SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2090

Length: 1826 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene2090 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative growth-regulating factor 6 [Zea mays] gb\|ABQ01219.1\| putative growth-regulating factor 6 [Zea mays]	-	-	1.4013e-45	39%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	46%
Blast2go	growth-regulating factor 6	-	-	0.0	59%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on acid anhydrides, In phosphorous-containing anhydrides.	EC:3.6.1.-	-	0.0	59%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	59%
Blast2go	Lipopolysaccharide biosynthesis	00540	59%
Blast2go	Folate biosynthesis	00790	59%
Blast2go	Metabolic pathways	01100	59%

Source	GOs	Term	Type	Identity
Blast2go	ATP binding	GO:0005524	Molecular Function	59%
Blast2go	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	GO:0016818	Molecular Function	59%
Blast2go	nucleus	GO:0005634	Cellular Component	59%

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	Extradiol ring-cleavage dioxygenase, class I /II	IPR000486	-	-
Sma3	Resolvase, holliday junction-type, YqgF-like	IPR005227	-	-
Sma3	Universal stress protein A	IPR006015	-	-
Sma3	UspA	IPR006016	-	-
Sma3	YqgF/RNase H-like domain	IPR006641	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	WRC	IPR014977	-	-
Sma3	Glutamine-Leucine-Glutamine, QLQ	IPR014978	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: F6HEC9

Fln msg: your sequence is longer than subject: 369 - 318

Fln protein: MHLMRMGGETMNYHSGIQMHGARPPFTPAQWQELEHQALIFKYMMAGIPVPPDLLIPIRKSLEAINAGLFHHSHHIHPNIPWSSPFQLGFAKNCDPEPGRCRRTDGKKWRCSKDAFPDSKYCERHMHRGRNRSRKPVETPASHSSSLSLSTASARNNSIPSITNNTQSHVPFATPYSTSRLAGAGIVPPPSSANSNSSSNNQFNTDVGSYSIPSKDYRYMKGDIDEHVFFSTEVSGTSRGLGIDSQSMLSSSVDSGWRSLMPSKVSPFSSQSSFPTDAATKQQHSFLTSSFGGVQDQPVNVKIEQQPLRHFFDEWPRSRDSSTLSWTELDEDRSNRSSSTTQLSISIPITSSDFSGSSNSRSPTRGCK*

Protein Length: 370

Fln nts: AATGTAGAAACTGCTGCCCATTTAAAGAATACCCCCTCTTCTGCACTTCTGATAAAAGACAGGCGACATGTTTCAGTAAAGCTGAACCCAATCACACGTTCTCTCAACGGCAGAAAATCCATTTCTGAGTCCTGGAGGTTGTTGTGCATTCTCAAGCTCAGCGGCAGCAGCAGCTTACAAGTTGTTTTAGTCAATTACCATCGAATTAGTATGATTTGCCCGAAAGTAGTGGGGGTTTGTCTTGTGTCTTTTAGGGTTTCATAACTAAGAGGCAAAATTTAGTAATGCAATCGGGTGGTTTGAAAGGGTTTAGCATGATGTTATGGTAGAAGAGGGCCAGGAATGGTAATGAAATACCAGCTTCTACTAGGGTTTCCTGCATGGATCATTCTTGAATCCTTTCTACACATGTTGCCAACAGCGGCTGGAAGTAGAACAAGTCTCAAGTATATGCAGTGGGTTTTTTCAAGCAAAACAGGTTTGATTTGTAACAGCTAGAGATTA_-_ATGCATTTGATGCGTATGGGAGGAGAAACTATGAACTATCACTCTGGGATTCAAATGCACGGAGCTAGGCCTCCTTTCACTCCAGCACAATGGCAGGAACTGGAACACCAGGCATTGATCTTCAAGTATATGATGGCTGGAATCCCTGTGCCTCCTGATCTCCTTATTCCTATCAGGAAGAGCTTGGAGGCTATCAATGCCGGACTGTTTCATCATTCACATCATATTCATCCCAATATACCTTGGAGCTCTCCATTTCAGTTGGGCTTTGCCAAAAACTGTGACCCAGAACCTGGTAGATGCAGAAGAACAGATGGGAAAAAATGGCGTTGCTCAAAGGATGCATTTCCTGATTCAAAATACTGTGAACGCCACATGCACAGAGGCAGAAATCGTTCAAGAAAGCCTGTGGAAACACCCGCCTCTCACTCCTCATCCCTTAGTCTCTCAACAGCTAGTGCTCGCAATAATAGCATTCCATCGATCACAAACAATACACAGTCACATGTACCCTTCGCCACCCCCTATTCCACCTCTCGGCTTGCAGGAGCAGGAATAGTACCACCACCTTCTTCTGCCAACAGCAACAGCAGCAGCAACAACCAATTCAATACTGATGTAGGATCGTATTCAATCCCCAGCAAAGATTACAGGTATATGAAAGGAGACATCGATGAGCATGTGTTCTTCTCCACTGAAGTTTCTGGGACGTCTAGAGGTTTGGGTATCGATTCCCAGTCAATGCTCAGTTCATCTGTGGATAGTGGATGGCGTTCCTTGATGCCTTCAAAAGTGAGCCCATTCAGTTCCCAGTCCAGCTTCCCTACTGATGCTGCTACAAAGCAGCAACATTCCTTTTTAACCAGCAGTTTTGGAGGTGTGCAGGATCAGCCCGTGAATGTTAAAATTGAACAGCAGCCTCTGAGGCATTTTTTTGATGAGTGGCCAAGATCAAGGGATTCATCTACTCTTTCATGGACTGAATTGGATGAGGACAGATCCAATAGGAGCTCCTCCACTACCCAGCTTTCCATTTCTATTCCAATCACCTCTTCAGATTTCTCAGGATCCTCCAATTCCCGTTCTCCTACTCGTGGCTGCAAGTAA___GTATTAGTTCCTTTTATGTGATACAATCCATTATGCCCAAACATCATGTTAAACCCTAACAGTACTTTCTATCTATATTAAAAAAACCCCAAGTATTCACAAATCACTTCTCACAAGTGGAGATCTGAACCTCAGTTTTCTAAACTATTTGGTTCTGTGTGACCTGCAGTTTCTACAATATAGTTTCCATTGATTGTATTAGATAGATTTTAGAT

Fln Alignment:

Contig2090___PFTPAQWQELEHQALIFKYMMAGIPVPPDLLIPIRKSLEAINAGLFHHSHHIHPNIPWSSPFQLGFAKNCDPEPGRCRRTDGKKWRCSKDAFPDSKYCERHMHRGRNRSRKPVETPXXXXXXXXXXXXXARNNSIPSITNNTQSHVPFATPYSTSRLAGAGIVXXXXXXXXXXXXXNQFNTDVGSYSIPSKDYRYMKG---DIDEHVFFSTEVSGTSRGLGIDXXXXXXXXXXSGWRSLMXXXXXXXXXXXXXPTDAATKQQHSFLTSSFGGVQDQPVNVKIEQQPLRHFFDEWPRSRDSSTLSWTELDEDRSNRSS-STTQLSISIPI
F6HEC9______________PFTVSQWQELEHQALIFKYLMAGLPVPPDLVLPIQKSFESMSSRFFHH-----PTMGYCS----FYGKKVDPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVESQTTTQSSSTVTSLTVTGGS--GSGAGTFQNLPLQNFNNPQGGPGSG------------TNQSQFHMEPIPYGIPNKDYRYLHGLKPEVGEHSFFS-EASGSNRGLQMDSPLDSTWPLMPSRVSSFPPSKSSENSIL-----QSDYPQHSFFSSEFASGE----VVKQEGQSLRPFFDEWPKTRD----SWSGLEEERSNQTSFSTTQLSISIPM

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
565	80		20		0.995493
601	83	16			0.994512
604	16	83			0.994512
618		12		87	0.992554
619	12	87			0.992554
620	12	87			0.992554
621		87	12		0.992554
842	33		66		1.0
892	83			16	0.994512
894			83	16	0.994512
903		50	50		1.0
906		50	50		1.0
908	50		50		1.0
909	50		50		1.0
914		42		57	1.0
915	42			57	1.0
917		57	42		1.0
920	57		42		1.0
971	33			66	0.997452
972		33	66		0.997452
974	66			33	0.997452
1203		14		85	0.993533
1204		14		85	0.993533
1205	14		85		0.993533
1207	85			14	0.993533
1299		16	83		0.994512
1300	16			83	0.994512
1402		10		90	0.90298
1404	10	90			0.90298
1407			90	10	0.90298
1409	14	85			0.999981
1563		90	10		0.90298
1568	12			87	0.992554
1569		12		87	0.992554
1572			87	12	0.992554
1621		14		85	0.993533
1713	11		88		0.923564
1715			12	87	0.992554
1717			12	87	0.992554
1718	12			75	0.975346
1720	12			87	0.992554
1724	12		87		0.992554
1725	12			87	0.992554
1726			12	87	0.992554
1728	87			12	0.992554
1729		12	87		0.992554
1731		12	87		0.992554
1732	87		12		0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain