylhexosaminyltransferase	IPR015338	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADK4

Fln msg: your sequence is shorter than subject: 233 - 327

Fln protein: VVTLAVTPIYIVKQPSRSLNDRFLPRGAVIATRSVLVCDDDVEIDAESICFALRVWEQHGGRRLVGFFARSHGFELETGSWIYTVHPDKYSIVLTKLMIVATEYLFLYTCEAPPGVREFVEENRNCEDIAMNFLVADRTGNGPLLVRGNPRDWGDTRNSGGGGVVDAALSNREHHRKFRGGCITEFHRLWGRMPLRYSYGVVGSNVREQALCDKFGVLVPCDQEAGSNPSRP*

Protein Length: 234

Fln nts: CGTCGTGACCTTGGCTGTCACTCCGATCTACATTGTGAAGCAGCCCTCCCGCAGCCTCAATGACCGCTTTCTCCCTCGAGGGGCCGTCATCGCGACTCGATCCGTTCTCGTCTGTGACGATGACGTGGAGATCGATGCCGAATCCATCTGCTTCGCCCTCCGCGTCTGGGAGCAACACGGCGGTCGGCGGCTCGTCGGCTTCTTCGCGCGTTCACATGGGTTCGAACTGGAGACTGGCTCCTGGATCTACACGGTCCACCCGGACAAATACTCCATTGTGCTCACCAAGCTCATGATCGTTGCCACGGAGTATTTGTTCCTTTACACGTGCGAGGCCCCGCCAGGGGTCAGGGAATTCGTGGAGGAGAACAGGAATTGTGAGGATATCGCCATGAATTTCCTCGTCGCGGATCGAACCGGGAACGGGCCGCTGTTAGTCCGCGGGAACCCTAGGGATTGGGGCGATACACGGAATTCTGGCGGAGGTGGGGTAGTTGATGCTGCGTTAAGCAATCGAGAACATCACAGGAAATTCCGCGGGGGCTGCATTACTGAGTTCCATAGGCTCTGGGGCCGGATGCCCCTGAGATATAGCTATGGGGTTGTGGGTTCAAATGTCCGGGAACAGGCGCTCTGTGACAAGTTTGGGGTTCTCGTTCCCTGTGATCAGGAGGCGGGTTCGAATCCCAGTAGGCCCTGA___CCATGTTCCGAAGAGCACTAGCACTATTTTTTAAATTGTGCTTGGGGTTAATACATGTAAGCGGTACCTTTTAATATGAGAAACTACAGTGAAAGAGATCCAATTTCACACCTCATTGAACAACACTATTTAGTATTGAGACCATCTGTAAGCAGAATTGGTTAGCATTACGATTTTATAACTCACGGAACAACAATTTCCGGGGGAATTTGAATCAAATTGCCATTCATCGCCCTTCGGCAAGCAAGGGTTTCTTCCTTCCGGCAAAGGGCAGCTTATCAGTTGGACGTCTGTCAAATTTGGTAGAAGCTATTACATGGCTAAAGTTTATTTTCTGGTAAGCGTCAATTGCCTACATATCTCATCTTTCATCCTGATTCTCAGCATCTATGATTCCAATGTTGTGCATTTTTTTACACACAGCTTTGTTGAATCAAAGGCAAGATGATATGCTTATCAGCTGGAGAATCTAAACCTTGTAAAGGCATGTGTCTGTTGTTTGTTATTTATTTTGGAATCCTGAGCAATTTGTGGTATCTTTTCAAATTGTTTCAA

Fln Alignment:

Contig2203___SLNDRFLPRGAVIATRSVLVCDDDVEIDAESICFALRVWEQHGGRRLVGFFARSHGFELET--------GSWIYTVHPDKYSIVLTKLMIVATEYLFLYTCEAPPGVREFVEENRNCEDIAMNFLVADRTGNGPLLVRGNPRDWGDTRNSGGGGVVDAALSNREHHRKFRGGCITEFHRLWGRMPL
D5ADK4______________NLNNRFKPIEG-LRTDAIFSIDDDVVVPCSTLEFAFSVW-QSAPYSMVGFVPRMHWVDTKSADAIRYKYGGWWSVWWMGTYSMVLSKAAFFHQKYLEMYTYHMPASIQEYVSRERNCEDIAMSFLVANATGAPPVWVKGKLFEIG-----------SSGISSLKGHSQRRNECLNDFVSLYGYMPL

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
614		28	71		1.0
656	50		50		1.0
671	12		87		0.992554
674		87		12	0.992554
684	10		90		0.90298
686			10	90	0.90298
693		90		10	0.90298
731	33	11		55	1.0
736	25			75	1.0
737	28			71	1.0
738	28			71	1.0
743	28			71	1.0
768		75		25	1.0
970			90	10	0.90298
971		90		10	0.90298
972	90		10		0.90298
973	90		10		0.90298
974	90	10			0.90298
975			90	10	0.90298
977			90	10	0.90298
980			90	10	0.90298
982	10			90	0.90298
998		10		90	0.90298
1025			80	20	0.999996
1050	25		75		1.0
1052		87		12	0.992554
1072	14	85			0.993533
1110		14	85		0.993533
1127		71	28		1.0
1138	14			14	0.984337
1140	85			14	0.993533
1173	50		50		1.0
1176		50		50	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain