SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2015

Length: 1407 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2015

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana] dbj\|BAF00809.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE36378.1\| Spc97 / Spc98 family of spindle pole body (SBP) component [Arabidopsis thaliana]	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	20%
Blast2go	spc97 spc98 family of spindle pole body component	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	79%
Blast2go	microtubule cytoskeleton organization	GO:0000226	Biological Process	79%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	79%
Blast2go	tubulin binding	GO:0015631	Molecular Function	79%
Blast2go	microtubule organizing center	GO:0005815	Cellular Component	79%
Blast2go	spindle pole	GO:0000922	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Spc97/Spc98	IPR007259	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW25

Fln msg: your sequence is shorter than subject: 382 - 754

Fln protein: YASTMVLVQECLITFIQQQVDHVGQQILSKLMDEWRLMDELAVLRAIYLFGSGDLLQQFCAVLFNKLDRGEPWDDYYELNTMLQESIRSSADGMLLPSLDSLVVTLSPKSNGAPEQGFGTIPLQLMGRGTGFGIDTLDSLWFAYKVAWPLELIADQVAIKKYNQVMAFLIKVKRAKFVLDKARRWMWKEGGSDVPNHKRHMLLQQKLMHFVNTFHQYVMDRVLYSAWIELCQGMASAGSLDEVIACHEAYLVSIQRQCFVAPDKLWALIASRVKTILGLALDFYSIQHTLCSGGAAPAIKARCQMEVDRVGHQFDECIVFLLRVLSFKLNVGHFPHLVDLVTRINYNYYYMSESGHLLTPLPETNYSKGSQPLRTNVYNKS*

Protein Length: 383

Fln nts: TACGCCTCTACCATGGTGCTAGTGCAGGAGTGCCTGATCaCTTTTATCCAACAGCAGGTAGATCATGTTGGTCAGCAGATATTGTCAAAGTTGATGGACGAGTGGAGACTGATGGATGAGCTTGCTGTTTTACGTGCTATTTACTTGTTTGGATCCGGTGACTTGCTGCAGCAGTTTTGTGCTGTGCTTTTTAACAAGCTAGACAGGGGAGAACCTTGGGATGACTACTATGAGCTAAATACTATGCTACAGGAGTCAATTCGAAGCTCTGCTGATGGTATGCTTCTTCCCTCTCTGGATTCTCTGGTAGTGACTCTCTCTCCGAAGTCAAATGGTGCACCAGAACAAGGGTTTGGCACTATTCCTCTCCAATTAATGGGACGTGGCACTGGGTTTGGCATTGATACTCTTGATTCTCTATGGTTTGCTTACAAGGTTGCATGGCCTCTTGAACTTATAGCTGATCAAGTTGCCATCAAGAAATACAACCAGGTGATGGCATTTCTTATTAAAGTGAAGCGTGCAAAATTTGTTCTTGATAAAGCTCGCAGGTGGATGTGGAAGGAAGGAGGTAGTGATGTGCCCAACCACAAGCGACATATGCTACTGCAGCAGAAACTTATGCATTTCGTCAATACATTTCATCAGTATGTCATGGATCGGGTCCTGTACAGTGCATGGATTGAACTTTGTCAAGGTATGGCCTCTGCTGGGTCTCTTGATGAAGTTATAGCGTGCCATGAAGCTTATTTGGTTTCCATCCAAAGGCAATGCTTTGTTGCTCCAGACAAACTGTGGGCTCTTATTGCAAGTCGTGTTAAAACTATTCTTGGATTGGCTTTGGACTTTTACTCGATACAACATACCTTGTGTAGTGGAGGTGCTGCTCCTGCTATAAAAGCAAGGTGTCAAATGGAGGTTGATCGTGTTGGTCACCAATTTGATGAGTGCATAGTCTTTCTCTTAAGGGTACTTTCATTTAAACTTAACGTTGGTCATTTTCCTCATTTGGTGGATTTGGTAACTCGAATCAATTACAATTACTATTACATGTCGGAGAGTGGTCATTTGCTAACCCCTCTACCTGAAACTAACTACAGCAAGGGTTCGCAACCATTGCGAACAAATGTCTACAACAAAAGCTAA___CTTATTTTATTTGTTCGCGACAATCGTAATATCATGCCTTGAAGTTTGGGTATGATGTTATGTAACATTTGTTTGTGTCATTATTGTTTTGTATTTTTCTACGGTATTAGTGTGCATATGGTTAGGGATCACATCCTTCTTGCTGCAGGTTCATATATCTGCATGTATCATTATTTTATTGAGTTAATTGTTGTCAACCTTAAGTGAGATGATTCTATAACTTTATAAGGCTTTTATTTTTGTACTTGCTTGAACTATTTG

Fln Alignment:

Contig2015___LMDELAVLRAIYLFGSGDLLQQFCAVLFNKLDRGEPWDDYYELNTML---QESIRSSAD--------GMLLPSLDSLVVTLS----PKSNGAPEQGFGTIPLQLMGRGTGFGIDTLDSLWFAYKVAWPLELIADQVAIKKYNQVMAFLIKVKRAKFVLDKARRWMWKEGGSDVPNHKRHML-----------------LQQKLMHFVNTFHQYVMDRVLYSAWIELCQGMASAGSLDEVIACHEAYLVSIQRQCFVAPDKLWALIASRVKTILGLALDFYSIQHTLCSGGAAPAIKARCQMEVDRVGHQFDECIVFLLRVLSFKLNVG--HFPHLVDLVTRINYNYYY
A9NW25______________LNGHLKALKDYFLLAKGDFFQCFLEES-RSLMRLPPRPSTAEADLKVPFQQAAIKTIGDDDKYFTRVSLRMPSLGSTSTTHGDISRPKSTR--DGSLGSLSNMYGNSSAGPSLDGWDGIALEYSVDWPLQLLFTREVLAKYCKVFQYLLRLKRIQLELEKSWAEAMQQDHADSARERKDRTNSLISQQRRQQRMPMWRVRQHMTYLITNLQFYIQVDVIESQWNLLQERVEASEDFTELVRFHQEYLSALISQSFLDIGSVSRILDSIIKLCLQLCRIIEQYEGTPIT------------TELEQITEEFNKKSNSLYTILRSSKLAGSQRAPFLRQFLLRLNYNSFF

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
858		33	66		1.0
936		42		57	1.0
954		57		42	1.0
981	87		12		0.992554
983			12	87	0.992554
985	87		12		0.992554
987	87	12			0.992554
991	87		12		0.992554
992	87		12		0.992554
996		12		87	0.992554
997	12		87		0.992554
998		12	87		0.992554
1050		37		62	1.0
1107	25		75		1.0
1113			75	25	1.0
1123		87	12		0.992554
1209	90		10		0.90298
1221			12	87	0.992554
1223		50		50	1.0
1251		80		20	0.995493
1301	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain