SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2067

Length: 1369 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2067

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative cytochrome P450 n=3 Tax=Lolium rigidum RepID=Q9ATU1_LOLRI	-	-	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	cytochrome p450	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	heme binding	GO:0020037	Molecular Function	70%
Blast2go	monooxygenase activity	GO:0004497	Molecular Function	70%
Blast2go	electron carrier activity	GO:0009055	Molecular Function	70%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group II	IPR002402	-	-
Sma3	Trehalose-phosphatase	IPR003337	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABC4

Fln msg: your sequence is longer than subject: 311 - 181

Fln protein: MLTIPPWVLHLNHSYHLVKTSMRDYERSHVQPISKFLPTKKNRYMRKLDREIRGSLRQLIQSKKQTWSLGKSGSYGGDLISVMTSSSRDQQQQGVVLQKGMMSIEEIVEECKTFFFAGHDTTFCLLAWAMILLAMHPQWQDRARKEILSICRRQAPKPENLNQFKIMTMILNESLRLYPPVVALIRQAEQDMKLGNFSVPAGTQLLFPIIALHHDPSLWGDNAKEFDPERFCDGVSKAAKHPMAFMPFGMGPRICVGQNFALLQSKLILAMILQRFSFSLSPTYTHAPIPVVFLQPQFGAQMVMTPLSQE*

Protein Length: 312

Fln nts: ATGGGGAGCGTTTACTGTAGCTAAGGGTAGTATATACACTGTTAAATCCCTAATGCAAATATGCAACTTATGTAAAAATCTAACTATGCATAGATTGTCCCTAGCTGCAGTAAATCTTATGTAGGTGGATGCATA_-_ATGCTTACCATCCCACCATGGGTTCTCCACCTCAATCATTCTTATCATTTGGTGAAGACTTCCATGAGAGATTATGAAAGATCTCATGTACAACCAATATCAAAGTTTCTGCCTACCAAAAAGAATCGATACATGAGAAAACTAGACAGAGAAATCCGGGGGTCCCTGAGGCAGCTGATTCAAAGCAAGAAGCAAACTTGGAGCTTGGGCAAATCCGGCAGTTATGGTGGTGACCTCATCAGTGTGATGACATCCAGCAGCAGAGATCAGCAGCAGCAAGGAGTGGTGCTGCAGAAGGGCATGATGAGCATTGAAGAAATTGTGGAGGAATGCAAGACATTCTTCTTTGCAGGCCATGATACAACATTCTGCCTCTTGGCATGGGCCATGATACTACTTGCAATGCACCCCCAATGGCAGGACCGAGCACGCAAAGAAATTCTCAGCATATGTAGACGCCAAGCTCCCAAACCAGAAAACCTGAATCAATTCAAGATAATGACCATGATTCTGAACGAGTCCCTTAGGCTTTATCCACCAGTAGTGGCGTTGATCAGGCAGGCAGAGCAAGACATGAAGCTTGGAAACTTCTCAGTCCCTGCGGGCACCCAACTCCTGTTTCCAATCATTGCCCTCCATCATGACCCGTCTCTGTGGGGAGATAATGCCAAAGAATTTGACCCTGAAAGGTTCTGCGATGGAGTATCCAAGGCTGCCAAGCATCCCATGGCCTTCATGCCATTTGGGATGGGACCCAGGATTTGTGTTGGACAGAATTTCGCACTGCTCCAGTCCAAGTTGATACTTGCCATGATATTGCAGCGTTTCTCCTTCTCCCTCTCTCCTACGTATACACATGCGCCCATCCCTGTTGTGTTTCTTCAGCCCCAGTTCGGAGCGCAAATGGTTATGACTCCACTTTCACAGGAATGA___TCAGAAACAACAAAACTCAAGCCATTGTATGGCTCCATGACGATTCTGATGAGAGCTTGGGGTAGCATGTTGCAAAATGTAAAGTTTGAAGTTGTTGAATAGGAGCTTGGCTTCGCCTGATGTAAAGTGAAATGTCTGATGTTGTTGAAGGGGAGCTTGGCGTTGGTTGTTGTAAAATTAAGGTTTGATGTTGCTTTAAGTAAAAGAGATGTCTTGTCCTTTGGTTTGGAATTAATGTAAAAAGCTACTATGCTTCAGTGTTTTCTTAATGTAAGGCCAACATTTTTTTCCTGCGGTTCGC

Fln Alignment:

Contig2067___MILLAMHPQWQDRARKEILSICRRQAPKPENLNQFKIMTMILNESLRLYPPVVALIRQAEQDMKLGNFSVPAGTQLLFPIIALHHDPSLWGDNAKEFDPERFCDGVSKAAKHPMAFMPFGMGPRICVGQNFALLQSKLILAMILQRFSFSLSPTYTHAPIPVVFLQPQFGAQMVMTPLSQE
D5ABC4______________MILLGMHPQWQDRARKEIISICRHQPPKPENVSQLKIMGMVLNESLRLYPPVVALIRQAGQDMKLGNLSVPGGTQLLFPIIALHHDPSLWGDNAKEFDPERFCDGVSKAAKHPMAFMPFGMGPRICVGQNFAVLQAKLILAMILQRFSFSLSPTYTHAPIPVVFLQPQFGAQMVMTPLSQE

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
532		83		16	0.994512
634	88		11		0.923564
691	85		14		0.993533
810	90		10		0.90298
891	85			14	0.999981
892		85	14		0.999981
893		85		14	0.999981
896		14	85		0.999981
897			85	14	0.999981

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain