SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2121

Length: 3543 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene2121
CGTCGTGACCTTGGCTGTCACTCATTGGGTTGTTTCTAAGGCAGACGATGATGAGGTAGTTGAAACAAGTCATGTTGAAGATGCTTTTGTAGAAGCTTTAAAATCAAAAGCTAATTCTCCACCACAAGAGATCTTGCTGAGGATAAAAAATGAGTTGACATTAAAAGAACGAGCTGACCAAAGCACCTTTTTTGTCTACAAGCTGGGATTGTCTAGAATGCAACCTTGTCTCTTGATGAATGGTCTTGTTTATGGATCCAGCCAGGCACAAGATGCAGCCTTACAGGCTATGAATGAAGATCTTATGAAACTTCAGGAGGGGGTGTATTATGGACATATTAATTCCCGTACAGATGTTCTGGAAAAATTCCTTTCAGAGAGTGGTCATCCTAGATACAATCCGCATATTATTCGAGAGGGAAAGGATCATCAAAAGTTTGTGTCCCTTGCTACATCAGTTTTGAAGAGGGATTCAGTGGTGGTGAAACTTCAATATTTACATTCTCCAGAAACTGAAGATGACATGAAGCCAGTTACCCATCTTCTCGCTGTTGATCTTACCTCAAAGAGAGGGTTGAAATTTCTTCGTCATGGACTTCGCTATCTGTTGGATGGAACCAAAAGGGCACGTATTGGAATATTATATAACATTGATAATCCAGTTTCATTTTCTCAAGGATCTCCTGTCTTGCTTCTTGTCAAAGTTATTGATTCTACTGCATCATCTTTCAGGTACCATGCCAAGGCTTTAGAATTTCTAAACCAGTTAATGATTTGGTATGAAGCACAACATTTATATAGTTCACAAACAAGTAATACCAATGTCGAAGCTTTTATTGAAGAAGTTGCTAAGCTGGCTGAAGCAAATGATTTGAAGTCAGATCGCTTGAGGTCTGCACTGTCAGAAATCTCATGGGACTCTTTCAAGGATTATTTGCAAAGGGTTTCTGGCTTTTTATCGTCAGAGTTTGGACTTAGGTCAGGCGATAATGCTGTCATTACAAATGGAAGGGTGGTCCTTCACAAAGAAGACAGTTTTGTCACTGATGATTTGAAGCTTCTGGAAACTGTAGAATATGATAGAAGAATCAAACCTGTAGCAACTATAATTGAGCAAGTTGAGTGGGAAGGAGTTGATCCTGATGACCTAACAAGTGATTTTCTTAGTGATGCAATAATGGCAATTTCATCTGCAATGGCTATTCGTTCCCGAGGTGCTGATAATGCTCATTTTGAAGTTCTAAATGCAAAATACAGTGCTGTTATCCTGGAGGAGGAGAATGCCATTATACACGTTGATTGCTGTGATTGATCCTTTGAGCTCCTCTGGTCAAAAGATTGCTCCACTTCTTCGCCTACTACAGAGATGGTTTCAACCTAGTATGCGGATTGTTATGAACCCTGTGAGCTCTCTTGCTGACCTTCCACTGAAGAACTTCTACAGATATGTTATTCCATCAAAGGATAATTTATATTCTGATGGTTCATCAATGAATGGTCCTACTGCTTGGTTTTCAAACATGCCCTTAGCTAAAACTTTAACGATGAATTTGGATGTTCCTGAGCCATGGCTTGTTGAACCTGTCATTGCAATTCATGATTTAGACAATATTGTTCTTGAGAATCTCGGAGATGCAAGGACATTAGTGGCTGTTTTTGAGCTGGAGGCACTTGTTTTAACTGGGCATTGCTCAGAAAAAAACCATGAACCACCTCGGGGTCTTCAATTGCTTCTGGGGACGAAATTGAGGCCGCACATGGTTGATACTGTTGTGATGGCTAATTTGGGCTATTGGCAGCTTAAAGCTTCTCCTGGTGTGTGGACTCTACAACTTGCTCCAGGAAGATCTGCTGACCTTTACACGTTAGAAGGGACACGTGAAGGAACCGAGGAGGGCCCTAAGACGAAAAGGATAGTAATTGACAATTTAGGAGTACATTTAATTCACCTCAACGTAGTGAAGAAGAAAGGAAAAGAGAAGGAACAAATACTTATTAATGCAGATGAGATTGATGATGATGGTCCCTCACAGGAAGGAAAGGGGGTAAGCAGAAGGGATGGAATAAAGGATTTCTAAAATGGGCATCTGGTTTGATTGGTGGTGAAGACAAGCAGATAGATACAAATAGGCATTCACCTGTTCAAGGGCTGATGGGAAGGCATGGGGAAACAATCAATATTTTCTCAATTGCTTCCGGGCATTTGTATGAACGCTTTCTTAAAATTATGATATTAAGTGTGCTTAAGAACACCAATCGACCAGTAAAGTTTTGGTTCATCAAGAATTATCTATCTCCACAATTCAAGGACGTTTTACCTCATATGGCAAGGGAATATGGATTTGAATATGAGCTTATTACATACAAATGGCCATCATGGTTGCATAAGCAGACAGAAAAACAGCGAATCATATGGGCTTACAAAATTTTGTTTCTAGATGTCATTTTCCCACTTTCATTGAAAAAGGTTATATTCGTAGATGCGGATCAAATTGTTAGGGCTGATATGGGGGAGTTATATGATATGGATGTCAAGGGGAAGCCTCTTGCATATACACCATTTTGTGATAACAATAAGGAAATGGATGGCTATAAATTCTGGAAACAGGGTTTCTGGAAAGACCATCTACGTGGCAAGCACTACCATATTAGTGCCTTGTATGTTGTGGATTTGGACAAATTTCGTCAAACTGCTGCTGGAGATACATTGCGGGTATTTTATGAGACATTAAGTAAAGATCCAAACAGTCTCTCAAACCTTGATCAGGATCTTCCAAATTATGCTCAACATACAGTACCGATATTCTCACTGCCCCAGGAATGGTTGTGGTGCGAGTCTTGGTGTGGAAATGCTACAAAATCCAAAGCCAAGACCATTGATTTGTGCAATAATCCAATGACTAAGGAGCCTAAGCTACAGGGTGCCAGGCGCATTGTTGCTGAATGGCCAGCACTGGATGAAGAGGCAAGGAGATTTACTGCAAAATTCCTTGGTGAAGAGCTCCAACCCCAAACAGAGGAACCACGACAAGATAACCTACCAGAGCACGACAGCGATGGCGATTTAAAATCTGATGCTAACCTGGGAGATGACAACAGGGATGACTATTTAGAATCTCATGCTGATCTACCAGACGACAATAGGGATGATGATTTAGAATCTCATGCTGAGCTGTAAAAATATGTTCTTCCAATGAATTTTGGTTCAATTTTTTCTGTAATGAGTCGTTTTAAGAGCAAACATTTTATTTATAACATGTGAAAATGGTAGAGGGTACACTGAAAGGACAGTTTGATTTACATCACAATTCTTCATTTACTTGTTTATTCATTTATTCTATTTAAAGGTAATTCTGGTTGTTGCGGTGGCTCCAGTTTCTCCACCCATGTCTTTCATAAGACGTAAAATGATGGATCGCAATTTATTATGATGCACTCTCAATAAGTCTACTCCTGCAATTTAAATTCTAGCTGTCGGTGTCACGTGTGCACCTCACTGGGCAAAGTTACGGTAGGTTTGTTACCTATAAGTAGGGGATTATA

Ace file of the UniGene sp_v2.0_unigene2121 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucose:glycoprotein glucosyltransferase n=3 Tax=Arabidopsis RepID=F4I8G1_ARATH	-	-	78%
FL-Next	sp=UDP-glucose:glycoprotein glucosyltransferase; Arabidopsis thaliana (Mouse-ear cress).	-	-	47%
Blast2go	udp-glucose:glycoprotein glucosyltransferase	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	plant-type hypersensitive response	GO:0009626	Biological Process	83%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	83%
Blast2go	defense response signaling pathway, resistance gene-independent	GO:0010204	Biological Process	83%
Blast2go	protein glycosylation	GO:0006486	Biological Process	83%
Blast2go	carbohydrate biosynthetic process	GO:0016051	Biological Process	83%
Blast2go	anthocyanin metabolic process	GO:0046283	Biological Process	83%
Blast2go	UDP-glucose:glycoprotein glucosyltransferase activity	GO:0003980	Molecular Function	83%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	UDP-glucose:Glycoprotein Glucosyltransferase	IPR009448	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q0WL80

Fln msg: Separated hits, possible frame ERROR between 1300 and 1302, your sequence is shorter than subject: 1023 - 1613

Fln protein: VVTLAVTHWVVSKADDDEVVETSHVEDAFVEALKSKANSPPQEILLRIKNELTLKERADQSTFFVYKLGLSRMQPCLLMNGLVYGSSQAQDAALQAMNEDLMKLQEGVYYGHINSRTDVLEKFLSESGHPRYNPHIIREGKDHQKFVSLATSVLKRDSVVVKLQYLHSPETEDDMKPVTHLLAVDLTSKRGLKFLRHGLRYLLDGTKRARIGILYNIDNPVSFSQGSPVLLLVKVIDSTASSFRYHAKALEFLNQLMIWYEAQHLYSSQTSNTNVEAFIEEVAKLAEANDLKSDRLRSALSEISWDSFKDYLQRVSGFLSSEFGLRSGDNAVITNGRVVLHKEDSFVTDDLKLLETVEYDRRIKPVATIIEQVEWEGVDPDDLTSDFLSDAIMAISSAMAIRSRGADNAHFEVLNAKYSAVILEEENAIIHVxxAVIDPLSSSGQKIAPLLRLLQRWFQPSMRIVMNPVSSLADLPLKNFYRYVIPSKDNLYSDGSSMNGPTAWFSNMPLAKTLTMNLDVPEPWLVEPVIAIHDLDNIVLENLGDARTLVAVFELEALVLTGHCSEKNHEPPRGLQLLLGTKLRPHMVDTVVMANLGYWQLKASPGVWTLQLAPGRSADLYTLEGTREGTEEGPKTKRIVIDNLGVHLIHLNVVKKKGKEKEQILINADEIDDDGPSQEGKGVSRRDGIKDF*NGHLV*LVVKTSR*IQIGIHLFKG*WEGMGKQSIFSQLLPGICMNAFLKL*Y*VCLRTPIDQ*SFGSSRIIYLHNSRTFYLIWQGNMDLNMSLLHTNGHHGCISRQKNSESYGLTKFCF*MSFSHFH*KRLYS*MRIKLLGLIWGSYMIWMSRGSLLHIHHFVITIRKWMAINSGNRVSGKTIYVASTTILVPCMLWIWTNFVKLLLEIHCGYFMRH*VKIQTVSQTLIRIFQIMLNIQYRYSHCPRNGCGASLGVEMLQNPKPRPLICAIIQ*LRSLSYRVPGALLLNGQHWMKRQGDLLQNSLVKSSNPKQRNHDKITYQSTTAMAI*

Protein Length: 1024

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGGGTTGTTTCTAAGGCAGACGATGATGAGGTAGTTGAAACAAGTCATGTTGAAGATGCTTTTGTAGAAGCTTTAAAATCAAAAGCTAATTCTCCACCACAAGAGATCTTGCTGAGGATAAAAAATGAGTTGACATTAAAAGAACGAGCTGACCAAAGCACCTTTTTTGTCTACAAGCTGGGATTGTCTAGAATGCAACCTTGTCTCTTGATGAATGGTCTTGTTTATGGATCCAGCCAGGCACAAGATGCAGCCTTACAGGCTATGAATGAAGATCTTATGAAACTTCAGGAGGGGGTGTATTATGGACATATTAATTCCCGTACAGATGTTCTGGAAAAATTCCTTTCAGAGAGTGGTCATCCTAGATACAATCCGCATATTATTCGAGAGGGAAAGGATCATCAAAAGTTTGTGTCCCTTGCTACATCAGTTTTGAAGAGGGATTCAGTGGTGGTGAAACTTCAATATTTACATTCTCCAGAAACTGAAGATGACATGAAGCCAGTTACCCATCTTCTCGCTGTTGATCTTACCTCAAAGAGAGGGTTGAAATTTCTTCGTCATGGACTTCGCTATCTGTTGGATGGAACCAAAAGGGCACGTATTGGAATATTATATAACATTGATAATCCAGTTTCATTTTCTCAAGGATCTCCTGTCTTGCTTCTTGTCAAAGTTATTGATTCTACTGCATCATCTTTCAGGTACCATGCCAAGGCTTTAGAATTTCTAAACCAGTTAATGATTTGGTATGAAGCACAACATTTATATAGTTCACAAACAAGTAATACCAATGTCGAAGCTTTTATTGAAGAAGTTGCTAAGCTGGCTGAAGCAAATGATTTGAAGTCAGATCGCTTGAGGTCTGCACTGTCAGAAATCTCATGGGACTCTTTCAAGGATTATTTGCAAAGGGTTTCTGGCTTTTTATCGTCAGAGTTTGGACTTAGGTCAGGCGATAATGCTGTCATTACAAATGGAAGGGTGGTCCTTCACAAAGAAGACAGTTTTGTCACTGATGATTTGAAGCTTCTGGAAACTGTAGAATATGATAGAAGAATCAAACCTGTAGCAACTATAATTGAGCAAGTTGAGTGGGAAGGAGTTGATCCTGATGACCTAACAAGTGATTTTCTTAGTGATGCAATAATGGCAATTTCATCTGCAATGGCTATTCGTTCCCGAGGTGCTGATAATGCTCATTTTGAAGTTCTAAATGCAAAATACAGTGCTGTTATCCTGGAGGAGGAGAATGCCATTATACACGTTGAxxxTGCTGTGATTGATCCTTTGAGCTCCTCTGGTCAAAAGATTGCTCCACTTCTTCGCCTACTACAGAGATGGTTTCAACCTAGTATGCGGATTGTTATGAACCCTGTGAGCTCTCTTGCTGACCTTCCACTGAAGAACTTCTACAGATATGTTATTCCATCAAAGGATAATTTATATTCTGATGGTTCATCAATGAATGGTCCTACTGCTTGGTTTTCAAACATGCCCTTAGCTAAAACTTTAACGATGAATTTGGATGTTCCTGAGCCATGGCTTGTTGAACCTGTCATTGCAATTCATGATTTAGACAATATTGTTCTTGAGAATCTCGGAGATGCAAGGACATTAGTGGCTGTTTTTGAGCTGGAGGCACTTGTTTTAACTGGGCATTGCTCAGAAAAAAACCATGAACCACCTCGGGGTCTTCAATTGCTTCTGGGGACGAAATTGAGGCCGCACATGGTTGATACTGTTGTGATGGCTAATTTGGGCTATTGGCAGCTTAAAGCTTCTCCTGGTGTGTGGACTCTACAACTTGCTCCAGGAAGATCTGCTGACCTTTACACGTTAGAAGGGACACGTGAAGGAACCGAGGAGGGCCCTAAGACGAAAAGGATAGTAATTGACAATTTAGGAGTACATTTAATTCACCTCAACGTAGTGAAGAAGAAAGGAAAAGAGAAGGAACAAATACTTATTAATGCAGATGAGATTGATGATGATGGTCCCTCACAGGAAGGAAAGGGGGTAAGCAGAAGGGATGGAATAAAGGATTTCTAAAATGGGCATCTGGTTTGATTGGTGGTGAAGACAAGCAGATAGATACAAATAGGCATTCACCTGTTCAAGGGCTGATGGGAAGGCATGGGGAAACAATCAATATTTTCTCAATTGCTTCCGGGCATTTGTATGAACGCTTTCTTAAAATTATGATATTAAGTGTGCTTAAGAACACCAATCGACCAGTAAAGTTTTGGTTCATCAAGAATTATCTATCTCCACAATTCAAGGACGTTTTACCTCATATGGCAAGGGAATATGGATTTGAATATGAGCTTATTACATACAAATGGCCATCATGGTTGCATAAGCAGACAGAAAAACAGCGAATCATATGGGCTTACAAAATTTTGTTTCTAGATGTCATTTTCCCACTTTCATTGAAAAAGGTTATATTCGTAGATGCGGATCAAATTGTTAGGGCTGATATGGGGGAGTTATATGATATGGATGTCAAGGGGAAGCCTCTTGCATATACACCATTTTGTGATAACAATAAGGAAATGGATGGCTATAAATTCTGGAAACAGGGTTTCTGGAAAGACCATCTACGTGGCAAGCACTACCATATTAGTGCCTTGTATGTTGTGGATTTGGACAAATTTCGTCAAACTGCTGCTGGAGATACATTGCGGGTATTTTATGAGACATTAAGTAAAGATCCAAACAGTCTCTCAAACCTTGATCAGGATCTTCCAAATTATGCTCAACATACAGTACCGATATTCTCACTGCCCCAGGAATGGTTGTGGTGCGAGTCTTGGTGTGGAAATGCTACAAAATCCAAAGCCAAGACCATTGATTTGTGCAATAATCCAATGACTAAGGAGCCTAAGCTACAGGGTGCCAGGCGCATTGTTGCTGAATGGCCAGCACTGGATGAAGAGGCAAGGAGATTTACTGCAAAATTCCTTGGTGAAGAGCTCCAACCCCAAACAGAGGAACCACGACAAGATAACCTACCAGAGCACGACAGCGATGGCGATTTAA___AATCTGATGCTAACCTGGGAGATGACAACAGGGATGACTATTTAGAATCTCATGCTGATCTACCAGACGACAATAGGGATGATGATTTAGAATCTCATGCTGAGCTGTAAAAATATGTTCTTCCAATGAATTTTGGTTCAATTTTTTCTGTAATGAGTCGTTTTAAGAGCAAACATTTTATTTATAACATGTGAAAATGGTAGAGGGTACACTGAAAGGACAGTTTGATTTACATCACAATTCTTCATTTACTTGTTTATTCATTTATTCTATTTAAAGGTAATTCTGGTTGTTGCGGTGGCTCCAGTTTCTCCACCCATGTCTTTCATAAGACGTAAAATGATGGATCGCAATTTATTATGATGCACTCTCAATAAGTCTACTCCTGCAATTTAAATTCTAGCTGTCGGTGTCACGTGTGCACCTCACTGGGCAAAGTTACGGTAGGTTTGTTACCTATAAGTAGGGGATTATA

Fln Alignment:

Contig2121___ADDDEV-VETSHVEDAFVEALKSKANSPPQEILLRIKNELTLKERADQSTFFVYKLGLSRMQPCLLMNGLVYGSSQAQDAALQAMNEDLMKLQEGVYYGHINSRTDVLEKFLSESGHPRYNPHIIREGKDHQKFVSLATSVLKRDSVVVKLQYLHSPETEDDMKPVTHLLAVDLTSKRGLKFLRHGLRYLLDGTKRARIGILYNIDNPVSFSQGSP-VLLLVKVIDSTASSFRYHAKALEFLNQLMIWYEAQHLYSSQTSNTNVEAFIEEVAKLAEANDLKSDRLRSALSEISWDSFKDYLQRVSGFLSSEFGLRSGDNAVITNGRVVLH-KEDSFVTDDLKLLETVEYDRRIKPVATIIEQVEWEGVDPDDLTSDFLSDXXXXXXXXXXXXXRGADNAHFEVLNAKYSAVILEEENAIIHVDxAVIDPLSSSGQKIAPLLRLLQRWFQPSMRIVMNPVSSLADLPLKNFYRYVIPSKDNLYSDGSSMNGPTAWFSNMPLAKTLTMNLDVPEPWLVEPVIAIHDLDNIVLENLGDARTXXXXXXXXXXXLTGHCSEKNHEPPRGLQLLLGTKLRPHMVDTVVMANLGYWQLKASPGVWTLQLAPGRSADLYXXXXXXXXXXXGPKTKRIVIDNLGVHLIHLNVVKKKGKEKEQILINADEIDDDGPSQEG
Q0WL80______________ADSSEADIEQEHVDGAFVETILPKVKTLPQDILLKLRQEHTLKEASEASSMFVFKLGLAKLKCSFLMNGLVFDSVE-EETLLNAMNEELPKIQEQVYYGQIESHTKVLDKLLSESGLSRYNPQIISGGKNKPRFVSLASSTRKGESMLNDVNYLHSPETSEDVKYVTHLLAADVATKKGMKLLHEGVRYLIGGSKSARLGVLFS-----SSQNADPHSLLFIKFFEKTASSFSHKEKVLYFLDKLCLFYEREYLLKTSVESASSQMFIDKVLELADEYGLSSKAYRSCLVESVDEELLKRLTKVAQFLSWELGLESDANAIISNGRVIFPVDERTFLGQDLHLLESMEFNQRVKPVQEIIEGIEWQDVDPDLLTSKYFSDVFMFVSSAMATRDRSSESARFEVLNSEYSAVLLGNENATIHIDxAVIDPLSPTGQKLASLLQVLQKHVQTSMRIVLNPMSSLVDIPLKNYYRYVLPNTDDYSSTGFDVDGPKAFFANMPLSKTLTMNLDVPEPWLVEPVIAIHDLDNILLENLGDTTTLQAVFEVESLVLTGHCAEKDHEAPRGLQLILGTKNRPHLVDTLVMANLGYWQMKVSPGVWYLQLAPGRSSELYALKGGNDGSQDQSSLKRITIDDLRGKVVHLEVVKRKGKEHEKLLVPSDGDDAVQQNKEG

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
1233	15		84		0.999986
1352	11	88			0.923564
1353	88	11			0.923564
2067	16		66	16	0.988813
2068	66			33	1.0
2069	80		20		0.995493
2162	75		25		0.996473
2216	85	14			0.993533
2217		14	85		0.993533
2219			87	12	0.992554
2270	14	85			0.993533
2273		83		16	0.994512
2398		11		88	0.923564
2500		33	66		1.0
2700		11		88	0.923564
2703		12		87	0.992554
2704		12		87	0.992554
2707	87			12	0.992554
2872	10		90		0.90298
3111		50		50	1.0
3246		33		66	1.0
3306		71	28		1.0
3308			28	71	1.0
3309		71		28	1.0
3310	71		28		1.0
3312		28	71		1.0
3315	71	28			1.0
3322		28		71	1.0
3323	28		71		1.0
3327		28		71	1.0
3328			28	71	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain