SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2177

Length: 1744 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene2177 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative peptide/nitrate transporter [Arabidopsis thaliana] sp\|Q0WP01.1\|PTR9_ARATH RecName: Full=Probable peptide/nitrate transporter At1g22540 dbj\|BAF01148.1\| similar to peptide transporter [Arabidopsis thaliana] gb\|ACE79042.1\| At1g22540 [Arabidopsis tha	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	probable peptide nitrate transporter at1g22540-like	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	oligopeptide transport	GO:0006857	Biological Process	71%
Blast2go	transporter activity	GO:0005215	Molecular Function	71%
Blast2go	integral to membrane	GO:0016021	Cellular Component	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ03

Fln msg: Overlapping hits, possible frame ERROR between 1593 and 1592, Distance to subject end: 30 aas,

Fln protein: MIVGRDQQQLSEQTAMEEDPSSSFTGIVGDGSVDLRGRSVRRAHTGRWKASLFIIGVETAERLAYAGILSNMVTYLTDVLNESTATAAKNVNAWSGVASMLPFVGAFVADTYFGRYRTIAASSVIYLLGLILVTLSASVRSLHRSGIFFFSIYLVALGQGGHKPCLQAFGADQFEDGDPVEKKYKSSFFNYWYWGICFGTLLGVTVLLYIQDNVGWGLGFGIPAVTMAMALFTFLCGTRFYRHKLPVGSPLTRIVHVFVATFHKWNVSPPPQEEMKVAAAAEREGLKFGSRRQYLPTDQFKFLDKATVEDELDYECKTTRNWRLCTVQEVEEVKAVLGLTPIWMTCLIFGVVFAQSSTFFTKQGATMDRKIGKHFEIPAASVQCFISLTLILLLPIYDRIFVPIARNLTGNERGITFLQRIGTGMVISILSMIVAALTEIRRIKVAKDNGLIDMPNATIPLSIFLLLPQYILFGIADVFTMVGMQEYFYDQMPDTMKTLGIAVYLSVLGIGNxxLSSILISVTEKLSCRSEGSCWFVDNLNKAHLDYFYWLLASLSAINTCIYI

Protein Length: 565

Fln nts: ACAATCAGTGAAACAATCAGGAAGTGGGCGTTTAAGTACACTCTCCTCCCTGTT_-_ATGATTGTTGGAAGGGATCAACAGCAACTATCTGAGCAAACAGCAATGGAAGAGGATCCCTCATCTTCATTCACTGGTATTGTTGGAGATGGATCAGTTGATCTCCGTGGACGCTCTGTTAGGAGAGCTCATACTGGCCGATGGAAAGCATCACTCTTCATAATTGGAGTGGAGACAGCAGAAAGGCTAGCCTATGCAGGCATTCTTTCAAACATGGTAACTTACCTTACAGATGTTCTGAATGAAAGCACTGCTACTGCTGCAAAGAATGTGAACGCCTGGTCAGGTGTGGCGTCCATGCTTCCTTTCGTTGGAGCTTTTGTAGCAGATACATATTTTGGTCGATATCGGACCATTGCTGCGTCTTCTGTCATCTATTTGCTGGGTTTAATTTTGGTCACTTTATCGGCCTCTGTGAGGAGTTTGCATCGCTCTGGGATTTTCTTCTTCTCAATCTACTTGGTTGCTTTGGGGCAAGGAGGCCACAAACCCTGTCTACAAGCATTTGGTGCAGATCAATTTGAAGACGGCGATCCGGTAGAGAAAAAGTATAAGAGTTCATTCTTCAACTATTGGTATTGGGGTATTTGCTTTGGTACTCTTCTAGGAGTCACTGTACTCTTGTATATTCAGGACAATGTTGGATGGGGTCTGGGATTTGGCATTCCCGCCGTGACAATGGCGATGGCACTGTTTACCTTCTTGTGTGGGACAAGATTTTACCGACATAAACTGCCCGTTGGTAGTCCTCTCACTCGAATTGTCCATGTCTTTGTTGCAACGTTTCATAAGTGGAATGTTTCTCCTCCTCCTCAAGAAGAAATGAAAGTAGCTGCCGCTGCAGAAAGAGAAGGCTTGAAGTTTGGGTCAAGAAGACAGTATTTGCCTACTGATCAGTTTAAGTTTCTTGACAAAGCCACAGTTGAAGATGAATTAGACTACGAGTGCAAAACAACCCGTAATTGGCGACTATGCACAGTCCAAGAAGTTGAAGAGGTGAAAGCTGTTCTTGGCTTGACACCAATTTGGATGACATGTTTGATATTCGGGGTTGTCTTTGCACAATCTTCAACATTTTTCACAAAACAAGGCGCCACAATGGATAGAAAGATTGGAAAACATTTTGAGATCCCTGCTGCAAGCGTACAGTGTTTTATTAGCCTTACTCTCATTCTACTGTTGCCTATCTATGACCGCATCTTTGTTCCGATTGCAAGAAACTTGACAGGGAATGAACGTGGTATAACATTTCTGCAGAGGATAGGGACTGGCATGGTTATCTCCATTCTGTCAATGATTGTTGCTGCGTTGACAGAGATCAGAAGAATCAAGGTAGCAAAAGATAATGGACTCATAGATATGCCCAATGCAACAATTCCATTGAGCATTTTTCTGCTGCTTCCACAATATATCTTATTTGGCATAGCTGATGTATTTACAATGGTAGGAATGCAAGAGTACTTTTATGATCAGATGCCAGACACTATGAAAACCCTTGGTATAGCTGTGTATCTGAGTGTTTTAGGAATTGGTAATxxxxxxCTGAGCAGCATCCTTATTTCAGTTACTGAGAAGCTTAGTTGCAGAAGCGAAGGGAGTTGCTGGTTCGTAGACAACCTGAATAAAGCACATTTAGACTACTTTTATTGGCTTCTAGCATCTCTGAGTGCAATCAACACTTGTATTTACATT

Fln Alignment:

Contig2177___MEEDPSSSFTGIVGDGSVDLRGRSVRRAHTGRWKASLFIIGVETAERLAYAGILSNMVTYLTDVLNESTATAAKNVNAWSGVASMLPFVGAFVADTYFGRYRTIAASSVIYLLGLILVTLSASVRSLHRSGIFFFSIYLVALGQGGHKPCLQAFGADQFEDGDPVEKKYKSSFFNYWYWGICFGTLLGVTVLLYIQDNVGWGLGFGIPAVTMAMALFTFLCGTRFYRHKLPVGSPLTRIVHVFVATFHKWNVSPPPQEEMKVAAAAEREGLKFGSRRQYLPTDQFKFLDKATVEDELDYECKTTRNWRLCTVQEVEEVKAVLGLTPIWMTCLIFGVVFAQSSTFFTKQGATMDRKIGKHFEIPAASVQCFISLTLILLLPIYDRIFVPIARNLTGNERGITFLQRIGTGMVISILSMIVAALTEIRRIKVAKDNGLIDMPNATIPLSIFLLLPQYILFGIADVFTMVGMQEYFYDQMPDTMKTLGIAVYLSVLGIGNxLSSILISVTEKLSCRSEGSCWFVDNLNKAHLDYFYWLLASLSAINTCIYI
B8LQ03______________MEEDHSSSFSGFVEDGSVDLHGRSVSRAHTGRWKASFFVIGVEIAERFAFAGILANLVIYLTDVMGESTATAAKNVNVWSGVATMLPFVGAFVADSYLGRFWTIALSSVVYLLGLILVTLSASLRSLNRIWIFFFSIYLVALGQGGHKPCLEAFGADQFEENDPVEKKHKSSFFNYWYCGICMGTLLGVTVLLYIQDNVGWGLGFGIPAVTMAVALFIFLCGTRFYRHKLPGGSPLTRIIHVFVATFHKWNVSTSHQEKKKVAASAETGVLKFGSRRQYLPTDQFRFLDKATVEDELDYDCKTTRNWRLCTVQDVEEVKAVLGLSPIWMSCLIFGVVFAQSSTFFTKQGATMDRKIGK-FEIPPASLQSFINLTIILLLPVYDRIFVPIARNLTGNERGITFLQRIGTGMFISILSMIVAALAEIRRIKAAKDNGLIDMPKATIPLSISLLLPQYILFGLADVFTMVGMQEYFYDQMPDTMKTLGIAVYLSVLGVGSxLSSIIILVIEKLG----GSHWFVNNLNKAHLDYFYWLLASLSAINFCIYM

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1364	66		33		0.997452
1365	33			66	0.997452
1366		66	33		0.997452
1369	33	66			0.997452
1370		33		66	0.997452
1372		66	33		0.997452
1373	66	33			0.997452
1374	66	33			0.997452
1379		66	33		0.997452
1382		66	33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
877	888	GAG GAG GAG GAG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain