SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene2005

Length: 1200 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene2005

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Low-phosphate root 1 n=6 Tax=Arabidopsis RepID=A5X8Y8_ARATH	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	cupredoxin-like protein	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Oxidoreductases, Acting on diphenols and related substances as donors, With oxygen as acceptor.	EC:1.10.3.-	-	0.0	74%

Source	KEGGs	Term	Identity
Blast2go	Betalain biosynthesis	00965	74%
Blast2go	Metabolic pathways	01100	74%
Blast2go	Biosynthesis of secondary metabolites	01110	74%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	74%
Blast2go	root development	GO:0048364	Biological Process	74%
Blast2go	auxin polar transport	GO:0009926	Biological Process	74%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	74%
Blast2go	meristem maintenance	GO:0010073	Biological Process	74%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	74%
Blast2go	indeterminate inflorescence morphogenesis	GO:0048283	Biological Process	74%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	74%
Blast2go	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	GO:0016682	Molecular Function	74%
Blast2go	copper ion binding	GO:0005507	Molecular Function	74%
Blast2go	cell wall	GO:0005618	Cellular Component	74%
Blast2go	membrane	GO:0016020	Cellular Component	74%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	74%
Blast2go	response to karrikin	GO:0080167	Biological Process	74%

Source	InterPros	Term	Type	Identity
Sma3	Multicopper oxidase, type 1	IPR001117	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	Uncharacterised domain XH	IPR005379	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Multicopper oxidase, type 3	IPR011707	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRY9

Fln msg: Distance to subject end: 163 aas, your sequence is shorter than subject: 400 - 583

Fln protein: RRRGRISRFDSMINMKDGASSLEMFVDELPDIPKLRGYISKDGVLKPGRLRIGMFETKWKFHRDLPASTVFAYGRSRETATVPGPTIEAIQGADTYVTWENHLPSRHILPWDPSLSVAKPKYGGIPTVVHLHGGIVEPASDGNSMAWFTAGFNETGPTWKTAKYHYVNVQHPGNLWYHDHALGLTRVNILAGLMGAYIIFNPTVEEPLNLPSGAEYDRSLLIFDKSFTKNGSIYMNSTGDDPMMHPQWQPEYFGDVIIVNGKAWPYLKVKRKKYRFRIVNASNSRFYRLALSNGMSMTQIGSDSAYLHRPVSVKDILLGCSEIADIIIDFSNVSADGDGIILTNSAPSVYPDGKPVNNLTSKVMKFVIEKTEVSDSTEIPHKLLPYPRAKIKDSVLTRYI

Protein Length: 401

Fln nts: CGGCGAAGGGGTCGCATATCAAGATTTGATAGCATGATTAACATGAAGGATGGAGCTTCATCTCTTGAGATGTTCGTGGACGAGCTCCCAGACATACCCAAACTCAGGGGATATATCTCGAAAGATGGAGTATTGAAGCCCGGGAGGCTTCGAATTGGGATGTTTGAGACAAAATGGAAATTTCACAGAGATCTCCCTGCGAGTACTGTGTTTGCTTATGGAAGGTCAAGGGAGACCGCGACTGTACCAGGACCTACGATCGAAGCCATCCAAGGCGCAGATACGTACGTGACCTGGGAAAACCATCTGCCTTCTCGACACATTCTTCCGTGGGATCCCAGCCTTAGTGTTGCCAAACCCAAATACGGCGGAATACCCACGGTCGTTCACTTGCACGGCGGAATTGTCGAACCCGCGAGCGATGGGAACTCAATGGCGTGGTTTACAGCGGGATTCAACGAAACTGGACCGACCTGGAAGACAGCTAAGTATCACTACGTCAATGTCCAGCATCCGGGCAATCTTTGGTACCATGACCATGCCCTTGGCCTCACCAGAGTAAATATCTTGGCCGGCCTCATGGGCGCCTATATAATTTTCAATCCCACAGTCGAGGAACCTCTCAACCTACCATCTGGTGCAGAATATGACCGTAGTCTTCTCATCTTTGATAAAAGTTTTACCAAGAACGGATCAATTTACATGAATTCCACCGGTGACGATCCAATGATGCATCCCCAATGGCAGCCAGAGTATTTCGGCGATGTGATAATAGTGAATGGCAAGGCGTGGCCTTACTTGAAGGTGAAGAGAAAGAAATATCGCTTCAGAATTGTGAATGCCAGCAACTCCAGGTTCTACAGACTGGCTTTAAGTAATGGGATGTCCATGACCCAGATAGGCTCAGATTCTGCATATCTACACAGACCGGTGAGCGTCAAGGATATACTGCTCGGCTGCTCTGAGATTGCAGACATCATAATAGACTTCAGCAATGTGAGCGCCGATGGGGACGGGATTATATTGACAAACAGCGCTCCATCTGTATACCCCGATGGCAAACCAGTGAATAATCTGACCAGTAAAGTGATGAAATTTGTGATTGAAAAGACAGAGGTCTCTGATTCAACTGAAATTCCCCACAAACTACTGCCATACCCTCGAGCAAAGATCAAAGACTCGGTGCTTACACGATACATT

Fln Alignment:

Contig2005___ASSLEMFVDELPDIPKLRGYISKDGVLKPGRLRIGMFETKWKFHRDLPASTVFAYGRSRETATVPGPTIEAIQGADTYVTWENHLPSRHILPWDPSLSVAKPKYGGIPTVVHLHGGIVEPASDGNSMAWFTAGFNETGPTWKTAKYHYVNVQHPGNLWYHDHALGLTRVNILAGLMGAYIIFNPTVEEPLNLPSGAEYDRSLLIFDKSFTKNGSIYMNSTGDDPMMHPQWQPEYFGDVIIVNGKAWPYLKVKRKKYRFRIVNASNSRFYRLALSNGMSMTQIGSDSAYLHRPVSVKDILLGCSEIADIIIDFSNVSADGDGIILTNSAPSVYPDGKPVNNLTSKVMKFVIEKTEVS----DSTEIPHKLLPYPRAKIKDSVLTRYI
B8LRY9______________ASSLEMFVEELPDMPRLEGYVLEHGKLKPTELRIGMFETKWKFHSALPPTTVFAYGASKETATVPGPTIEAIQGTSTFVRWENHLPSRHFLPWDPTLKTARAKHGGVPTVVHLHGGIHEPESDGNSQAWFTAGFNETGPAWKKPLYHYNNIQHPGNLWYHDHALGFTRANLLAGLIGAYVIRSPAVEKPLGLPSGPEYDRNLLIFDRSFATDGSIYMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWPYLKVKRRKYRFRILNASNARFYRFALSNGLNMTHIGSDSTYIPMPVTAKQFLLGPSELADIVIDFTD-SPTGEA-ILTNDAVYPYPSGDPVDHLNSKVMKFVIESKRGALSSHDESRIPEKLIEYRRPLKESAAHTRYI

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
273		66	33		0.997452
277		66	33		0.997452
278	66			33	0.997452
282		66		33	0.997452
287	33		66		0.997452
381	33			66	1.0
438	50		50		1.0
615	25		75		0.996473
624	75	25			0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain