SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2171

Length: 2367 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene2171
AATGTACGAAGAAGAGGAGGGACCCAAAGGGCCTATTCGGTCGAAGCATGAGCTAGAGGTCCTGCCTCCTGTTCCTCCTGTAAATGTGGCACTGCAGCGTCATCACCAAATACAACCTGTTGGTGTGATTACTTCTGGTGCTAGGGGCTTCTGTAGTGGTGGAAGCCAGTGAATGCCATAGTGCACTAAATGAAGGTACAATACTATGGATAACAGAGAAAAGGCAGTCATTAGGTTTCATAGATGAAGTGTTTGGACCAGTGAAGACGCCATACTACATTGTTCGGTATAATACTATTGCTGATGTGCCTGATTATGTGAGGGAAGGGGTACATGTTTCGTATGTTCCAGAATATGCAAAGTTTGTACTAAAAAATGACCCAAGTTTGTACAGAAAAGGATATGATGCTTCTGGTGAACATGATGAAGAGCTTTCTGATGAAGTGGAGTTCTCGGATGATGACAAAGAGGCAGAGTACAAAAGAGAAAGATCACTGGTGAAGAGGGGATCCAATTCAAGAGAAAATCTCCAGGAAAAGAATTATGGAAGTCGTGGGAGAAAACAAGAGTTTGTGGATAGAAGGAAGAGAAAAGGTCCTGGTGGTCGCTTGCAACACAATTTGAACGGTGCAAATGGATCGAGGCATCAATCTCAGATGGGATTTTCTTCGAAGCAACCATTTCATAATAGTTCGTTTGGCTGGCCACCATCTGCAGCTGTCAACCAGACACAAAATTGCAATAGGCCTAGAGCCCCAACTCCATCCAGAGTCCCACCTGTCCAATCTCAATGTATGCGTCAGACTACTGGAAACAGCCTTATTCAACAACCTCAACTTTCAAGCTCCATAAGTGGTCCCTCAATACCACCCTCAACTCTGTTGGCATACTCTGGTGAACCAAGTCGAGGTTTAACTACGTTTGCAAGTGAACCTCCTCCTTGGGGAGCATGGAATACAAAGCCCAATCAAGAAGCTACTGAAGGGATGTGTCCTGCCCAGCCTCCTATTGCTGGTGAACATGTCCGTGATAGTAAATTTATGGCAAACCCAGTAAGTGTTGTTCATTCTGGGCCACTATATGATCAAGCCCAAGGGATCTGCTCTGGGCAGCAGCCTCCTGCTAAGCCTTTTCATGATCCATTGGGACAAAATCCGCAATCACAGACTTGTTCAAGGCCTCAGCATGATCCAGCTGGAGGGATTCAACCAGGGCAGCATTTTTCTAGGCCACCTTTTTCAGACTCTACTGGAGGTTTTCACCAAGTCCAGTCTCATGTTCTTGGTGCACCTATCCTTAATGGGAGCCAGATGAATTCCAACCTCATGAATTTCCCTTACAGACCAATGCATCATGCTTTTATGGGAGAACCAGCGCAATATAATAGCATTCATCCTAGCGTACCTAGTGGAACTTGGACTAGCGGACATTCTGGCCAAGTAGCTGGAGGGCCCCAAGTACCATCATTGGATGCAAATCAGGGGGCTGTCAACCCAATGCTGTTTAATCATGCACAAACTTGTGTTGGAGTTCCAGTTACACAAAATCCAGGATTGTATGCCAACATGGGAATGAATATTTGCAACATTGGATCTCTTCCTGGACAGAATATTCTTCCATGTCCCATGCCATGGGGACAGTTTGCACCGATGTTTCAGGGGAATCCAAATCAACAATTTCAAAGTGGCATTCAGGCAGACAGTGGGAGTGTTCCTTTCTCTCAGCCAAATAATATTTCTGGCAATCATTCCAATGGGAATGTTCCTTTCTCTCAGCCAAATAATATGTCTGCCAATCATTTCAATGGGAGTGTTCCTTTCTGTCAGACAAATAATATGTCTGGCAATAATTCCAGACCAGTCCTTCGGGTTGGGGACCCACCCCACTGCAGCCAATCATGGACATTCACGACCAAGTTAAATGGTTCTCAGCGGACTTTCTTTACTTTCTATTAGTTTGGATTGAATGCAGACTTCTATAGGCACTTTGCATAAGCCAATTTATACACACAACTTTGGCCCATCTTGTATCTTGATATTTAAGCCGAGTACATATTTATCTTGCAGCAGAAATAGTTTAGAGTTATACTGCTTATTTAAAAAAGAGAGTCTGGTGCATCAAATTTTGTTTTCTGTTATGTATATTTTTGTATTATCTGCAAGCTTGATTGTCCAGACATGATAGACAGTTGTTTCTGCTTCATGATGCACCATGTACTGGAACAATATAAGTACAACACATTCCGGGACAGTGAGGTATCACCAATTGAGTCTACTATTAATGAAGATAATATGTACGAGAGCACAGAAAATGTGTGAAGTATGCATTCTGTGCTTGAGCACCTTTAATATATCTTGTCTTAATAAT

Ace file of the UniGene sp_v2.0_unigene2171 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nuclear assembly factor 1 [Arabidopsis thaliana] gb\|AAF86533.1\|AC002560_26 F21B7.15 [Arabidopsis thaliana] gb\|AEE27583.1\| nuclear assembly factor 1 [Arabidopsis thaliana]	-	-	8.0e-38	34%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	67%
Blast2go	protein	-	-	4.18988e-43	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	4.18988e-43	62%
Blast2go	ribonucleoprotein complex	GO:0030529	Cellular Component	4.18988e-43	62%
Blast2go	plastid	GO:0009536	Cellular Component	4.18988e-43	62%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR008696	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9RW55

Fln msg: Separated hits, possible frame ERROR between 136 and 162, your sequence is shorter than subject: 652 - 786

Fln protein: MYEEEEGPKGPIRSKHELEVLPPVPPVNVALQRHHQIQPVGVITxxxxxxxxxxEASECHSALNEGTILWITEKRQSLGFIDEVFGPVKTPYYIVRYNTIADVPDYVREGVHVSYVPEYAKFVLKNDPSLYRKGYDASGEHDEELSDEVEFSDDDKEAEYKRERSLVKRGSNSRENLQEKNYGSRGRKQEFVDRRKRKGPGGRLQHNLNGANGSRHQSQMGFSSKQPFHNSSFGWPPSAAVNQTQNCNRPRAPTPSRVPPVQSQCMRQTTGNSLIQQPQLSSSISGPSIPPSTLLAYSGEPSRGLTTFASEPPPWGAWNTKPNQEATEGMCPAQPPIAGEHVRDSKFMANPVSVVHSGPLYDQAQGICSGQQPPAKPFHDPLGQNPQSQTCSRPQHDPAGGIQPGQHFSRPPFSDSTGGFHQVQSHVLGAPILNGSQMNSNLMNFPYRPMHHAFMGEPAQYNSIHPSVPSGTWTSGHSGQVAGGPQVPSLDANQGAVNPMLFNHAQTCVGVPVTQNPGLYANMGMNICNIGSLPGQNILPCPMPWGQFAPMFQGNPNQQFQSGIQADSGSVPFSQPNNISGNHSNGNVPFSQPNNMSANHFNGSVPFCQTNNMSGNNSRPVLRVGDPPHCSQSWTFTTKLNGSQRTFFTFY*

Protein Length: 653

Fln nts: AATGTACGAAGAAGAGGAGGGACCCAAAGGGCCTATTCGGTCGAAGCATGAGCTAGAGGTCCTGCCTCCTGTTCCTCCTGTAAATGTGGCACTGCAGCGTCATCACCAAATACAACCTGTTGGTGTGATTACTTCxxxxxxxxxxxxxxxxxxxxxxxxxxxGGAAGCCAGTGAATGCCATAGTGCACTAAATGAAGGTACAATACTATGGATAACAGAGAAAAGGCAGTCATTAGGTTTCATAGATGAAGTGTTTGGACCAGTGAAGACGCCATACTACATTGTTCGGTATAATACTATTGCTGATGTGCCTGATTATGTGAGGGAAGGGGTACATGTTTCGTATGTTCCAGAATATGCAAAGTTTGTACTAAAAAATGACCCAAGTTTGTACAGAAAAGGATATGATGCTTCTGGTGAACATGATGAAGAGCTTTCTGATGAAGTGGAGTTCTCGGATGATGACAAAGAGGCAGAGTACAAAAGAGAAAGATCACTGGTGAAGAGGGGATCCAATTCAAGAGAAAATCTCCAGGAAAAGAATTATGGAAGTCGTGGGAGAAAACAAGAGTTTGTGGATAGAAGGAAGAGAAAAGGTCCTGGTGGTCGCTTGCAACACAATTTGAACGGTGCAAATGGATCGAGGCATCAATCTCAGATGGGATTTTCTTCGAAGCAACCATTTCATAATAGTTCGTTTGGCTGGCCACCATCTGCAGCTGTCAACCAGACACAAAATTGCAATAGGCCTAGAGCCCCAACTCCATCCAGAGTCCCACCTGTCCAATCTCAATGTATGCGTCAGACTACTGGAAACAGCCTTATTCAACAACCTCAACTTTCAAGCTCCATAAGTGGTCCCTCAATACCACCCTCAACTCTGTTGGCATACTCTGGTGAACCAAGTCGAGGTTTAACTACGTTTGCAAGTGAACCTCCTCCTTGGGGAGCATGGAATACAAAGCCCAATCAAGAAGCTACTGAAGGGATGTGTCCTGCCCAGCCTCCTATTGCTGGTGAACATGTCCGTGATAGTAAATTTATGGCAAACCCAGTAAGTGTTGTTCATTCTGGGCCACTATATGATCAAGCCCAAGGGATCTGCTCTGGGCAGCAGCCTCCTGCTAAGCCTTTTCATGATCCATTGGGACAAAATCCGCAATCACAGACTTGTTCAAGGCCTCAGCATGATCCAGCTGGAGGGATTCAACCAGGGCAGCATTTTTCTAGGCCACCTTTTTCAGACTCTACTGGAGGTTTTCACCAAGTCCAGTCTCATGTTCTTGGTGCACCTATCCTTAATGGGAGCCAGATGAATTCCAACCTCATGAATTTCCCTTACAGACCAATGCATCATGCTTTTATGGGAGAACCAGCGCAATATAATAGCATTCATCCTAGCGTACCTAGTGGAACTTGGACTAGCGGACATTCTGGCCAAGTAGCTGGAGGGCCCCAAGTACCATCATTGGATGCAAATCAGGGGGCTGTCAACCCAATGCTGTTTAATCATGCACAAACTTGTGTTGGAGTTCCAGTTACACAAAATCCAGGATTGTATGCCAACATGGGAATGAATATTTGCAACATTGGATCTCTTCCTGGACAGAATATTCTTCCATGTCCCATGCCATGGGGACAGTTTGCACCGATGTTTCAGGGGAATCCAAATCAACAATTTCAAAGTGGCATTCAGGCAGACAGTGGGAGTGTTCCTTTCTCTCAGCCAAATAATATTTCTGGCAATCATTCCAATGGGAATGTTCCTTTCTCTCAGCCAAATAATATGTCTGCCAATCATTTCAATGGGAGTGTTCCTTTCTGTCAGACAAATAATATGTCTGGCAATAATTCCAGACCAGTCCTTCGGGTTGGGGACCCACCCCACTGCAGCCAATCATGGACATTCACGACCAAGTTAAATGGTTCTCAGCGGACTTTCTTTACTTTCTATTAGTTTGGATTGAATGCAGACTTCTATAGGCACTTTGCATAAGCCAATTTATACACACAACTTTGGCCCATCTTGTATCTTGATATTTAAGCCGAGTACATATTTATCTTGCAGCAGAAATAGTTTAGAGTTATACTGCTTATTTAAAAAAGAGAGTCTGGTGCATCAAATTTTGTTTTCTGTTATGTATATTTTTGTATTATCTGCAAGCTTGATTGTCCAGACATGATAGACAGTTGTTTCTGCTTCATGATGCACCATGTACTGGAACAATATAAGTACAACACATTCCGGGACAGTGAGGTATCACCAATTGAGTCTACTATTAATGAAGATAATATGTACGAGAGCACAGAAAATGTGTGAAGTATGCATTCTGTGCTTGAGCACCTTTAATATATCTTGTCTTAATAAT

Fln Alignment:

Contig2171___EEEEGP---KGPIRSKHXXXXXXXXXXXXVALQRHHQIQPVGVITSxxxxxxxxxEASECHSALNEGTILWITEKRQSLGFIDEVFGPVKTPYYIVRYNTIADVPDYVREGVHVSYVPEYAKFVLKNDPSLYRKGYDASGEHDEELSDEVEFSDDDKEAEYKRERSLVKRGSNSRENLQEKNYGSRGRKQEFVDRRKRKGPGGRLQHNLNGANGSRHQSQMGFSS
B9RW55______________EEEEGTGLMKGPIRSQNELKFLPPVPPVDVTLQPHHQVLPVGVVLSxxxxxxxxxEGVEKHNPLNEGSILWITEKRSPLGLVDEIFGPVQNPYYVVRYNSESEVPSGISQGTRISFVAEFANHVL-NEKNLYKKGYDASGENDEELSDEAEFSDDEKEAEYMRMKKMSKRGINGQTVGNKKN--SRTKDKNRNGNRKNVGPLGQHASMCGGQLPPPNQNQQNTSS

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
1207	12			87	0.992554
1208			87	12	0.992554
1216	33		66		1.0
1561	11	88			0.923564
1564			88	11	0.923564
1616	12		87		0.992554
1618			87	12	0.992554
1619		87	12		0.992554
1620	12			87	0.992554
1628	11			88	0.923564
1630			11	88	0.923564
1631			11	88	0.923564
1632			88	11	0.923564
1635	88	11			0.923564
1636			11	88	0.923564
1637	11			88	0.923564
1638		11		88	0.923564
1639			11	88	0.923564
1640	28		71		1.0
1641		28		71	1.0
1642	28		71		1.0
1650			60	40	1.0
1682		20		80	0.995493
1744		75		25	0.996473
2094			85	14	0.993533
2095			14	85	0.993533
2100	14			85	0.993533
2102		14	85		0.993533
2104	14		85		0.993533
2105	14			85	0.993533
2106		85	14		0.993533
2107			14	85	0.993533
2112	14			85	0.993533
2113		14	85		0.993533
2125			16	83	0.994512
2126	16	83			0.994512
2127	83		16		0.994512
2129	16	83			0.994512
2130		16		83	0.994512
2132			16	83	0.994512
2133		16	83		0.994512
2134	83	16			0.994512
2137		83	16		0.994512
2138		83	16		0.994512
2140	83	16			0.994512
2142		16		83	0.994512
2236		80		20	0.995493
2237	80			20	0.995493
2239		20	80		0.995493
2240	80			20	0.995493
2245	80	20			0.995493
2250	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain