SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2029

Length: 2883 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene2029
ATGGGACAGACAGCAATTCGAATGTCTCGGTGTTGTCTGTGCATATCATGGTTTTTATGCTTCGATGTCTCGACCGCCATGACAACGGTTTTCTGATCTCTCGAAGTTTAAAATTGGGGTTTGCGGGCTGAAAATTGTGGATTTTCAGTTGCAAAAATTGGGTTTTTTGGCTGAGAACTGGACTTTTTAGGCTGGAAATTGATTTTCAAGGGTTAAAAGTTGGGCTTTTGGGCTAACGATATGGGGGTTTTAGTCGGGGTTTGCTAAAATTTGAAGAGTTCTCAGGCCAGAAAAATGAGTTATTTTATTTAAAAATTACGTGTTTTAAGGCTGAAGAACTCTGGGTGTGGGAAATTATTGAGGCCTGAATTCAAGGTTTGTGTATCTGTTAGGATTTTGAATTACTCGAAGAAGATTCAATTTTTATTGGCAGCATGCCGTGGAAGGCCTCCTTGGCTGATATCTTCAAGCGGACCATGTATTTTGTAGTGTACGGCGGAGTAATTCAATAACGAGGTCTTTTGGGGTTTTATTGTCTTTAGGAGTTCCCTTTATGCGGGTTTTTTAATTTTATAGGGTGCTTGTAGGTTTTATTTCAGAAGCTATCAGTTTGGTATAAATGTCGTGGCGAACAGCATCGAACCTAAGGGAATTCCTTGCATTAAGACATCAAAGTGGTCGTAGAAAGAGTAATGGGATCATGATAGCCAGAATCATTGCCTGCTTCGAGATTTTGCAATATTGCCAGGATTATTATTTTCAGGCTATTACGTAGAACTCCATTTCACATCTAGAGTTTTCAGGTCTCCAAAAATTGTGTAGTCAAGGCCACGGCAATTGTGACAATACACAGATTAGATGGCTTGGACTGAGTGGTTTAGGTATAGCAGGTGGAAACTATGATATGTGTAACCTGACCGTGGTCAGACTACATAATTAGAAGTGATAACGTACTGTTGCAGGCTCGTGGATTTGAGTTTTCAAGACCTATACACAGTTTGCTAAATGGAGAACCAGAACATGACAGGACCATATTTGGACATAGTTAGTCAGGTACCAGGGCATGCATGCTCAGAGACTAAATTTCCATTGCTGGTATTAGACTCTGGTTACCCGAATTTTATGAATTTGAAGCCCTTGTGGCAGACAGCCCAATATGAAGGAACTTTGTTAAAACGTTCTCAGTATTATCAGCTTAGTTCTAATGGGAATATTCAAAAGGGTAGCCTTGATGCAGCACTGACTAGTGGGATGGAAGCAAGCTATAATTATATCCACATGGCTAACTTATCTGACCCTTATGCTGAATGTATAACTCCTGTCAAGGGAGATGTATCATCCATGCCACGCGGAAATTATGCTGATGTTTGGGGTGGCAATTGTGCTGATAAATTATCACAAATTAGATTTCTTGATACTTCCCAATTACAAGCACCTGATTATTACAAAAATATGTTCATGTGTGACTATAATATGAACAGATGTGGGTTTACTTTTCACCCTGCACTAGTACAGAGCTTTTCGGAGATGTTGCCCGGCAACGGCAAGGTAAATAAAGAGACTAATCCTGAAAACACGGCCATGGAGAAAAACGCAATTTCTGAAGTACTGGCCGCAGGAACATCAGGCCTCTGGGATGTTAATTTGCCATGGTACAGGGAAACTATTCCCTCATCTCTTACAACTATGCCAAATATGGGAATGAGTCAATTGTGCATGACAGCCCTGGACAGCTATGGGGGTGAGTTTATTGATTGTCCTGTCGTTGAAAATGAAGGTGCAATTCATGTGAGCTGTGATGTATTAAGCAAAGGGAACTCTGGAGTTTCTCAGACTCAGCTACATGAAAACACTGCAGATTTAGATGCTCTGTTGAGTTCTGATGAAGAGGAGAGTAGCAATGGTCAGGAGAGTAGCACTGGTCACTCACCAGGTGAATATAGTGGAAATAAAAAGGCATATACAAAAGTTAGGGATGATACTATTGCTGGGATATCAGCCAAGGAAACAGGTAGCAATCAACAGGAACATAAAGAAGAGGAAGCAGACTTTGGACCTGCTATTATTGAAGAATCAGTTGGCGAGTCTAGCATAAATGACAACTGTTTTTTGTTTGATGACTCTCTTCTGGTCACTCTGACCCAGGAAGTGGACATCCAAACCAAGAATTGCAAAAATGCCAAGGAGAATGAATGTAACAACAAGAATATCCGTGCATTGAGTGCTGTTAGCATGCTGACTGAGGGAAGTACAAAGAATAGTGCACTTAGATGCAGACAGTCACATAAATCTCTTTCAGGGAAATCTGCTTCTGCCAAGAAATCCAAAAAAGAGAGAATAAAAGGAATGGTCCAACTTCTGAGAAATATAATCTCTGGTGATGATTACATGGACACTGCTGTTGTCCTTAATAAGACTATTAGATATGTTAAATCTCTCCAGGTAAAAGTGAACAGATTGGAGGCTAATCAGCAGGAAAACGTGAAGGTTTGACCCCAGTGTGACAAGGTGTCTCTTGCAGAATTCCCAAGATAATGGTGAGAAAGTGGGTCCTAAAAGGCGCGAAGATGGCTTCGCCAGCTCAAAATAAAGATAGAAATTCTGGCATACTTGTCTACATTCCAATGATAGCTGTAGCCAGGATTTTGATCTGATCCTAGTTTTCTGGAGCTAAAATATTGGTGTGCTGTGCTTTGGTTTCGTATATATATTGAACTTACAAATTGTAGGGTTTTTAGTCATAGAATTCCTGCTTTTTTATGTATTTTGTACCCGTCCCTACTGAAGCTCTGGTGGTATTGTATTGAGTCTGTATGGAATATATGATATTTGTCGACGCATGTCTTATTTGGTCTTCTTTTCCGATGGATTTATCAAATTTTC

Ace file of the UniGene sp_v2.0_unigene2029 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	unknown [Picea sitchensis]	-	-	1.51258e-29	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	1.51258e-29	64%
Blast2go	nucleus	GO:0005634	Cellular Component	1.51258e-29	64%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR001092	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NR87

Fln msg: your sequence is longer than subject: 496 - 87

Fln protein: MENQNMTGPYLDIVSQVPGHACSETKFPLLVLDSGYPNFMNLKPLWQTAQYEGTLLKRSQYYQLSSNGNIQKGSLDAALTSGMEASYNYIHMANLSDPYAECITPVKGDVSSMPRGNYADVWGGNCADKLSQIRFLDTSQLQAPDYYKNMFMCDYNMNRCGFTFHPALVQSFSEMLPGNGKVNKETNPENTAMEKNAISEVLAAGTSGLWDVNLPWYRETIPSSLTTMPNMGMSQLCMTALDSYGGEFIDCPVVENEGAIHVSCDVLSKGNSGVSQTQLHENTADLDALLSSDEEESSNGQESSTGHSPGEYSGNKKAYTKVRDDTIAGISAKETGSNQQEHKEEEADFGPAIIEESVGESSINDNCFLFDDSLLVTLTQEVDIQTKNCKNAKENECNNKNIRALSAVSMLTEGSTKNSALRCRQSHKSLSGKSASAKKSKKERIKGMVQLLRNIISGDDYMDTAVVLNKTIRYVKSLQVKVNRLEANQQENVKV*

Protein Length: 497

Fln nts: ATGGGACAGACAGCAATTCGAATGTCTCGGTGTTGTCTGTGCATATCATGGTTTTTATGCTTCGATGTCTCGACCGCCATGACAACGGTTTTCTGATCTCTCGAAGTTTAAAATTGGGGTTTGCGGGCTGAAAATTGTGGATTTTCAGTTGCAAAAATTGGGTTTTTTGGCTGAGAACTGGACTTTTTAGGCTGGAAATTGATTTTCAAGGGTTAAAAGTTGGGCTTTTGGGCTAACGATATGGGGGTTTTAGTCGGGGTTTGCTAAAATTTGAAGAGTTCTCAGGCCAGAAAAATGAGTTATTTTATTTAAAAATTACGTGTTTTAAGGCTGAAGAACTCTGGGTGTGGGAAATTATTGAGGCCTGAATTCAAGGTTTGTGTATCTGTTAGGATTTTGAATTACTCGAAGAAGATTCAATTTTTATTGGCAGCATGCCGTGGAAGGCCTCCTTGGCTGATATCTTCAAGCGGACCATGTATTTTGTAGTGTACGGCGGAGTAATTCAATAACGAGGTCTTTTGGGGTTTTATTGTCTTTAGGAGTTCCCTTTATGCGGGTTTTTTAATTTTATAGGGTGCTTGTAGGTTTTATTTCAGAAGCTATCAGTTTGGTATAAATGTCGTGGCGAACAGCATCGAACCTAAGGGAATTCCTTGCATTAAGACATCAAAGTGGTCGTAGAAAGAGTAATGGGATCATGATAGCCAGAATCATTGCCTGCTTCGAGATTTTGCAATATTGCCAGGATTATTATTTTCAGGCTATTACGTAGAACTCCATTTCACATCTAGAGTTTTCAGGTCTCCAAAAATTGTGTAGTCAAGGCCACGGCAATTGTGACAATACACAGATTAGATGGCTTGGACTGAGTGGTTTAGGTATAGCAGGTGGAAACTATGATATGTGTAACCTGACCGTGGTCAGACTACATAATTAGAAGTGATAACGTACTGTTGCAGGCTCGTGGATTTGAGTTTTCAAGACCTATACACAGTTTGCTAA_-_ATGGAGAACCAGAACATGACAGGACCATATTTGGACATAGTTAGTCAGGTACCAGGGCATGCATGCTCAGAGACTAAATTTCCATTGCTGGTATTAGACTCTGGTTACCCGAATTTTATGAATTTGAAGCCCTTGTGGCAGACAGCCCAATATGAAGGAACTTTGTTAAAACGTTCTCAGTATTATCAGCTTAGTTCTAATGGGAATATTCAAAAGGGTAGCCTTGATGCAGCACTGACTAGTGGGATGGAAGCAAGCTATAATTATATCCACATGGCTAACTTATCTGACCCTTATGCTGAATGTATAACTCCTGTCAAGGGAGATGTATCATCCATGCCACGCGGAAATTATGCTGATGTTTGGGGTGGCAATTGTGCTGATAAATTATCACAAATTAGATTTCTTGATACTTCCCAATTACAAGCACCTGATTATTACAAAAATATGTTCATGTGTGACTATAATATGAACAGATGTGGGTTTACTTTTCACCCTGCACTAGTACAGAGCTTTTCGGAGATGTTGCCCGGCAACGGCAAGGTAAATAAAGAGACTAATCCTGAAAACACGGCCATGGAGAAAAACGCAATTTCTGAAGTACTGGCCGCAGGAACATCAGGCCTCTGGGATGTTAATTTGCCATGGTACAGGGAAACTATTCCCTCATCTCTTACAACTATGCCAAATATGGGAATGAGTCAATTGTGCATGACAGCCCTGGACAGCTATGGGGGTGAGTTTATTGATTGTCCTGTCGTTGAAAATGAAGGTGCAATTCATGTGAGCTGTGATGTATTAAGCAAAGGGAACTCTGGAGTTTCTCAGACTCAGCTACATGAAAACACTGCAGATTTAGATGCTCTGTTGAGTTCTGATGAAGAGGAGAGTAGCAATGGTCAGGAGAGTAGCACTGGTCACTCACCAGGTGAATATAGTGGAAATAAAAAGGCATATACAAAAGTTAGGGATGATACTATTGCTGGGATATCAGCCAAGGAAACAGGTAGCAATCAACAGGAACATAAAGAAGAGGAAGCAGACTTTGGACCTGCTATTATTGAAGAATCAGTTGGCGAGTCTAGCATAAATGACAACTGTTTTTTGTTTGATGACTCTCTTCTGGTCACTCTGACCCAGGAAGTGGACATCCAAACCAAGAATTGCAAAAATGCCAAGGAGAATGAATGTAACAACAAGAATATCCGTGCATTGAGTGCTGTTAGCATGCTGACTGAGGGAAGTACAAAGAATAGTGCACTTAGATGCAGACAGTCACATAAATCTCTTTCAGGGAAATCTGCTTCTGCCAAGAAATCCAAAAAAGAGAGAATAAAAGGAATGGTCCAACTTCTGAGAAATATAATCTCTGGTGATGATTACATGGACACTGCTGTTGTCCTTAATAAGACTATTAGATATGTTAAATCTCTCCAGGTAAAAGTGAACAGATTGGAGGCTAATCAGCAGGAAAACGTGAAGGTTTGA___CCCCAGTGTGACAAGGTGTCTCTTGCAGAATTCCCAAGATAATGGTGAGAAAGTGGGTCCTAAAAGGCGCGAAGATGGCTTCGCCAGCTCAAAATAAAGATAGAAATTCTGGCATACTTGTCTACATTCCAATGATAGCTGTAGCCAGGATTTTGATCTGATCCTAGTTTTCTGGAGCTAAAATATTGGTGTGCTGTGCTTTGGTTTCGTATATATATTGAACTTACAAATTGTAGGGTTTTTAGTCATAGAATTCCTGCTTTTTTATGTATTTTGTACCCGTCCCTACTGAAGCTCTGGTGGTATTGTATTGAGTCTGTATGGAATATATGATATTTGTCGACGCATGTCTTATTTGGTCTTCTTTTCCGATGGATTTATCAAATTTTC

Fln Alignment:

Contig2029___MLTEGSTKNSALRCRQXXXXXXXXXXXXXXXXKERIKGMVQLLRNIISGDDYMDTAVVLNKTIRYVKSLQVKVNRLEANQQENV
A9NR87______________MLTEGSTKNSALRCRQSHKSLSGKSASAKKSKKERIKGMVQLLRNMISGEDYMDTAVVLNKTIRYVKSLQVKVNRLEANQQEKV

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
1911	83		16		0.994512
1913	83		16		0.994512
1916		85	14		0.993533
1924	14			85	0.993533
1925	28		71		1.0
1926		85	14		0.993533
1927	85		14		0.993533
1928	71			28	1.0
1929		85		14	0.993533
1931		16	83		0.994512
1932			16	83	0.994512
1973	11			88	0.923564
2117	90	10			0.90298
2119	90	10			0.90298
2122		90		10	0.90298
2125	90			10	0.90298
2126	90	10			0.90298
2150	90		10		0.90298
2290	85	14			0.993533
2293	83			16	0.994512
2307	20	80			0.995493
2476	11			88	0.923564
2514		11	88		0.923564
2515	88	11			0.923564
2624	75		25		0.996473
2708	25		75		0.996473
2879		20	80		0.995493
2880		20		80	0.995493
2884	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain