SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2051

Length: 1655 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene2051 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aspartyl protease family protein [Arabidopsis thaliana] emb\|CAB82992.1\| putative protein [Arabidopsis thaliana] gb\|AAT85726.1\| At5g02190 [Arabidopsis thaliana] gb\|AAU94418.1\| At5g02190 [Arabidopsis thaliana] dbj\|BAE99007.1\| hypothetical protein [Arabidops	-	-	46%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	52%
Blast2go	aspartic proteinase nepenthesin-2-like	-	-	62%

Source	ECs	Term	Type	e value	Identity
Blast2go	Arsenite-transporting ATPase.	EC:3.6.3.16	-	0.0	62%
Blast2go	Glutathione gamma-glutamylcysteinyltransferase.	EC:2.3.2.15	-	0.0	62%

Source	GOs	Term	Type	Identity
Blast2go	arsenite transport	GO:0015700	Biological Process	62%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	62%
Blast2go	programmed cell death	GO:0012501	Biological Process	62%
Blast2go	indole glucosinolate catabolic process	GO:0042344	Biological Process	62%
Blast2go	phytochelatin biosynthetic process	GO:0046938	Biological Process	62%
Blast2go	defense response by callose deposition in cell wall	GO:0052544	Biological Process	62%
Blast2go	response to arsenic-containing substance	GO:0046685	Biological Process	62%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	62%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	62%
Blast2go	cadmium ion binding	GO:0046870	Molecular Function	62%
Blast2go	arsenite-transmembrane transporting ATPase activity	GO:0015446	Molecular Function	62%
Blast2go	peptidase activity	GO:0008233	Molecular Function	62%
Blast2go	copper ion binding	GO:0005507	Molecular Function	62%
Blast2go	glutathione gamma-glutamylcysteinyltransferase activity	GO:0016756	Molecular Function	62%
Blast2go	cytosol	GO:0005829	Cellular Component	62%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	62%
Blast2go	phytochelatin transmembrane transporter activity	GO:0071992	Biological Process	62%
Blast2go	phytochelatin transmembrane transport	GO:0071994	Biological Process	62%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9HBT4

Fln msg: your sequence is longer than subject: 487 - 404

Fln protein: MAAISVFGPFLFLPSLLILLFLSSINGLSHLAPETTDPLNVSHFFNLHPNATSSHGEGHGFPLFSPTTSTAVTWPSFLINALSKTVKNQANANLSVSKAAATARVTFRYSGPALMVEAMVGTPPQKQRMVLDTGSELSWLHCSKAPAFDHTLSSSYKAVPCKSPVCTKKTSDFALPASCDAKRLCHFTCAYADSTDVEGNLASDVVSLLPSNTRATALRIPGLVLGCASSALAGTPALMGLNRGALSFVSQLRTLNIPPKFSYCIADRFHSPDSPGLLYFGNSPFAKYLHYTQLFTIALPLPYFNRAAYSVRLESIKVGNKLLPIPKSVFLPDHTGAGQTMIDSGTQFTFLVGEAYNQLKREFARQNRGLLMKPMGENFVFQGAMDLCYQRPVRAPFSQLLSTVTLTFDSAEITLEGHQLLYQVPRRYAGNGVAKGRAIYCFTFGNSDLVPVEANIIGNHHQQNLWVEYDLQNSRIGFARARCRVN*

Protein Length: 488

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCATTGTGTTTCTGATCACTCGAGAGCCCTGCTTTGATCATTCTACACCC_-_ATGGCTGCGATCTCAGTTTTCGGTCCTTTCCTCTTCCTGCCTTCTCTGCTCATATTGCTGTTCCTTTCTAGTATTAATGGATTAAGCCATCTGGCCCCTGAAACCACCGATCCATTGAATGTGAGTCACTTCTTCAATCTCCATCCAAATGCAACGTCCAGCCATGGCGAGGGCCATGGATTTCCACTTTTCTCCCCAACTACGTCCACTGCTGTTACTTGGCCTTCATTTCTCATAAATGCTCTCAGTAAAACAGTGAAGAACCAGGCCAACGCGAATCTTTCAGTGTCCAAGGCTGCAGCCACGGCTAGAGTGACCTTTCGCTACAGCGGCCCTGCTCTCATGGTGGAAGCCATGGTGGGAACTCCTCCCCAGAAGCAACGCATGGTGTTGGACACAGGCAGCGAGCTCTCCTGGCTCCATTGTTCGAAAGCCCCTGCATTCGATCATACTCTCTCTTCTTCCTACAAGGCAGTACCCTGCAAATCCCCCGTCTGCACTAAAAAAACCTCGGACTTCGCCCTTCCAGCCAGCTGCGACGCCAAACGTCTCTGTCATTTCACGTGCGCATACGCTGATAGCACGGACGTGGAGGGAAACCTCGCCAGCGATGTGGTTAGCCTTCTGCCTTCGAACACAAGGGCAACTGCTCTCCGAATTCCCGGCTTGGTGCTCGGTTGCGCCTCCTCGGCCCTGGCCGGCACGCCGGCTTTGATGGGTCTCAACCGTGGTGCTTTATCCTTCGTTTCTCAACTGCGAACCCTCAATATTCCGCCCAAATTCTCATACTGTATTGCCGATCGTTTCCATTCTCCGGATTCTCCCGGACTCCTTTACTTCGGAAATTCTCCTTTTGCCAAATATTTGCACTACACGCAGCTGTTCACAATAGCACTTCCGCTACCGTATTTCAACAGAGCGGCCTACAGCGTTAGGTTAGAGAGCATCAAGGTTGGAAACAAGCTTCTCCCCATCCCCAAGTCCGTGTTCCTGCCAGACCACACGGGCGCAGGTCAGACCATGATCGACTCCGGAACTCAGTTCACATTTCTTGTGGGGGAGGCGTATAATCAGCTGAAGCGGGAGTTTGCGCGGCAGAACCGCGGGCTCCTAATGAAGCCCATGGGCGAAAATTTTGTGTTCCAGGGAGCTATGGATCTCTGCTACCAGCGACCCGTCCGTGCGCCATTTTCGCAGCTGCTGAGCACCGTGACGCTGACGTTTGATTCTGCAGAGATCACGCTAGAAGGTCATCAGCTCCTCTATCAAGTACCCAGAAGATATGCTGGAAATGGTGTTGCAAAGGGCCGGGCAATCTACTGTTTCACATTCGGAAATTCAGATTTGGTGCCGGTTGAGGCCAATATTATCGGCAATCACCATCAGCAGAATCTGTGGGTAGAATATGATCTTCAGAACTCTCGCATTGGCTTTGCGAGAGCTCGCTGCAGGGTCAACTGA___CCGTAAGATTCACTGCATACCAGTATTGTTGTATGACGTCATTTTGAATATACCATACTACTGTTTTCTCCAGATGTTTGTATTAATATGAATAGTTATTGGGTATTACAATAAGTTT

Fln Alignment:

Contig2051___ALMVEAMVGTPPQKQRMVLDTGSELSWLHCSKA----PAFDHTLSSSYKAVPCKSPVCTKKTSDFALPASCDAKRLCHFTCAYADSTDVEGNLASDVVSLLPSNTRATALRIPGLVLGCASSALAG-------TPALMGLNRGALSFVSQLRTLNIPPKFSYCIADRFHSPDSPGLLYFGNS--PFAKYLHYTQLFTIALPLPYFNRAAYSVRLESIKVGNKLLPIPKSVFLPDHTGAGQTMIDSGTQFTFLVGEAYNQLKREFARQNRGLLMKPMGENFVFQGAMDLCYQRPVRAPFSQLLSTVTLTFDSAEITLEGHQLLYQVPRRYAGNGVAKGRAIYCFTFGNSDLVPVEANIIGNHHQQNLWVEYDLQNSRIGFARARC
B9HBT4______________SLIVSLTVGTPPQNVSMVIDTGSELSWLHCNKTLSYPTTFDPTRSTSYQTIPCSSPTCTNRTQDFPIPASCDSNNLCHATLSYADASSSDGNLASDVFHIGSSD-------ISGLVFGCMDSVFSSNSDEDSKSTGLMGMNRGSLSFVSQLGF----PKFSYCIS----GTDFSGLLLLGESNLTWSVPLNYTPLIQISTPLPYFDRVAYTVQLEGIKVLDKLLPIPKSTFEPDHTGAGQTMVDSGTQFTFLLGPVYNALRSAFLNQTSSVLRVLEDPDFVFQGAMDLCYLVPLSQRVLPLLPTVTLVFRGAEMTVSGDRVLYRVPGELRGND-----SVHCLSFGNSDLLGVEAYVIGHHHQQNVWMEFDLEKSRIGLAQVRC

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
844	85		14		0.993533
847	14		85		0.993533
1048		88		11	0.923564
1054	11		88		0.923564
1102			85	14	0.993533
1107	14			85	0.993533
1111	14			85	0.993533
1112			14	85	0.993533
1116		14	85		0.993533
1119	85	14			0.993533
1164		85		14	0.993533
1165		85	14		0.993533
1170		14	85		0.993533
1174	14			85	0.993533
1175	14	85			0.993533
1177		85	14		0.993533
1179		14	85		0.993533
1180	14	85			0.993533
1182			14	85	0.993533
1183	14		85		0.993533
1184		14		85	0.993533
1318		10		90	0.90298
1348	90		10		0.90298
1386			90	10	0.90298
1389		10	90		0.90298
1391	90		10		0.90298
1392	90	10			0.90298
1393	90	10			0.90298
1405		13		86	0.999973
1515	33			66	1.0
1543	82		17		1.0
1572		85	14		0.999981
1573	14		85		0.999981
1581	15		84		0.999986
1586		15		84	0.999986
1588		15	84		0.999986
1589	84		15		0.999986
1591		15		84	0.999986
1606	22			77	0.999999
1607		77	22		0.999999
1608		22		77	0.999999
1610	22		77		0.999999
1622	66	33			1.0
1623	66		33		1.0
1637	66			33	0.997452
1638			66	33	0.997452
1639		33		66	0.997452
1640		25	50		0.995533
1641	33	33		33	0.997753
1644			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain