SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2149

Length: 1171 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2149

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	APETALA2-related transcription factor 2 n=1 Tax=Picea abies RepID=Q9FV33_PICAB	-	-	84%
FL-Next	tr=APETALA2-related transcription factor 2; Picea abies (Norway spruce) (Picea excelsa).	-	-	90%
Blast2go	ap2 domain-containing transcription factor	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	71%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	71%
Blast2go	DNA binding	GO:0003677	Molecular Function	71%
Blast2go	nucleus	GO:0005634	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9FV33

Fln msg: Distance to subject end: 236 aas, atg_distance in limit (1-15): atg_distance = 6, W2: There is no M at the beginning, your sequence is shorter than subject: 389 - 633

Fln protein: TSSIEPVGEITPRSSEETESACVEAATVTHIQSNNEKRRRAPLRSEMTESGTSVSSVVNSITCNENINSLEHEASSKAMELDADVISSNSTQVPPSNEGNHKIFGFSLKIETRNLISRGNLLNAIANDEQQKDPACVTRHFFPLHNGEASQVLMPTECTGGNPFIESHWTPVTSRQPENAETRKKQPENNKPVKKSRRGPRSRSSQFRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFTLTDYQEDLDQTSQLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEEEAARAYDKAAIRCNGKEAVTNFDPSLYEKEILEERRENQTSTGCDQNLDLSLGIGHV

Protein Length: 390

Fln nts: ACACATCTAGTATTGAACCGGTCGGGGAAATCACGCCCCGGAGTTCCGAGGAGACTGAATCTGCTTGTGTTGAAGCGGCCACGGTCACGCACATTCAGAGCAATAACGAAAAGAGACGTAGAGCGCCACTTCGGTCTGAGATGACCGAGTCTGGAACCTCCGTCTCATCTGTAGTGAACTCCATCACCTGCAATGAAAATATTAATTCCCTTGAACACGAGGCCTCCAGCAAGGCTATGGAATTGGATGCCGATGTAATCTCGTCAAATTCCACACAAGTCCCTCCGTCAAATGAAGGAAATCACAAGATTTTTGGGTTCTCTCTCAAAATCGAGACCCGAAACCTGATTTCCCGTGGAAATTTATTAAATGCCATAGCAAATGACGAACAGCAAAAGGATCCTGCCTGCGTGACACGGCATTTTTTCCCTCTTCATAACGGGGAGGCTTCTCAAGTCCTAATGCCCACGGAATGTACTGGAGGAAATCCGTTTATAGAATCCCACTGGACTCCAGTAACTTCCCGTCAACCAGAGAATGCAGAAACTCGGAAAAAGCAACCGGAAAATAACAAGCCGGTCAAGAAAAGCAGACGAGGACCGCGATCCAGAAGCTCGCAGTTTCGTGGGGTGACCTTCTACAGGCGGACTGGACGTTGGGAATCACACATATGGGATTGTGGAAAACAAGTCTATCTGGGTGGATTTGATACGGCTCATGCAGCTGCGAGAGCTTACGACAGGGCAGCTATCAAGTTTCGAGGAGTTGAAGCTGATATAAATTTTACTCTCACCGACTATCAAGAAGATTTAGACCAGACGAGCCAGCTCTCTAAAGAAGAGTTTGTGCATATTCTCCGTCGTCAAAGTACTGGTTTCTCTCGTGGAAGTTCCAAATATAGAGGCGTTACCCTGCACAAGTGTGGGCGATGGGAAGCCAGAATGGGTCAATTCCTAGGGAAAAAGTATATATATTTGGGATTATTTGACAGTGAAGAGGAGGCTGCAAGGGCATATGATAAAGCTGCTATCAGGTGCAATGGAAAGGAGGCAGTAACGAACTTTGATCCTAGCTTATATGAAAAAGAAATTCTTGAAGAAAGAAGAGAGAATCAGACTTCTACAGGTTGTGACCAGAATTTGGACCTTAGCCTTGGGATTGGTCATGTTCC

Fln Alignment:

Contig2149___TSSIEPVGEITPRSSEETESACVEAA--TVTHIQSNNEKRRRAPLRSEMTESGTSVSSVVNSITCNENINSLEHEASSKAMELDADVISSNSTQVPPSNEGNHKIFGFSLKIETRNLISRGNLLNAIANDEQQKDPACVTRHFFPLHNGEASQVLMPTECTGGNPFIESHWTPVTSRQPENAETRKKQPENNKPVKKXXXXXXXXXXQFRGVTFYRRTGRWESHIWDCGKQVYLGGFDTXXXXXXXXXXXXIKFRGVEADINFTLTDYQEDLDQTSQLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEEEAARAYDKAAIRCNGKEAVTNFDPSLYEKEILEERRENQTSTGCDQNLDLSLGIGHV
Q9FV33______________TSSIEPVGKIAPRSSEETESVCVEAAAATVTHIQSNNETRRRAPFRSEMTESGTSISSVVNSIACNENINSLEHEASSKAVELDGDVLSSNSTQVPRSNEGNHKIFGFSLKIETQNLTSRGNLLNVKANDEQQKDPACVTRHFFPLHNGQPSEVLMPTECTGGNPFTESHWTTVTSRLPESTEPRKKQAENNKPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFTLTDYQEDLDQTSKLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEEDAARAYDKAAIRCNGKDAVTNFDPSSYENEILEEGRESQTSTGFDQNLDLSLGIGHV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain