SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2166

Length: 1093 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2166

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	uncharacterized protein [Arabidopsis thaliana] emb\|CAB66927.1\| putative protein [Arabidopsis thaliana] gb\|ABE77408.1\| At3g49890 [Arabidopsis thaliana] gb\|AEE78602.1\| uncharacterized protein [Arabidopsis thaliana]	-	-	1.0e-06	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	uncharacterized protein	-	-	0.0	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACA1

Fln msg: your sequence is longer than subject: 263 - 220

Fln protein: MGSSSSDEDGDENWRAAVNSVAVDSSAIFRNGSNQNGTGHSKVQDIGGGEDGNSSNLKSCQARAQDLLHRHLDKTLTIIASPESSSHVCNSTIDDPEDEIRLFRRAPRGITVKPVETLERLIPRKKPRIPPRKEIDEKSPEFQSQIQSVAVDGAIIIEKAEKEKARALVRLQEKEAAAQAAAKKEEERVALLKQQRGEEWLPSIASEMLSDIIAKKRELQDRCSNLEKKHSNRAYLNGIVHTNGTHQESVKTHPDKKLSEAR*

Protein Length: 264

Fln nts: ATGGGGATGATGATGGGCGTCGTGACCTTGGCTGTCACTAAATTCCAAAGCAGGGAAATCGGCTGATCTGCGATTCGAATCGTGGAAACGGTTATCGAGAGCAAATCCCCGACACTAAGTG_-_ATGGGTTCGTCTAGCAGCGATGAAGACGGTGATGAAAATTGGAGAGCAGCTGTGAACAGTGTTGCAGTAGACTCTTCTGCCATTTTCAGAAACGGGTCTAATCAGAATGGTACTGGACATTCAAAAGTACAGGACATTGGAGGGGGGGAAGATGGAAACTCCAGCAATCTCAAGTCATGTCAGGCTCGAGCCCAAGATCTCCTTCATAGGCATCTAGACAAGACTTTGACTATAATTGCCAGTCCAGAGTCATCATCTCACGTTTGCAACAGCACAATAGATGATCCCGAGGATGAGATTCGTCTTTTTAGGCGGGCACCTCGTGGGATCACTGTCAAACCTGTAGAAACACTAGAAAGGTTGATCCCTAGAAAGAAACCAAGAATACCCCCAAGAAAAGAGATCGATGAGAAATCACCAGAGTTTCAGTCTCAAATTCAGTCTGTTGCTGTTGATGGGGCTATTATTATAGAGAAGGCAGAGAAGGAAAAAGCAAGGGCATTGGTCAGATTGCAAGAAAAGGAAGCAGCAGCTCAGGCAGCAGCAAAAAAAGAAGAAGAGAGAGTTGCTTTGTTGAAGCAACAAAGGGGAGAAGAATGGCTTCCTTCTATTGCCAGTGAAATGTTAAGTGATATAATTGCCAAAAAAAGGGAGTTGCAAGATCGTTGTTCAAATCTAGAGAAGAAGCATTCAAACAGAGCTTACTTGAATGGTATAGTTCATACAAATGGGACACATCAAGAGAGTGTGAAGACACATCCAGATAAGAAATTGAGTGAGGCAAGATGA___ATGGGAATCAGGAGAAGAAAGAATCACAGATAAAAAGTCTTCTACACTGTCTACATCATAGATAAAACAATTGTTTTCTTCCATGCATGTGATTCACTATGTTTTACAATCTTAATTTAAATACCTCATATGATTTTGTCAATCCATGATCCGTGGGATTCCAAAATTCTTCTTTGACACATT

Fln Alignment:

Contig2166___NWRXXXXXXXXXXXXIFRNGSNQNGTGHSKVQDIGGGEDGNSSNLKSCQARAQDLLHRHLDKTLTIIASPESSSHVCNSTIDDPEDEIRLFRRAPRGITVKPV-ETLERLXXXXXXXXXXXXXXDEKSPEFQSQIQSVAVDGXXXXXXXXXXXXRALVRLXXXXXXXXXXXXXXXXRVALLKQQRGEEWLPSIASEMLSDIIAKKREL
D5ACA1______________NWRAAVNSVAVDSSAIFRNGSNQNGTGHSKLSGIDGGKEGKSSNLKSCQARAQDLLHRYLDKTLTIIASPESPSHVCKSTIDDAEDEIRLFRRAPRGITVKPVAETPETLIPRKKPRIPPRKDIDEKSVEFQSQIQSVAVDGAIIIAKAEKEKTRALVRMQEKEAAAQAAVKKEEERVALLKQQRGEKWLPSIASEMFGNTIAKIKKL

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
284		83		16	0.994512
285	83			16	0.994512
288	83		16		0.994512
289	83	16			0.994512
291		83	16		0.994512
296		16	83		0.994512
452		25	75		0.996473
453	75			25	0.996473
455		80	20		0.995493
456	80		20		0.995493
474	80		20		0.995493
553	87	12			0.992554
558		87	12		0.992554
560	87	12			0.992554
561	87	12			0.992554
565	87			12	0.992554
570	12		87		0.992554
571		14		85	0.993533
573		14	85		0.993533
574	14	85			0.993533
621	85		14		0.993533
669		16	83		0.994512
688	83	16			0.994512
690	83	16			0.994512
693	16			83	0.994512
694		16	83		0.994512
698			16	83	0.994512
700		16		83	0.994512
703	80	20			0.995493
705		20	80		0.995493
706		80		20	0.995493
707	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain