SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2010

Length: 1738 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2010

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG2319 FOG: WD40 repeat	-	-	2.0e-10	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	protein	-	-	0.0	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	89%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	KDPG/KHG aldolase	IPR000887	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3		IPR015706	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADQ7

Fln msg: your sequence is shorter than subject: 195 - 347

Fln protein: CGSDDGKVKVWCTRQETSVLNIDMKANICCVKYNPGSSYYVAVGSADHHIHYYDLRNPSVPLYEFNGHRKTVSYVKFISTNELASASTDSTLRLWDVRDNCLVRTFKGHTNEKNFVGLTVNSEYIACGSETNGVFVYHKAISKPAAWHQFGSPDVDDSDDDTSHFISAVCWKSESPTMLAANSQGTIKVLVLAP*

Protein Length: 196

Fln nts: AATGTGGGAGTGATGATGGAAAGGTCAAGGTGTGGTGTACAAGGCAAGAAACAAGTGTTCTCAATATTGACATGAAAGCAAATATTTGTTGTGTCAAGTACAATCCTGGATCAAGCTATTATGTTGCGGTTGGTTCAGCAGATCATCACATTCATTATTATGACTTGAGGAACCCTAGTGTTCCATTATACGAATTTAATGGTCATAGAAAAACAGTTTCCTATGTTAAATTCATTTCAACAAATGAACTAGCTTCTGCATCTACAGACAGTACACTGCGCTTGTGGGATGTGAGGGATAATTGCCTTGTACGGACATTTAAGGGGCACACTAATGAGAAGAACTTTGTGGGGCTTACAGTCAACTCTGAATACATAGCTTGTGGCAGTGAAACAAATGGGGTGTTTGTGTATCACAAGGCTATTTCAAAGCCTGCTGCTTGGCATCAATTTGGAAGTCCAGATGTGGACGACAGTGACGATGATACATCACATTTCATAAGTGCTGTTTGTTGGAAAAGTGAGAGCCCTACAATGTTAGCTGCTAATAGCCAAGGAACAATTAAAGTTCTTGTACTTGCACCGTGA___ATTTCAAGTTTCTCATATAATTCTTCAAGGCCCTTCCTAGATATCAGAGTTGGAGAGAATTTTGAAATTTGTTAAATTAAGATTCTTTCTGGAAATTAGCTCTCTGGATTTCTTGCTGCCTGAGAATGTTGAGAAATGAGGTTGATGTGGATTATATGCGCAATTTTCAATCTACTCATATTTCTATAGTGCATATGCTTGTTGGTTGTCATTGACCTCTAATAGAATAGCCAGAGTATCTTCCAGTAATGCGGCATGTTATTGCATGTGCTATATGCCCCTCTTAACACTAATCTGAAGGAATATCGGCCTCAATTTGGCAAGTTCTTTGGTCTGGGGCGAGCCTACTGGTGAAGTTTAAGACTATGAAGGCTAAATTTTTCAAGGGTGTCAGAACTCGAGGAAAGATTCAGGAGATGGAGAATGCCCAGGAGTAACATTTTGTACTGATGCTAAATGTATTATATCTTGGTCTTTTATCGTTCTTGGAATACTTGCCAGCTGTCATCACACATTTTTATGCTTGAACTACGAGGAATAGTGAAGCGTTGCCCCAACTTATGGGCTTCCCTCTTCAACTATTATTTTGTACTGATGCTAAATGTATTATATCTTAGTCTTTTATCGTTCTTCGAATACTCGCCTGTTGTCATCATACTTTTTTAGGCTTGAACTACGAGGAATAGTGAAGTGTTGCTCTAACTTGTGGGCTTCCCTCTTCAACTATTATTGGGATTTGCTTCTAGAGCCAAATAGTTGGACACTATCAGAGCTTAGAGAATTGTTTATATCGGTTCCCTGTAAAAGGTTGTATTTGAGGGCAGTCCGTGTCCCTTGTCAATACTTATGAGTTGCAGCTCATAGATTTTTTCAAGTCCCAAGACCAGCAACACGTAAATGAACATGAAATAAATATTGTAAAATTGTGTATTGGTAAATTTGTTGAAGAAATAACAAGTTCTTGGCATTTGTTATCACGATAGTATTAAATTCCATTGGATAGTGTTGCACTCGCATCAGCTAATCGATCAAATGGAATCCAGTGAAGGTTTGGAGGTATGAATTTATTGGAGGGCCTGAACGAGGTACGGATTTGATTTATATGAAGAAGTGTATGCGAGATAAGTAATCAAGTTTCAAACTTTAATATG

Fln Alignment:

Contig2010___GSDDGKVKVWCTRQETSVLNIDMKANICCVKYNPGSSYYVAVGSADHHIHYYDLRNPSVPLYEFNGHRKTVSYVKFISTNELASASTDSTLRLWDVRDN------CLVRTFKGHTNEKNFVGLTVNSEYIACGSETNGVFVYHKAISKPAAWHQFGSP---XXXXXXXXTSHFISAVCWKSESPTMLAANSQGTIKVL
D5ADQ7______________GSDDCTVKLWSINQGGSVSTIRTKANVCCVQFQPDSGHLIALGSADYKIYCYDLRNIKTPWYILASHSKTVSYVKFLDSASLVSASTDNTLKLWDLATNKGRILKNPVRTFTGHTNVKNFVGLSVADGYIATGSETNEVFVYHKSLPMPVASYKFNCEDPMTGLEMEDDSAQFVSCVCWRGQTQTLVATNSTGNIKIL

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
452			25	75	0.996473
453			25	75	0.996473
480		75		25	0.996473
639		33		66	1.0
743		27		72	1.0
744	63	27			1.0
746			72	27	1.0
747		72	27		1.0
750	72			27	1.0
751	72		27		1.0
753	27			72	1.0
754		27		72	1.0
1005	33		66		0.997452
1053	80	20			0.995493
1056	80		20		0.995493
1057			20	80	0.995493
1058	80	20			0.995493
1060		80	20		0.995493
1062		20		80	0.995493
1063	20		80		0.995493
1064		20	80		0.995493
1206	20			80	0.995493
1207		20		80	0.995493
1209			80	20	0.995493
1437		16		83	0.994512
1444		16		83	0.994512
1449	16		83		0.994512
1456	16		83		0.994512
1457	83		16		0.994512
1459	16			83	0.994512
1462			16	83	0.994512
1463	16			83	0.994512
1468			16	83	0.994512
1469		83	16		0.994512
1470	16	83			0.994512
1473	85		14		0.993533
1498			83	16	0.994512
1565		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain