SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2027

Length: 1046 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2027

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WS03718.C21_A24 SS-B-N-22 Picea sitchensis cDNA clone WS03718_A24 3', mRNA sequence.	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	65%
Blast2go	uncharacterized protein	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	RNA-processing protein, HAT helix	IPR003107	-	-
Sma3	Acyl-CoA dehydrogenase, conserved site	IPR006089	-	-
Sma3	Vacuolar protein sorting-associated protein 62	IPR009291	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: D7U375

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 56 aas, putative chimeric sequence, your sequence is shorter than subject: 178 - 625

Fln protein: *LGALHSSAEQLYRELWRIYFSQHSGGEWVNASDLEFIMGNKAVIYSSKSGHANFPHAGDYLQGDSRLGVGIRNDAARSKFSLDTSKKYQIIAAEYLQMLSVNDIPLEPPWLQYTREWGPRVIYNTRAELDKMLRLLPPKMRYTIQNVFNKLPNELSGEEGPTGPKEKDYWEGDERG*

Protein Length: 179

Fln nts: TGTGATTGGGAGCACTTCACTCTTCGGCTGAGCAACTTTACAGGGAATTATGGAGAATATATTTCTCACAGCACAGTGGTGGTGAGTGGGTCAATGCCTCAGATTTGGAATTCATCATGGGTAATAAGGCCGTAATCTATTCTTCCAAAAGTGGACATGCAAATTTTCCCCATGCAGGGGACTATCTTCAAGGGGACAGCAGACTTGGAGTAGGAATAAGGAATGATGCAGCCAGAAGCAAATTTTCACTTGATACAAGTAAAAAATACCAAATTATTGCCGCTGAGTATTTGCAGATGCTCAGTGTTAATGACATTCCCTTGGAACCACCATGGTTGCAATACACGAGGGAATGGGGTCCTAGGGTCATCTACAATACACGAGCTGAGCTTGATAAGATGCTAAGATTGCTCCCTCCTAAAATGAGGTACACAATACAGAATGTTTTTAACAAACTACCAAACGAACTCTCAGGTGAGGAAGGACCAACTGGACCCAAAGAGAAAGACTATTGGGAAGGAGATGAAAGGGGTTGA___GTAGGATTTCTTAATTCCAAACAAGAATATTGCCATTTTTAAATGGGAACTCTCCGGCTAACAGTGCTGTATTGCTAGGGCTGGATTTGTTCTTTGGCATGCACTTTGTATCAGGAAAAAGTATATCACCTCTTTTGTATCACTATTCACAGCAATACGAGTGCTGCTTTGGAATGAGTACTCCCTTTATGTACAGCGTTGGAGTTGGCTCCACCTGTAGTGAGTCTTGGTGTCATTTTTTCTGGTTATTAATGGGCTGCTTGGTTTACCACACCTGTGCTTCAGAATTACATGAATTCATATCTGATCTCATAATGTTCTCAATATATAATTTTATTATAATGGCATTATACCATTCTTAAAGGAAAACTTTAATGTGTTTTTGTGTCCAGAGATCGATGTATTAGGTTGTTGAAGCAGATTTACATGATAACAAGTTTATATCTGTTGTGTCTGGCTATGTAAGAAGAAGCAAACAATGCAATGCGATTTTTCTCGATGCTCCACAGT

Fln Alignment:

Contig2027___ELWRIYFSQHSGGEWVNASDLEFIMGNKAVIYSSKSGHANFPHAGDYLQGDSRLGVGIRNDAARSKFSLDTSKKYQIIAAEYLQMLSVNDIPLEPPWLQYTREWGPRVIYNTRAELDKMLRLLPPKMRYTIQNVFNKLPNELSGEEGPTGPKEKDYWEGDER
D7U375______________ELWSIYFSQHSGGIWVNACDLEFIEGNKAIVYSSRSGHASFPHPGSYIQGSSKLGIGIRNDAARSNLYVDSSIEYEIIGAEYLG----DGVVTEPCWLQYMREWGPNIVYDSRSELDKMINFLPAMVRYSVENIFNKFPLELSGEEGPTGPKEKKNWAGDER

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
345	66			33	0.997452
346		66	33		0.997452
347	66		33		0.997452
350	66			33	0.997452
352			66	33	0.997452
353		33	66		0.997452
355	66	33			0.997452
357	33		66		0.997452
504	66		33		0.997452
689	76		15	7	0.999983

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain