SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2056

Length: 919 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2056

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	aprataxin [Arabidopsis thaliana] sp\|Q9M041.1\|BH140_ARATH RecName: Full=Transcription factor bHLH140; AltName: Full=Basic helix-loop-helix protein 140; Short=AtbHLH140; Short=bHLH 140; AltName: Full=Transcription factor EN 122; AltName: Full=bHLH transcrip	-	-	5.0e-32	57%
FL-Next	sp=Transcription factor bHLH140; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%
Blast2go	transcription factor bhlh140-like	-	-	2.10195e-43	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenylylsulfatase.	EC:3.6.2.1	-	2.10195e-43	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Sulfur metabolism	00920		2.10195e-43	78%
Blast2go	Metabolic pathways	01100		2.10195e-43	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	2.10195e-43	78%
Blast2go	sulfur compound metabolic process	GO:0006790	Biological Process	2.10195e-43	78%
Blast2go	purine ribonucleotide metabolic process	GO:0009150	Biological Process	2.10195e-43	78%
Blast2go	adenylylsulfatase activity	GO:0047627	Molecular Function	2.10195e-43	78%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	2.10195e-43	78%
Blast2go	nucleus	GO:0005634	Cellular Component	2.10195e-43	78%

Source	InterPros	Term	Type	Identity
Sma3	Adenylate kinase	IPR000850	-	-
Sma3		IPR001092	-	-
Sma3	Histidine triad (HIT) protein	IPR001310	-	-
Sma3	Appr-1-p processing	IPR002589	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Histidine triad motif	IPR011151	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
377	84			15	0.999986
378		15		84	0.999986
381		84	15		0.999986
383		15		84	0.999986
386		84		15	0.999986
387		84	15		0.999986
394			83	16	0.999991
395		16	83		0.999991
397	83	16			0.999991
399	16		83		0.999991
656	25		75		1.0
661		28		71	1.0
665		28		71	1.0
682	12	87			0.992554
685		87	12		0.992554
686	87		12		0.992554
713		12		87	0.992554
764		28		71	1.0
771	33			66	1.0
787	33	66			1.0
788		33		66	1.0
833	66			33	0.997452
847	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain