SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2031

Length: 1209 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2031

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative calcium-activated outward-rectifying potassium channel 6 [Arabidopsis thaliana] sp\|Q9SVV6.1\|KCO6_ARATH RecName: Full=Probable calcium-activated outward-rectifying potassium channel 6; Short=AtKCO6 emb\|CAB53657.1\| potassium channel-like protein [A	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	outward rectifying potassium channel	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	calcium ion binding	GO:0005509	Molecular Function	80%
Blast2go	outward rectifier potassium channel activity	GO:0015271	Molecular Function	80%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	80%
Blast2go	potassium ion transmembrane transport	GO:0071805	Biological Process	80%

Source	InterPros	Term	Type	Identity
Sma3	Two pore domain potassium channel	IPR003280	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Ion transport 2	IPR013099	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE84

Fln msg: your sequence is shorter than subject: 341 - 449

Fln protein: VAADDSNKYLKPIDQLWGSHLEGRRKNLHRSRTAPAMSAMGNVRDGLKRPELDSVSSIVKQAILGLLIYLSFGMGVYWFNRDHFAGKETNSIIDAFYFCIVTMCTIGYGDITPTSTIAKLFSCLFVLVGFGFIDILLSGMVTYVLDKQENFLLQAVDGSHHDIAKTYFVDVKKGRMRIRMKVAIALGVVVLCIGVGAGVMHSVERLGWIDSFYLSVMSVTTVGYGDRAFRTLTGRLFAAIWLLVSTLAVARAFLYLAEARIDKRHRLIAKWVLQRDMTVQDLMAADIDNNGFVSKSEFVIYKLKEMGKVEEKDIVAIVKQFNRLDTDNCGKITLSLLSGH*

Protein Length: 342

Fln nts: ATGTAGCTGCTGACGATAGCAATAAATATTTAAAACCAATTGATCAATTATGGGGTTCGCATTTAGAAGGGAGGAGGAAGAATTTGCACAGGTCGAGGACTGCCCCTGCCATGTCGGCAATGGGCAACGTGAGAGATGGCCTTAAGAGGCCGGAGTTAGACTCGGTTTCTTCTATTGTAAAGCAGGCTATTTTGGGGTTGTTGATATATCTTTCGTTCGGAATGGGCGTTTATTGGTTCAATAGGGATCATTTTGCAGGAAAAGAAACCAATTCCATAATCGATGCCTTTTATTTCTGCATTGTGACGATGTGCACGATCGGTTATGGAGATATTACTCCCACGAGTACAATAGCGAAGTTGTTTTCGTGCTTGTTTGTGCTTGTTGGCTTTGGGTTTATTGATATTTTGCTGAGTGGAATGGTAACATACGTTTTGGATAAGCAGGAGAATTTCCTGCTCCAAGCTGTCGATGGAAGCCACCATGATATAGCGAAGACGTATTTTGTTGATGTCAAGAAAGGTAGGATGCGCATCAGAATGAAGGTTGCAATTGCTCTTGGCGTGGTGGTGTTGTGTATTGGCGTTGGGGCGGGAGTGATGCACAGTGTGGAGAGATTGGGATGGATAGATTCTTTTTACCTGTCGGTGATGTCGGTGACGACGGTTGGCTATGGAGACCGTGCCTTCAGGACGCTGACTGGCCGGTTGTTTGCAGCGATCTGGCTTCTGGTAAGTACACTTGCTGTTGCGCGAGCATTTCTGTACTTGGCAGAAGCAAGGATTGATAAAAGACACCGTTTGATTGCGAAATGGGTGTTGCAAAGAGATATGACTGTTCAGGATTTGATGGCCGCCGATATTGACAACAATGGCTTTGTCAGTAAATCAGAGTTTGTGATATACAAGCTGAAAGAGATGGGAAAAGTGGAAGAGAAGGATATTGTTGCAATTGTCAAGCAGTTCAATCGACTAGATACTGATAATTGTGGCAAGATCACTTTATCGCTTCTAAGTGGTCATTAA___GCTCCTCTGTTATGTTTATTGTCATTCCCATATTTATATCATCATACAAAATTATAGAGGCATTTTTTCTGTTGACTGGAAAGCTTGGTGTCATCCTGCATATGATGATATATGACCAGGTTTGACCCCTGATTCTCACATTGAGGATGACTGTATTATATGCCCGATCAATGAAATCAGCTAT

Fln Alignment:

Contig2031___ADDSNKYLKPIDQLWGSHLEGRRKNLHRSRTAPAMSAMGNVRDGLKRPELDSVSSIVKQAILGLLIYLSFGMGVYWFNRDHFAGKETNSIIDAFYFCIVTMCTIGYGDITPTSTIAKLFSCLFVLVGFGFIDILLSGMVTYVLDKQENFLLQAVDGSHHDIAKTYFVDVKKGRMRIRMKVAIALGVVVLCIGVGAGVMHSVERLGWIDSFYLSVMSVTTVGYGDRAFRTLTGRLFAAIWLLVSTLAVARAFLYLAEARIDKRHRLIAKWVLQRDMTVQDLMAADIDNNGFVSKSEFVIYKLKEMGKVEEKDIVAIVKQFNRLDTDNCGKITLSLLSGH
D5AE84______________ADDSNK---SIDQLWGSHLEGRRKNLHRSRTAPAMAAMSNVREALKRPELDSVSSIVKQAVLGLLIYLSFGMGVYWFNRDHFAGNETNSVIDAFYFCIVTMCTIGYGDITPKSTIAKLFSCLFVLVGFGFIDILLSGMVTYVLDKQENFLLHAVDGSHHDIAKTYFVDVKKGRMRIRMKVAIALGVVVLCIGVGAGVMHSVESMGWIDSFYLSVMSVTTVGYGDRAFKTLTGRLFAAIWLLVSTLAVARAFLYLAEARIDKRHRLIAKWVLQRDMTVHDLMAADIDNNGFVSKSEFVIYKLKEMGKVEEKDIVAIVKQFNRLDTDNCGKITLSLLSGH

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
308	14		85		0.993533
382			11	88	0.923564
384		11	88		0.923564
385			11	88	0.923564
388	11		88		0.923564
390		11		88	0.923564
395		11	88		0.923564
397			11	88	0.923564
400		11		88	0.923564
402		11	88		0.923564
507	10		90		0.90298
687			16	83	0.994512
690	83		16		0.994512
691			83	16	0.994512
695		16	83		0.994512
696		83		16	0.994512
699	83		16		0.994512
703			83	16	0.994512
706			83	16	0.994512
707		16	83		0.994512
857		50		50	1.0
888	33			66	0.997452
891			66	33	0.997452
892	66			33	0.997452
974	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain