SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2151

Length: 1520 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2151

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protease Do-like 8 [Arabidopsis thaliana] sp\|Q9LU10.1\|DEGP8_ARATH RecName: Full=Protease Do-like 8, chloroplastic; Flags: Precursor dbj\|BAA98101.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL08237.1\| AT5g39830/K13H13_10 [Arabidopsis thaliana] gb	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	35%
Blast2go	protease do-like 8	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	82%
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	photosystem II repair	GO:0010206	Biological Process	82%
Blast2go	proteolysis	GO:0006508	Biological Process	82%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	82%
Blast2go	translational elongation	GO:0006414	Biological Process	82%
Blast2go	translation elongation factor activity	GO:0003746	Molecular Function	82%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	82%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	82%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S1/S6, chymotrypsin/Hap	IPR001254	-	-
Sma3	PDZ domain	IPR001478	-	-
Sma3	Peptidase S1C, HrtA/DegP2/Q/S	IPR001940	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVJ7

Fln msg: your sequence is shorter than subject: 298 - 463

Fln protein: EGNGSGVVWDEQGHIVTNYHVIGNALSKNPRRDQVVARVNILAFDGVQKSFEGTLVGADRTKDLAVLKVDAPQEILRAVESGQSSKLKVGQRCFAIGNPFGFDHTLTAGVLSGLNREIFSQAGVTISGGIQTDAAINPGNSGGPLLDSKGKLIGINTAIFTQTGTSAGVGFAIPSDAVLKIVPQLIQSGKVMRPGLNVDIAPEVIANQLNVRSGALVLSVPENSAAAKAGMIPTKRGFAGKIILGDVIVSIDNHTIKNASYLSKILDDYVVGDKVVLKVQRINGVVEIPITLEESII*

Protein Length: 299

Fln nts: GAAGGAAATGGTTCTGGAGTAGTCTGGGATGAGCAAGGGCATATTGTGACCAACTATCATGTGATTGGTAATGCCCTCTCAAAAAATCCCAGGCGTGATCAAGTGGTTGCCCGGGTTAATATTCTTGCATTTGATGGGGTTCAAAAGAGTTTTGAGGGTACATTGGTTGGTGCAGACCGCACAAAAGATCTTGCTGTCTTGAAGGTGGATGCCCCTCAGGAGATCCTGCGGGCAGTTGAATCTGGGCAGTCCTCTAAACTTAAAGTAGGTCAACGATGCTTTGCAATTGGTAACCCATTTGGTTTTGATCACACTTTGACTGCTGGGGTACTTAGCGGATTGAACCGTGAGATATTTAGTCAAGCAGGCGTGACTATAAGTGGGGGTATTCAGACTGATGCAGCCATCAATCCTGGCAATAGTGGTGGTCCATTACTAGATTCCAAAGGAAAATTGATTGGGATTAACACAGCGATATTTACTCAAACAGGAACATCAGCAGGAGTAGGTTTCGCTATTCCAAGTGACGCAGTCCTCAAGATTGTGCCTCAGTTGATACAATCTGGGAAGGTAATGCGTCCAGGATTAAATGTAGATATAGCCCCTGAGGTAATTGCAAATCAATTAAACGTGAGAAGTGGAGCTCTTGTTCTATCGGTTCCGGAAAACAGTGCTGCAGCAAAGGCAGGGATGATTCCAACAAAGAGAGGATTTGCTGGTAAAATAATTCTTGGTGATGTGATTGTTTCCATCGACAATCATACGATAAAAAATGCATCATATCTTTCCAAAATTTTGGATGATTACGTTGTGGGGGACAAAGTAGTCTTAAAGGTTCAGCGAATCAATGGTGTGGTAGAAATACCAATTACATTGGAAGAGAGCATAATATAA___CAAGCCAATCTCACCCATTTTAACTTGCTGCAGTGGTACTAAAATTGCTGTTCCTCTTTCATTAATCAAGCATGAGAAGCATCCATATCATGATTTCGATTTATTTCTCAATTTGAACTGCCATTAACTTGAAACAATGATTTAAAAATTTATCTTTCTGGATATTTTACTATTTTGGAAGCATTTTCGTACTGTGGCACATTTGGTTTATGAGAACTTGAGAGCATCTAGCGAGAAAGCTCTGCTTGTGCTGGATGAAATGAAAAGACAGGAACCTGTAATTGCAGTTGGTAAAGCTGTCTTGAGTTTTTGACCGCAATCACCATTTCTTCATTGGAGCAAAGCATTATATAAAAATGCAAGGGATACAAAAACCATTTTTCCTCTACGTCAATACTCAAAATCTTTGTCAGTTACAGCATTCAGTCAAAGTATTTGGGACCTTATCATGAATATTACAGCAATTATTTTTGAAATTTCTGGCAGACGTAATAACTTTTCTGCTATATAGAATGTAAAGAACATTATTGTGCTAAGATAGTGGATAATTATCTTATTTGCATCCTAATCTTGAGCTTTTCATCAAAGATGGACCATGGTATTTACAAGAAATGTAAAGTCGATAT

Fln Alignment:

Contig2151___GSGVVWDEQGHIVTNYHVIGNALSKN-PRRDQVVARVNILAFDGVQKSFEGTLVGADRTKDLAVLKVDAPQEILRAVESGQSSKLKVGQRCFAIGNPFGFDHTLTAGVLSGLNREIFSQAGVTISGGI-------QTDAAINPGNSGGPLLDSKGKLIGINTAIFTQTGTSAGVGFAIPSDAVLKIVPQLIQSGKVMRP--GLNVDIAPEVIANQL--------NVRSGALVLSVPENSAAAKAGMIPTKRGFAGKIILGDVIVSIDNHTIKNASYLSKILDDYV-VGDKVVLKVQRINGVVE-IPITLEES
A9NVJ7______________GSGTIIDSNGTILTNAHVVAEFTSAGVPYKGKVVVTLQ----DG--RTFDGEVINADFHTDIAVVRINTKVP-LPAAKLGSSSKLRPGDWVIALGCPLSLQNTVTAGIVSYVDRKS-SDLGL---GGIRREYYYLQTDCAINEGSSGGPLVNLDGEVIGINT---MKALAADGVSFAIPIDSVIKTVEHFKKHGRVVRPWLGLKMLELNELIIAQLKERDPSFPDVTEGVLVPQVTPGSPAHRSGFRP-----------GDVVVQFDGKPTKSIKEIVEIMGDKVGVAFKVIVK--RSNNVQETLTIVPEEA

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1276			20	80	0.995493
1277	20	80			0.995493
1278		80	20		0.995493
1280	20	80			0.995493
1282			16	16	0.988813
1285		16	83		0.994512
1287	16	83			0.994512
1288	83		16		0.994512
1291	80		20		0.995493
1315		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain