SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2007

Length: 2320 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene2007
CGTCGTGACCTTGGCTGTCACTCAAAGGGCCTCTATGGGAAGAAATTTCACGGAAGCTCGCAGACCTAGGTTATCAGAGGAGTGCCAAGAAATGCAAAGAAAAGTTCGAAAACGTTCAGAAGTATTATAAACGAACTAAAGACGGAAGAGCTGGCCGGCAGGATGGTAAAAGCTATAGATTCTTCAGCCAGCTGGAAGCTCTCCATAATCATAACAACAACAGCAATAATAATCTTCACAACAGCAGCAGCATTGGCAATAACACTAATAATGCAAGAAACAATCATAGCCATGCACTGAGCAGCGGGGCCGGAGCACCAGTCAGGCCACAGCCTACCGCTCCTACTGTGCTCACCAACAATGATATTGCCGGTGCCGGTGCCAGTGCCAGTGCCGGGGAATTGAACAGAAATAGCGGCGCCGCTACTAATGCCATCGTATTGAAGCAAAGCGCAGATTATACTGCCGGTAATTTAAGTTTCTCGTCCGAATCGTCCGAGGACGAAGAATTTGATGAACAGACGGACAGTCGGAAAAGAAAGCGGGGCTCCAGCACCACAGAGAAAATGATGCTGTTTTTCGAGCAATTGATAAAGCAAGTAATGGAGAGGCAGGAGAGCATGCAGCAGAAGTTTCTGGAAACTATAGAGAAGCGCGAGCAAGACAGAATGATCCGCGAGGAGGCTTGGAAAAGGCAAGAAATGGCGCGATTGAACAGAGAACATGAGATTATGGCCCAGGAACGAGCCCTTGCGGCTTCCAGAGATACTGCATTCATTGCATTGTTTCAGAAAATTACAGGCCAGAATTTCCAGGCTCCTGTTATGGCTCCTGTGGCACAGTCGACAACGACTATCAATAATACTGTGCCATTGCCGACTTACGAAACGCATCCAGCCCGGGATGTTGTTACTCCTCATCATCAGCGGGATACTACTCAAGATGTCAATGTAGACCAAACGGAATTGACCTTTGATCCCAACAGCAGCAGGTGGCCCAAGCCTGAAGTTCATGCACTGATAAAGCTGAGAACCGGACTGGAGCCCAGATACCAAGATGCCGGGCCCAAAGGCCCGCTGTGGGAAGAAATCTCTGCTGGAATGGCCCGCCTCGGCTACAGCCGCAGCTCCAAGAGGTGCAAGGAGAAATGGGAAAATATCAACAAATACTACAAGAAAGTTAAAGAAAGCAACAAGAAACGGCCGGAAGATGCAAAGACGTGTCCTTATTTTCACCAGCTGGAACAATTATACAAGAAAAAGATCTTCGGCAATGCAGCCAAGCAAGAACACCCGAACCAGGAGGACGCCCGCATCGAGCAATTACCCGGCGGAAACAACAACAATAGCGACAGAAACGAGCGCCAAAGCACAGACGGCATCCTGGTCATTGTGCCGCCTCCAGGATCGTCATCGGACGTCAAGAACAGCAATTCAAACCCTGACAATAACGGTCCACCGATTCCTTCGAGCAGCGGAGCAGTGCAGACAACGTTCTTTACAAGCCCGGAGAATGGAACCGGCGCCGATCAGCGAGCTCTGAAGAAGCCAGAAGGCCTTGTGATGGACGTGATGGACATGGACGACATGCGGTCCGCGCCGCAGCACCAACAGCAATCCGTTGTAGACGATTACGATGATGATAAAATGGACACAGAAGAAGAAGAAGAAGACAGCGACAATAACAGCGAGCAAGAACATCATAATATTATTCCTATTCCTACTATATCCACTACTCACGACAGGCAGCCGACGACGGTGGTCGATCATCTACCGTTTGCCGAGTTTGTTCACGAGAGCCGAACGAGCACTACAGCCGCCGCCACAGCTGCCAGTTCCTTCATGGCCATGGTCCACCGCTTCGCTACAGCCGAAGCTCCCGAGTTTAAAACCTCTAAAGCATAAACCGCCGCCTAAGATTATAAATTATCATCACTAGCGGCAGCAGACTGAGCTTGTGTACCATATGTACCATTAGCAGAGGTTTAGGTTTAAGGTTGGGTTGGGATATTGGCCATGAAGGCATTTCATCTTTATTGTCATCAAGCAAATAACCCTAATAAATTTGCGCTGCCATTGTTGCAGGGACTGTTACAGGGAAGTAGTTTTTTTGGTTAGCATATTTATTTATTTATTTATTTGTGGAATAAAATCTGATGTGTGAAAGGTCGTTTCGGCTGCTGCAATCGACAAAATCGAGTTATAAATGATGCAGTGGGCATATGGCCCTCTGACTTCACCTCTCTGTGGACTGTACAGACAGAGAGCTGGTAGGCCTCTCATATTTTCCTTCTGTAATCTTATTGACTTCATTATGAACC

Ace file of the UniGene sp_v2.0_unigene2007

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein GT-2-like 1 [Arabidopsis thaliana] gb\|AEE31573.1\| protein GT-2-like 1 [Arabidopsis thaliana]	-	-	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	24%
Blast2go	protein	-	-	59%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of cell growth	GO:0030308	Biological Process	59%
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	59%
Blast2go	negative regulation of DNA endoreduplication	GO:0032876	Biological Process	59%
Blast2go	cellular response to water deprivation	GO:0042631	Biological Process	59%
Blast2go	negative regulation of transcription, DNA-dependent	GO:0045892	Biological Process	59%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	59%
Blast2go	nucleus	GO:0005634	Cellular Component	59%
Blast2go	regulation of stomatal complex patterning	GO:2000037	Biological Process	59%
Blast2go	regulation of stomatal complex development	GO:2000038	Biological Process	59%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	MADF domain	IPR006578	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Myb-like domain	IPR017877	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRE1

Fln msg: your sequence is longer than subject: 446 - 378

Fln protein: MMLFFEQLIKQVMERQESMQQKFLETIEKREQDRMIREEAWKRQEMARLNREHEIMAQERALAASRDTAFIALFQKITGQNFQAPVMAPVAQSTTTINNTVPLPTYETHPARDVVTPHHQRDTTQDVNVDQTELTFDPNSSRWPKPEVHALIKLRTGLEPRYQDAGPKGPLWEEISAGMARLGYSRSSKRCKEKWENINKYYKKVKESNKKRPEDAKTCPYFHQLEQLYKKKIFGNAAKQEHPNQEDARIEQLPGGNNNNSDRNERQSTDGILVIVPPPGSSSDVKNSNSNPDNNGPPIPSSSGAVQTTFFTSPENGTGADQRALKKPEGLVMDVMDMDDMRSAPQHQQQSVVDDYDDDKMDTEEEEEDSDNNSEQEHHNIIPIPTISTTHDRQPTTVVDHLPFAEFVHESRTSTTAAATAASSFMAMVHRFATAEAPEFKTSKA*

Protein Length: 447

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGGGCCTCTATGGGAAGAAATTTCACGGAAGCTCGCAGACCTAGGTTATCAGAGGAGTGCCAAGAAATGCAAAGAAAAGTTCGAAAACGTTCAGAAGTATTATAAACGAACTAAAGACGGAAGAGCTGGCCGGCAGGATGGTAAAAGCTATAGATTCTTCAGCCAGCTGGAAGCTCTCCATAATCATAACAACAACAGCAATAATAATCTTCACAACAGCAGCAGCATTGGCAATAACACTAATAATGCAAGAAACAATCATAGCCATGCACTGAGCAGCGGGGCCGGAGCACCAGTCAGGCCACAGCCTACCGCTCCTACTGTGCTCACCAACAATGATATTGCCGGTGCCGGTGCCAGTGCCAGTGCCGGGGAATTGAACAGAAATAGCGGCGCCGCTACTAATGCCATCGTATTGAAGCAAAGCGCAGATTATACTGCCGGTAATTTAAGTTTCTCGTCCGAATCGTCCGAGGACGAAGAATTTGATGAACAGACGGACAGTCGGAAAAGAAAGCGGGGCTCCAGCACCACAGAGAAA_-_ATGATGCTGTTTTTCGAGCAATTGATAAAGCAAGTAATGGAGAGGCAGGAGAGCATGCAGCAGAAGTTTCTGGAAACTATAGAGAAGCGCGAGCAAGACAGAATGATCCGCGAGGAGGCTTGGAAAAGGCAAGAAATGGCGCGATTGAACAGAGAACATGAGATTATGGCCCAGGAACGAGCCCTTGCGGCTTCCAGAGATACTGCATTCATTGCATTGTTTCAGAAAATTACAGGCCAGAATTTCCAGGCTCCTGTTATGGCTCCTGTGGCACAGTCGACAACGACTATCAATAATACTGTGCCATTGCCGACTTACGAAACGCATCCAGCCCGGGATGTTGTTACTCCTCATCATCAGCGGGATACTACTCAAGATGTCAATGTAGACCAAACGGAATTGACCTTTGATCCCAACAGCAGCAGGTGGCCCAAGCCTGAAGTTCATGCACTGATAAAGCTGAGAACCGGACTGGAGCCCAGATACCAAGATGCCGGGCCCAAAGGCCCGCTGTGGGAAGAAATCTCTGCTGGAATGGCCCGCCTCGGCTACAGCCGCAGCTCCAAGAGGTGCAAGGAGAAATGGGAAAATATCAACAAATACTACAAGAAAGTTAAAGAAAGCAACAAGAAACGGCCGGAAGATGCAAAGACGTGTCCTTATTTTCACCAGCTGGAACAATTATACAAGAAAAAGATCTTCGGCAATGCAGCCAAGCAAGAACACCCGAACCAGGAGGACGCCCGCATCGAGCAATTACCCGGCGGAAACAACAACAATAGCGACAGAAACGAGCGCCAAAGCACAGACGGCATCCTGGTCATTGTGCCGCCTCCAGGATCGTCATCGGACGTCAAGAACAGCAATTCAAACCCTGACAATAACGGTCCACCGATTCCTTCGAGCAGCGGAGCAGTGCAGACAACGTTCTTTACAAGCCCGGAGAATGGAACCGGCGCCGATCAGCGAGCTCTGAAGAAGCCAGAAGGCCTTGTGATGGACGTGATGGACATGGACGACATGCGGTCCGCGCCGCAGCACCAACAGCAATCCGTTGTAGACGATTACGATGATGATAAAATGGACACAGAAGAAGAAGAAGAAGACAGCGACAATAACAGCGAGCAAGAACATCATAATATTATTCCTATTCCTACTATATCCACTACTCACGACAGGCAGCCGACGACGGTGGTCGATCATCTACCGTTTGCCGAGTTTGTTCACGAGAGCCGAACGAGCACTACAGCCGCCGCCACAGCTGCCAGTTCCTTCATGGCCATGGTCCACCGCTTCGCTACAGCCGAAGCTCCCGAGTTTAAAACCTCTAAAGCATAA___ACCGCCGCCTAAGATTATAAATTATCATCACTAGCGGCAGCAGACTGAGCTTGTGTACCATATGTACCATTAGCAGAGGTTTAGGTTTAAGGTTGGGTTGGGATATTGGCCATGAAGGCATTTCATCTTTATTGTCATCAAGCAAATAACCCTAATAAATTTGCGCTGCCATTGTTGCAGGGACTGTTACAGGGAAGTAGTTTTTTTGGTTAGCATATTTATTTATTTATTTATTTGTGGAATAAAATCTGATGTGTGAAAGGTCGTTTCGGCTGCTGCAATCGACAAAATCGAGTTATAAATGATGCAGTGGGCATATGGCCCTCTGACTTCACCTCTCTGTGGACTGTACAGACAGAGAGCTGGTAGGCCTCTCATATTTTCCTTCTGTAATCTTATTGACTTCATTATGAACC

Fln Alignment:

Contig2007___QLIKQVMERQESMQQKFLETIEKREQDRMIREEAWKRQEMARLNREHEIMAQERALAASRDTAFIALFQKITGQNFQAPVMAPVAQSTTTINNTVPLPTYETHPARDVVTPHHQRDTTQDVNVDQTELTFDPNSSRWPKPEVHALIKLRTGLEPRYQDAGPKGPLWEEISAGMARLGYSRSSKRCKEKWENIXXXXXXXXXXXXXRPEDAKTCPYFHQL
A9NRE1______________ELLESLVNRQQRFFVDLLESIERKEEIR----------ERIRQEKEEKWRAEERAQRCLFNNAMIVLAKKLVDGD----------PGFCGFEEFKPKPTTGGSEQTD-----HDAGAAA-ITVVGGGGGPKKRSKNWKRAEVLRLIKFRAEMESRFAKSARRAALWEELAELLGAEGIKRDGKQCREKWDKLMAEFKDVSDGKRDRSES----PYYAEL

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
909	25		75		0.996473
1157	90	10			0.90298
1159	90			10	0.90298
1208		14	85		0.993533
1210	85			14	0.993533
1211	85	14			0.993533
1217	85	14			0.993533
1218	85			14	0.993533
1219	85			14	0.993533
1221	85		14		0.993533
1298		33	66		0.997452
1299	66			33	0.997452
1300	66			33	0.997452
1619	85			14	0.993533
1620	85			14	0.993533
1703	83		16		0.994512
1706	83		16		0.994512
1708	83		16		0.994512
1710		14		85	0.993533
1711	85	14			0.993533
1714	85	14			0.993533
1785		87		12	0.992554
1890		50		50	1.0
1896		87	12		0.992554
1899			12	87	0.992554
1900	87			12	0.992554
1901	87		12		0.992554
1905	87	12			0.992554
1907	87			12	0.992554
1908	87		12		0.992554
1909	87		12		0.992554
1911		87		12	0.992554
1913		87		12	0.992554
1915	12		87		0.992554
1918	12			87	0.992554
2010		12	87		0.992554
2011	87		12		0.992554
2013	87	12			0.992554
2014			12	87	0.992554
2017	12		87		0.992554
2020	85			14	0.993533
2023	85	14			0.993533
2024	85			14	0.993533
2026			85	14	0.993533
2029		14		85	0.993533
2031		14		85	0.993533
2032	14	85			0.993533
2111		33		33	0.997753
2219			14	85	0.993533

SSRs (tot: 2)

Start position	End position	Sequence	Length
1655	1672	AGA AGA AGA AGA AGA AGA	18
2120	2140	TATT TATT TATT TATT TATT T	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain